rna3569, rna3569 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3569
Unique Name	rna3569
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2182
Alignment location	CM002461.1:723288..725402 +

Link to JBrowse

Properties


Property Name	Value
Product	alkylated dna repair protein
Orig transcript id	gnl\|cribi\|Naga_100046g15.5126.mrna
Orig protein id	gnl\|cribi\|Naga_100046g15.5126
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:723288..725402 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100046g15	gene3438	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3569	rna3569-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27087.1	cds3560	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:723288..725402+
coding sequence from alignment at CM002461.1:723288..725402+

mRNA sequence

>rna3569 ID=rna3569|Name=rna3569|organism=Nannochloropsis gaditana|type=mRNA|length=2182bp
GAGTATTTAAATGCTCTTCTCTCATCCAACAGATTCGTCTGACGTATGTA
CTCACTTCCCCTCGGCGTTCCGTTCCTGTGTCCTGCAGACATCGTCTCAA
CTCGGCGGGTCAGCTCTCTGTCTTCGCCGACAGCCGCAGACGAGCCTGTC
TATACCGAGGATGCTGCTGAGCACTCCCAACACGGCCCCTGCACCATCTG
CAGCTTTCCTCCAGACGCTTCAATTTAGCCCACAAAGAAATACTCACGCT
AGCCATGTACCTACTAGCCCCACCGTTCACCCTCTGGCAGCGCCCTTATC
ACCTGCGGCCTTCCACCTCCCCTCCCTGAACGCAGTTCGACAGTCACCAG
AGCATGACTCAAATGCTAGTCCATTTCCGATACCACGAAGCTCCAAAAGA
AGAAAAGGGCCTATTCGATGGCAACCGCTCTTAACATGGCTGCTGTTGGT
CATTCCGGCGCTATGGAGCCCACCAACCCCTGAACAACTTGCCCCTCTAG
GCCTGAATTCTCTCGGTAGCACCGCTACAGTCAGCCAAGCCGCGGCGGGG
TTGACGGACGAACAGCAACTAGTGGCTGACGTCTGGAAGCGCGTGGACAA
ACTTTTCCTGGATCGTACGTTCAACGGCCAAGACTGGTTCGCATTGCGAC
AAGCCGCTCTGAAGAAGCCCTACAAGACCACAGCCCAGGTTTACGAGGGC
ATTAAGGCCATGCTGGAGCCGCTGGGGGATCCTTACACTCGTTTCCTCCC
TCCCTCACAGTACGACTCCCTTTTTGGTCTTGCCACGGGCAGTGTGGCAG
GTGTGGGAGTAAGCTTGCAGATCGACCCAGCGACCCAGGAGCTGACGGCA
GCCGAGGTGGAGAAAGGCTCCCCGGCGGAGGCCGCGGGGCTGAGAGCAGG
CGACAAGCTGCTGTATGTGGACGGACAGGCCACTACTGGATTACTGGTGG
ACGACTGTGCGAACCTGTTGCGGGGCCCGGCGGGCACGAAGGTGGGAGTG
GTCGCAAGGGGCAAGGGCGGGGAGTCCAAGGACGTCATCATTACCCGTCA
ATTGATCAAAATCCAGAGCGTGGAGGCATTGACGGCTAACAAGGGGGGCA
AAAAGGTCGGTGTTATTCGAATCCGATCCTTTTCGCAAACGACGGCCGAC
ACGGTGGCCGCGGAGCTGGAAAAGCTGGAGAAGGAAGGGATCAGTGCAGT
AGTAATCGACCTGAGGGGGAATCCCGGTGGATTTCTGGGCGGAGGCATCG
ACACCGCCCGGCTTTTCCTGCCTGCCTACGAGAAAATTGTGTCGGTGGTG
GGGAAGACCGGCATTGTGGAGGAGTACCAGACCACGGATGAAGGACGCGA
GACGACCAAGCCTTTGTTCGTCGTGGTGGACAAGCGGACGGCCAGCGCCT
CGGAAGTGCTCTCGGCCGCCTTGAAAGAGAACAATCGAGCCAAACTGGTG
GGCGAAAAGACGTTCGGAAAGGGTGTGGTGCAGACGATCGAGCAAGTGGG
ACAGAACGCGGGGGTATCGGTGACCATCGCAGCCTACTCCACTCCCCTTG
GGAACAACATCAACAAGAAGGGCATCGACGTGGACATCCCCTCCACCTGC
GAGGCCACGGACAAGGCCGTCCAGTGTCTACCCGAAGGAGTTTTATAGTG
GCTTGATACCGATGCAACCTTAAAGTCAGAAACAATCTCTAGGTTTCACG
CGATTTCAACAAAGTAAGGAATGTCAGTTTACTGTCTACATATTGTTGTA
CGGGAAAGGGTGTCAGGATTTCAAGACTGACAGGCACAATGACTTGCATT
ATTATTGATAAATTAGTATGGATAGTATGCGCCTAAAGCTTGACCATCAT
CTATGTTTTTTTTCGCCGTGCGTGACGCTACACAAGTGTTACCTGCTGCA
CGTGACGATGACGCATTTGAGTCACGCTCATATCGTGCCACGAGGCTTTT
CAAAATGAAAAAGGCGATTTTGTGAAGCGCTTGTGTGTAGATACGAACGA
TAATTGCTGGAGAAAGAGCCAATTGAAGTACCCGTAAAGCATGCTCGTCT
CCAAAGCGCAGATGGCGTCGAAAATAGGTGCAGGGTCCCCAAGGTTCACA
ATCCTATGTTGTAGAGTACCTTCAGCTGTCCGTAAAACGCTTCAGGTATG
CCTATCAACCAATATCAGAAAGTGTCCGATTT

protein sequence of rna3569

>rna3569-protein ID=rna3569-protein|Name=rna3569|organism=Nannochloropsis gaditana|type=polypeptide|length=479bp
MARQSRIRSPNHTISALALRHVAVLLFLLSRQINAFLPGHVLFRPPSSFH
IPVVSSRPSTPVETPAQRVQHALAPEDILSNAVMNMKYLKAGHLATAVLR
IGKGLLQPKEATRRKDLRESQGFQTLLPQTLDLISTTSASTVHILDFLLG
LALLDYPLCSEFPTRHRVEQLYQSILAARANELSPGDISSLVWCWRKFHL
DVERLPPHFIEVTSALPFRVLIGALSGGDGASESAELLDLAALRAEIDLQ
RDTIQLSPHKTVDESRLTAWQGTQPFFYSGKEMPAREMTARVARIRDRLA
VVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFC
LRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKG
KRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQT
LDGATQDERYWIATYLSMKDEGKRTAGSI

mRNA from alignment at CM002461.1:723288..725402+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3569 ID=rna3569|Name=rna3569|organism=Nannochloropsis gaditana|type=mRNA|length=2115bp|location=Sequence derived from alignment at CM002461.1:723288..725402+ (Nannochloropsis gaditana)
AGTGTGTTTTTAATAGAACTCCTGGGCTAACTAGTACTTTTCACATAATA
ACAAGAAAAACACAGCGCTAGTGATGGGCTCTTTCCCCAGTTTTACGGAT
GAGGACGGCTCAGCTCCAGTGAAAGCGCAAGATTAGCCTTCTCAGCGGCC
GAGTTGCACATGGCCCGGCAAAGCAGAATACGCTCCCCTAACCATACCAT
CTCCGCGCTTGCACTCCGCCACGTTGCCGTCCTTCTGTTTCTTCTAAGTA
GACAAATAAATGCTTTCTTGCCGGGCCATGTCCttttccgcccgccctcc
agcTTCCATATTCCTGTCGTGTCTTCTCGTCCAAGCACCCCTGTAGAGAC
CCCCGCCCAACGTGTTCAGCATGCTCTCGCACCTGAAGACATCCTCTCCA
ATGCTGTGATGAACATGAAATATCTGAAAGCTGGTCACCTTGCCACTGCC
GTGCTTCGCATCGGTAAGGGATTGCTCCAACCGAAGGAAGCTACTCGACG
CAAAGATTTAAGGGAAAGCCAGGGTTTTCAGACCCTTCTACCTCAGACCT
TGGATTTGATTTCTACAACTAGCGCCAGCACCGTGCACATTTTGGATTTT
CTTCTAGGATTAGCCTTGCTTGATTATCCACTTTGCAGTGAATTTCCCAC
CAGGCATCGCGTCGAGCAATTATACCAGAGCATTCTGGCAGCACGCGCAA
ATGAGCTATCTCCGGGAGATATTTCCAGTTTAGTATGGTGCTGGCGGAAA
TTTCATCTTGATGTTGagcgtctccctcctcatttcaTAGAGGTGACATC
CGCGTTACCATTTCGTGTCTTGATCGGTGCGCTCTCCGGGGGGGACGGTG
CAAGTGAGTCGGCGGAGCTCTTGGATTTAGCTGCCCTACGAGCAGAAATA
GATCTGCAGCGAGATACCATCCAATTGTCTCCACATAAAACTGTCGACGA
ATCCCGTCTTACCGCATGGCAGGGCACTCAGCCTTTCTTCTACAGCGGCA
AAGAGATGCCCGCCCGGGAGATGACCGCGCGCGTGGCCCGCATTCGAGAC
CGGCTGGCGGTTGTGACGGGGGTGTATTATGATTGCGTGCTAATCAACCT
GTACGAGACAGGGAAGGTCGGCATGCGCTACCATGTGGATCCGGATCAAG
GTGAGAGCATGGGTCATACCTCGGTGTATGTCCTCGCGCGTGCCTGTGTA
TACCTGATAGAGTCTCGACAAGGACCTGTGCAGGGGTTCCTTTACCATGT
CATAAACGGCCATCTCTCTCTATATACATGAACTAACCACCGATGTTCTT
TACCTTTTGTTACATATATATAGTCATGAACTAACCACCGATATTCTTGA
CGTTTTCTTGATCATAATGGAAAGGGATCTATTTCTCCACAAACACGGTA
GTAGTAAGCGTGGGCGACACCAGAGAATTTTGCCTACGGTCGATAGcaga
ggaggtagaagaagaggtgggcCCGAAGGGAATtagaggcgagggagaaa
agggcagCGCAGGTGCTGACAAATCGCACAGAAAAAGCCAGGACAGGTCG
GCAAGTGCGAAAACGgtagagggaaggaagggaaagagggccacCCATCA
TCGCTTCTTTGTTGCGCAAAGTGACGCTGTAGAGATGACTCGTGAGTGCC
AGTGGCGCTATCAACACGCTGTCAAAGTCTGCGAGCATGCGGAGGACGCC
GGTGCGCGCATGAGTTTGGTGTTCAAGCAAACTTTGGACGGAGCGACCCA
GGACGAGCGGTATTGGATTGCCACCTACTTGTCCATGAAAGACGAGGGAA
AGCGTACAGCAGGAAGCATCTAATCATACAATGATAGTCTCAGTACAACT
ATCAGTCGGTAGATGAAATACTTGTACGTCATGAATTGTAGAGGTAGGTT
AACGCAAATTTTCTGTACTTGTTTGTCTTGTGACGAGTTGCTGGCGTCGT
TAAGAACCCCAAAGAAATTACAGCCCTTTGCACGGAATTGGCAAATGATG
CTGTTCCTCGGGACTCTCAAACATCACTCTCAAGGCACTGAGGTTAACTC
GTTCTAAACAGAGGCCCTCTCTTCGCAATATGCCTTTTCACGACCTGCCG
AAGAAAATCACATCC

Coding sequence (CDS) from alignment at CM002461.1:723288..725402+

>rna3569 ID=rna3569|Name=rna3569|organism=Nannochloropsis gaditana|type=CDS|length=2880bp|location=Sequence derived from alignment at CM002461.1:723288..725402+ (Nannochloropsis gaditana)
ATGGCCCGGCAAAGCAGAATACGCTCCCCTAACCATACCATCTCCGCGCT
TGCACTCCGCCACGTTGCCGTCCTTCTGTTTCTTCTAAGTAGACAAATAA
ATGCTTTCTTGCCGGGCCATGTCCttttccgcccgccctccagcTTCCAT
ATTCCTGTCGTGTCTTCTCGTCCAAGCACCCCTGTAGAGACCCCCGCCCA
ACGTGTTCAGCATGCTCTCGCACCTGAAGACATCCTCTCCAATGCTGTGA
TGAACATGAAATATCTGAAAGCTGGTCACCTTGCCACTGCCGTGCTTCGC
ATCGGTAAGGGATTGCTCCAACCGAAGGAAGCTACTCGACGCAAAGATTT
AAGGGAAAGCCAGGGTTTTCAGACCCTTCTACCTCAGACCTTGGATTTGA
TTTCTACAACTAGCGCCAGCACCGTGCACATTTTGGATTTTCTTCTAGGA
TTAGCCTTGCTTGATTATCCACTTTGCAGTGAATTTCCCACCAGGCATCG
CGTCGAGCAATTATACCAGAGCATTCTGGCAGCACGCGCAAATGAGCTAT
CTCCGGGAGATATTTCCAGTTTAGTATGGTGCTGGCGGAAATTTCATCTT
GATGTTGagcgtctccctcctcatttcaTAGAGGTGACATCCGCGTTACC
ATTTCGTGTCTTGATCGGTGCGCTCTCCGGGGGGGACGGTGCAAGTGAGT
CGGCGGAGCTCTTGGATTTAGCTGCCCTACGAGCAGAAATAGATCTGCAG
CGAGATACCATCCAATTGTCTCCACATAAAACTGTCGACGAATCCCGTCT
TACCGCATGGCAGGGCACTCAGCCTTTCTTCTACAGCGGCAAAGAGATGC
CCGCCCGGGAGATGACCGCGCGCGTGGCCCGCATTCGAGACCGGCTGGCG
GTTGTGACGGGGGTGTATTATGATTGCGTGCTAATCAACCTGTACGAGAC
AGGGAAGGTCGGCATGCGCTACCATGTGGATCCGGATCAAGGGATCTATT
TCTCCACAAACACGGTAGTAGTAAGCGTGGGCGACACCAGAGAATTTTGC
CTACGGTCGATAGcagaggaggtagaagaagaggtgggcCCGAAGGGAAT
tagaggcgagggagaaaagggcagCGCAGGTGCTGACAAATCGCACAGAA
AAAGCCAGGACAGGTCGGCAAGTGCGAAAACGgtagagggaaggaaggga
aagagggccacCCATCATCGCTTCTTTGTTGCGCAAAGTGACGCTGTAGA
GATGACTCGTGAGTGCCAGTGGCGCTATCAACACGCTGTCAAAGTCTGCG
AGCATGCGGAGGACGCCGGTGCGCGCATGAGTTTGGTGTTCAAGCAAACT
TTGGACGGAGCGACCCAGGACGAGCGGTATTGGATTGCCACCTACTTGTC
CATGAAAGACGAGGGAAAGCGTACAGCAGGAAGCATCTAAATGGCCCGGC
AAAGCAGAATACGCTCCCCTAACCATACCATCTCCGCGCTTGCACTCCGC
CACGTTGCCGTCCTTCTGTTTCTTCTAAGTAGACAAATAAATGCTTTCTT
GCCGGGCCATGTCCttttccgcccgccctccagcTTCCATATTCCTGTCG
TGTCTTCTCGTCCAAGCACCCCTGTAGAGACCCCCGCCCAACGTGTTCAG
CATGCTCTCGCACCTGAAGACATCCTCTCCAATGCTGTGATGAACATGAA
ATATCTGAAAGCTGGTCACCTTGCCACTGCCGTGCTTCGCATCGGTAAGG
GATTGCTCCAACCGAAGGAAGCTACTCGACGCAAAGATTTAAGGGAAAGC
CAGGGTTTTCAGACCCTTCTACCTCAGACCTTGGATTTGATTTCTACAAC
TAGCGCCAGCACCGTGCACATTTTGGATTTTCTTCTAGGATTAGCCTTGC
TTGATTATCCACTTTGCAGTGAATTTCCCACCAGGCATCGCGTCGAGCAA
TTATACCAGAGCATTCTGGCAGCACGCGCAAATGAGCTATCTCCGGGAGA
TATTTCCAGTTTAGTATGGTGCTGGCGGAAATTTCATCTTGATGTTGagc
gtctccctcctcatttcaTAGAGGTGACATCCGCGTTACCATTTCGTGTC
TTGATCGGTGCGCTCTCCGGGGGGGACGGTGCAAGTGAGTCGGCGGAGCT
CTTGGATTTAGCTGCCCTACGAGCAGAAATAGATCTGCAGCGAGATACCA
TCCAATTGTCTCCACATAAAACTGTCGACGAATCCCGTCTTACCGCATGG
CAGGGCACTCAGCCTTTCTTCTACAGCGGCAAAGAGATGCCCGCCCGGGA
GATGACCGCGCGCGTGGCCCGCATTCGAGACCGGCTGGCGGTTGTGACGG
GGGTGTATTATGATTGCGTGCTAATCAACCTGTACGAGACAGGGAAGGTC
GGCATGCGCTACCATGTGGATCCGGATCAAGGGATCTATTTCTCCACAAA
CACGGTAGTAGTAAGCGTGGGCGACACCAGAGAATTTTGCCTACGGTCGA
TAGcagaggaggtagaagaagaggtgggcCCGAAGGGAATtagaggcgag
ggagaaaagggcagCGCAGGTGCTGACAAATCGCACAGAAAAAGCCAGGA
CAGGTCGGCAAGTGCGAAAACGgtagagggaaggaagggaaagagggcca
cCCATCATCGCTTCTTTGTTGCGCAAAGTGACGCTGTAGAGATGACTCGT
GAGTGCCAGTGGCGCTATCAACACGCTGTCAAAGTCTGCGAGCATGCGGA
GGACGCCGGTGCGCGCATGAGTTTGGTGTTCAAGCAAACTTTGGACGGAG
CGACCCAGGACGAGCGGTATTGGATTGCCACCTACTTGTCCATGAAAGAC
GAGGGAAAGCGTACAGCAGGAAGCATCTAA

Synonyms

Publications