EWM27087.1, cds3560 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|585109264|gb|EWM27087.1| (alkylated dna repair protein [Nannochloropsis gaditana]) HSP 1 Score: 989.564 bits (2557), Expect = 0.000e+0 Identity = 479/479 (100.00%), Postives = 479/479 (100.00%), Query Frame = 0
Query: 1 MARQSRIRSPNHTISALALRHVAVLLFLLSRQINAFLPGHVLFRPPSSFHIPVVSSRPSTPVETPAQRVQHALAPEDILSNAVMNMKYLKAGHLATAVLRIGKGLLQPKEATRRKDLRESQGFQTLLPQTLDLISTTSASTVHILDFLLGLALLDYPLCSEFPTRHRVEQLYQSILAARANELSPGDISSLVWCWRKFHLDVERLPPHFIEVTSALPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQGTQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTLDGATQDERYWIATYLSMKDEGKRTAGSI 479
MARQSRIRSPNHTISALALRHVAVLLFLLSRQINAFLPGHVLFRPPSSFHIPVVSSRPSTPVETPAQRVQHALAPEDILSNAVMNMKYLKAGHLATAVLRIGKGLLQPKEATRRKDLRESQGFQTLLPQTLDLISTTSASTVHILDFLLGLALLDYPLCSEFPTRHRVEQLYQSILAARANELSPGDISSLVWCWRKFHLDVERLPPHFIEVTSALPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQGTQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTLDGATQDERYWIATYLSMKDEGKRTAGSI
Sbjct: 1 MARQSRIRSPNHTISALALRHVAVLLFLLSRQINAFLPGHVLFRPPSSFHIPVVSSRPSTPVETPAQRVQHALAPEDILSNAVMNMKYLKAGHLATAVLRIGKGLLQPKEATRRKDLRESQGFQTLLPQTLDLISTTSASTVHILDFLLGLALLDYPLCSEFPTRHRVEQLYQSILAARANELSPGDISSLVWCWRKFHLDVERLPPHFIEVTSALPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQGTQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTLDGATQDERYWIATYLSMKDEGKRTAGSI 479
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|299473601|emb|CBN77996.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 143.665 bits (361), Expect = 4.248e-34 Identity = 91/240 (37.92%), Postives = 115/240 (47.92%), Query Frame = 0
Query: 216 LPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQGTQ--PFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTLDG 453
LPFR + G L + R E+ +RD I L K + ESRLTAWQ + PF YSGK M + V R+RD L TGV YD VL+NLYE+ MRYH DPD G ++ +T VVSVGDTR+F LR + P+G H F+++ D V MT CQ YQH VKV + E+ GAR+SLVFKQ++ G
Sbjct: 267 LPFRAIPSLFEG----------LRVEDFRDEVAFRRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMEPTSFSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRQFALRRTLDH-----SPRG--------------------------------------RHAFYLSSGDCVRMTDGCQRDYQHCVKVAK--EEVGARISLVFKQSISG 451
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|219113643|ref|XP_002186405.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583255|gb|ACI65875.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 127.872 bits (320), Expect = 3.896e-29 Identity = 84/276 (30.43%), Postives = 121/276 (43.84%), Query Frame = 0
Query: 181 NELSPGDISSLVWCWRKFHLDVERLPPHFIEVTSA---LPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQG---TQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQT 450
++L P S + W + L P ++ A LPF ++ G L+G E L + L +++ + D I+ + +K V E R TAW+G PF YSGK MP + + V ++RD + T YY+ L+NLY G GMRYH+DPDQG + +T VVSVG +R F R+++ + H F V D M ECQ ++QH VK + D R SLVFK+T
Sbjct: 155 SQLEPHHTSGVKWAFDVLTLQSSAPSPTALDQAYADLNLPFAIIPGCLAG-------LESLSVDRLTSQVHFRVDDIRTTSNKVVSERRQTAWEGDTGVAPFTYSGKAMPRSDWSPLVVQVRDVVQARTNQYYNGCLLNLYTDGCSGMRYHIDPDQGTLWDYDTAVVSVGASRRFAFRAMSSSTLQP--------------------------------------------HNFVVMHGDLTYMFGECQSQFQHTVKKADDKTDTTPRASLVFKRT 379
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|1210521988|dbj|GAX19423.1| (hypothetical protein FisN_4Lh404 [Fistulifera solaris]) HSP 1 Score: 124.405 bits (311), Expect = 3.070e-28 Identity = 81/238 (34.03%), Postives = 108/238 (45.38%), Query Frame = 0
Query: 216 LPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQG---TQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQT 450
LPFR++ G D +E L + L + ++ + D++ S K V E R TAW+G +PF YSGK MP + V RIRD L Y+DC L+NLY GK MRYH+DPDQG + +TVVVSVG +R F R E E+ H F V D M +CQ +QHAVK + + AR S+VFK++
Sbjct: 133 LPFRIIPGFC---DHVTE----LSVPDLASHVNFRIDSVHTSTQKVVKERRETAWEGDEGVEPFKYSGKSMPRDAFSPTVRRIRDLLDERMDQYFDCCLLNLYPDGKSAMRYHIDPDQGSLWDFDTVVVSVGASRRFSFRRNNSESEKP--------------------------------------------HTFVVMHGDVTFMYGDCQDTFQHAVKKADIKSEQCARASMVFKRS 319
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|926780066|ref|XP_013898507.1| (DNA repair system specific for alkylated DNA [Monoraphidium neglectum] >gi|761968209|gb|KIY99487.1| DNA repair system specific for alkylated DNA [Monoraphidium neglectum]) HSP 1 Score: 124.79 bits (312), Expect = 1.239e-27 Identity = 93/245 (37.96%), Postives = 117/245 (47.76%), Query Frame = 0
Query: 216 LPFRVLIGALSGGDGASESAELLDLAALRAEID--LQRDTIQL-SPHKTVDESRLTAWQGT--QPFFYSGKEMP--AREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIY--FSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTL 451
+PFRVL AL L L E+ L+RD I L + V+E+RLT WQ F YSGKEM A +T VA +RDRL ++TG +YD VL+NLYE GK GMRYHVDP +Y ++ NT VVS+G TR+F R A+ A + V+ D VEM +CQ R QH +KV A DAG R+SLVFKQ +
Sbjct: 235 VPFRVLPCALQD----------LRLPDFLEELGPALRRDVIYLDGGARAVEEARLTGWQSDIGATFKYSGKEMAPLAGGLTPHVAAVRDRLLLLTGQHYDSVLVNLYEDGKCGMRYHVDP---LYDAWTPNTAVVSLGATRQFVFRDAADH---------------------------------------------ACRWSYPVSNGDVVEMFGDCQERLQHCIKVERRARDAGPRISLVFKQRI 421
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|1210512549|dbj|GAX28406.1| (hypothetical protein FisN_4Hh404 [Fistulifera solaris]) HSP 1 Score: 123.635 bits (309), Expect = 2.233e-27 Identity = 79/238 (33.19%), Postives = 106/238 (44.54%), Query Frame = 0
Query: 216 LPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQG---TQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQT 450
LPFR+L G + E L + L ++++ + D++ S + V E R TAW+G + F YSGK MP + V R+RD L Y+DC L+NLY GK MRYH+DPDQG + +TVVVSVG +R F R E E H F V D M +CQ +QHAVK + + AR SLVFK++
Sbjct: 216 LPFRIL-------PGLCDHVEELSVPDLASQVNFRIDSVYTSSQEIVKERRQTAWEGDEGVESFKYSGKSMPRDAFSPTVKRVRDLLDERMDQYFDCCLLNLYPDGKSAMRYHIDPDQGSLWDFDTVVVSVGASRRFSFRRNNAESERP--------------------------------------------HTFVVMHGDVTHMYGDCQDTFQHAVKKADIKSEQCARASLVFKRS 402
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|1072223146|gb|OEU07903.1| (hemopexin domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 121.324 bits (303), Expect = 1.574e-26 Identity = 73/218 (33.49%), Postives = 103/218 (47.25%), Query Frame = 0
Query: 237 LLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQG---TQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTL 451
L +A+ +++ Q +TIQ + ++TV E R TAW+G + F YS K M + VA +RDRL T YYD L+N Y G MRYH+DPDQG+ + T VVS+G TR F R S+ D S++ H F + D EM +CQ R+QH V+ ++ +R+SLVFK+TL
Sbjct: 220 LFTVASFVKQVNFQIETIQTATNRTVAERRQTAWEGDEHVENFEYSEKSMRRLPWSDVVANVRDRLYNETSHYYDGCLLNFYPDGDSAMRYHIDPDQGVLWDYETAVVSIGATRRFSFRE---------------------SSSGDGSNKP---------------------HVFVLMNGDVTEMFNDCQERFQHTVQKSSVKGESASRVSLVFKKTL 395
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|302836187|ref|XP_002949654.1| (hypothetical protein VOLCADRAFT_104423 [Volvox carteri f. nagariensis] >gi|300265013|gb|EFJ49206.1| hypothetical protein VOLCADRAFT_104423 [Volvox carteri f. nagariensis]) HSP 1 Score: 123.635 bits (309), Expect = 2.470e-26 Identity = 85/225 (37.78%), Postives = 110/225 (48.89%), Query Frame = 0
Query: 238 LDLAALRAEIDLQRDTIQLSPH-KTVDESRLTAWQGT--QPFFYSGKEMPARE--MTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIY--FSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTLDGAT 455
L L +E++L+RDTI L + V+ESR T WQ F YSGKEM + ++ + ++RDRL +TGV YD VLIN Y GK GMRYHVDP +Y ++ N+ VVS+GDTR F R+I + T + V D V M +CQ R QH V+V + A DAG RMSLVFK+ L G T
Sbjct: 583 LRLNDFMSEVELRRDTIYLDDGGRAVEESRRTGWQSEIGATFRYSGKEMQPQPGGLSTHIRQVRDRLWELTGVKYDSVLINYYADGKCGMRYHVDP---LYDRWTPNSAVVSLGDTRAFIFRAINDH---------------------------------------------NTRWHYRVRNGDVVLMFDDCQDRLQHCVRVEKRAADAGPRMSLVFKERLRGPT 759
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|159474986|ref|XP_001695604.1| (hypothetical protein CHLREDRAFT_175223 [Chlamydomonas reinhardtii] >gi|158275615|gb|EDP01391.1| predicted protein [Chlamydomonas reinhardtii]) HSP 1 Score: 114.39 bits (285), Expect = 3.567e-23 Identity = 87/241 (36.10%), Postives = 107/241 (44.40%), Query Frame = 0
Query: 215 ALPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQGTQPFFYSGKEM--PAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTLDG 453
A+PF V+ + G L L AE+ L RD I L D S+ YSGKEM MT V ++RD L +TGV+YD VLIN Y GK GMRYHVDP G++ S + VVS+GDTR F R I +D + R ++ V D V M +CQ R QH V+V AEDAG RMSLVFK+ L G
Sbjct: 325 AVPFAVVPQFMPG----------LKLQDFMAEVRLNRDVIYLE-----DGSK-----------YSGKEMVPDPSGMTPAVRKVRDELQRLTGVWYDSVLINYYGDGKCGMRYHVDPLYGVW-SPESAVVSIGDTRTFIFREI-----------------------SDYNSR----------------------WQYRVRNGDVVRMWGDCQDRLQHCVRVERAAEDAGPRMSLVFKERLRG 493
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|551669479|ref|XP_005837498.1| (hypothetical protein GUITHDRAFT_103750 [Guillardia theta CCMP2712] >gi|428181655|gb|EKX50518.1| hypothetical protein GUITHDRAFT_103750 [Guillardia theta CCMP2712]) HSP 1 Score: 107.842 bits (268), Expect = 3.944e-22 Identity = 89/282 (31.56%), Postives = 119/282 (42.20%), Query Frame = 0
Query: 176 LAARANELSPGDISSLVWCWRKFHLD--VERLPPH-FIEVTSALPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAW---QGTQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTL 451
+ R LS D ++ W R+ H+D V+RL F E+ ALPF + IG D A ++ LR EI + + + + V E R T W +G YSGK M T V R+RD L T V YDC LINLY G ++H DPD G +S S G+TR F LR I E PK Q+ K F V + D + M R+CQ ++H V E + G R+S+VFK+ L
Sbjct: 113 VCERLENLSSSDKATFDWACRRLHVDERVQRLAGEAFKEL--ALPFSISIG-----DSAGILEDVASFEELRKEIPFKAEKLLTRDGRQVLERRETCWMAEEGIGGLAYSGKIMSPTPFTPAVTRVRDVLFERTNVRYDCCLINLYPDGDSACKWHTDPDHGRLWSLE--ATSFGETRRFNLRRIPE-------PKS------------------RQEEEEEEK------------FSFHVFEGDTMHMFRDCQDTFEHCVLKAEGEHNLGPRISIVFKKAL 348 The following BLAST results are available for this feature:
BLAST of EWM27087.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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