EWM27087.1, cds3560 (CDS) Nannochloropsis gaditana

Overview
NameEWM27087.1
Unique Namecds3560
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:723447..724437 +
Alignment locationCM002461.1:724662..725110 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27087.1
Productalkylated dna repair protein
Orig transcript idgnl|cribi|Naga_100046g15.5126.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:723447..724437 +
CM002461.1supercontigCM002461.1:724662..725110 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016706oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR005123Oxoglu/Fe-dep_dioxygenase
IPR027450AlkB-like
Homology
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|585109264|gb|EWM27087.1| (alkylated dna repair protein [Nannochloropsis gaditana])

HSP 1 Score: 989.564 bits (2557), Expect = 0.000e+0
Identity = 479/479 (100.00%), Postives = 479/479 (100.00%), Query Frame = 0
Query:    1 MARQSRIRSPNHTISALALRHVAVLLFLLSRQINAFLPGHVLFRPPSSFHIPVVSSRPSTPVETPAQRVQHALAPEDILSNAVMNMKYLKAGHLATAVLRIGKGLLQPKEATRRKDLRESQGFQTLLPQTLDLISTTSASTVHILDFLLGLALLDYPLCSEFPTRHRVEQLYQSILAARANELSPGDISSLVWCWRKFHLDVERLPPHFIEVTSALPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQGTQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTLDGATQDERYWIATYLSMKDEGKRTAGSI 479
            MARQSRIRSPNHTISALALRHVAVLLFLLSRQINAFLPGHVLFRPPSSFHIPVVSSRPSTPVETPAQRVQHALAPEDILSNAVMNMKYLKAGHLATAVLRIGKGLLQPKEATRRKDLRESQGFQTLLPQTLDLISTTSASTVHILDFLLGLALLDYPLCSEFPTRHRVEQLYQSILAARANELSPGDISSLVWCWRKFHLDVERLPPHFIEVTSALPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQGTQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTLDGATQDERYWIATYLSMKDEGKRTAGSI
Sbjct:    1 MARQSRIRSPNHTISALALRHVAVLLFLLSRQINAFLPGHVLFRPPSSFHIPVVSSRPSTPVETPAQRVQHALAPEDILSNAVMNMKYLKAGHLATAVLRIGKGLLQPKEATRRKDLRESQGFQTLLPQTLDLISTTSASTVHILDFLLGLALLDYPLCSEFPTRHRVEQLYQSILAARANELSPGDISSLVWCWRKFHLDVERLPPHFIEVTSALPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQGTQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTLDGATQDERYWIATYLSMKDEGKRTAGSI 479          
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|299473601|emb|CBN77996.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 143.665 bits (361), Expect = 4.248e-34
Identity = 91/240 (37.92%), Postives = 115/240 (47.92%), Query Frame = 0
Query:  216 LPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQGTQ--PFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTLDG 453
            LPFR +     G          L +   R E+  +RD I L   K + ESRLTAWQ +   PF YSGK M     +  V R+RD L   TGV YD VL+NLYE+    MRYH DPD G  ++ +T VVSVGDTR+F LR   +       P+G                                       H F+++  D V MT  CQ  YQH VKV +  E+ GAR+SLVFKQ++ G
Sbjct:  267 LPFRAIPSLFEG----------LRVEDFRDEVAFRRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMEPTSFSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRQFALRRTLDH-----SPRG--------------------------------------RHAFYLSSGDCVRMTDGCQRDYQHCVKVAK--EEVGARISLVFKQSISG 451          
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|219113643|ref|XP_002186405.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583255|gb|ACI65875.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 127.872 bits (320), Expect = 3.896e-29
Identity = 84/276 (30.43%), Postives = 121/276 (43.84%), Query Frame = 0
Query:  181 NELSPGDISSLVWCWRKFHLDVERLPPHFIEVTSA---LPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQG---TQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQT 450
            ++L P   S + W +    L      P  ++   A   LPF ++ G L+G        E L +  L +++  + D I+ + +K V E R TAW+G     PF YSGK MP  + +  V ++RD +   T  YY+  L+NLY  G  GMRYH+DPDQG  +  +T VVSVG +R F  R+++    +                                             H F V   D   M  ECQ ++QH VK  +   D   R SLVFK+T
Sbjct:  155 SQLEPHHTSGVKWAFDVLTLQSSAPSPTALDQAYADLNLPFAIIPGCLAG-------LESLSVDRLTSQVHFRVDDIRTTSNKVVSERRQTAWEGDTGVAPFTYSGKAMPRSDWSPLVVQVRDVVQARTNQYYNGCLLNLYTDGCSGMRYHIDPDQGTLWDYDTAVVSVGASRRFAFRAMSSSTLQP--------------------------------------------HNFVVMHGDLTYMFGECQSQFQHTVKKADDKTDTTPRASLVFKRT 379          
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|1210521988|dbj|GAX19423.1| (hypothetical protein FisN_4Lh404 [Fistulifera solaris])

HSP 1 Score: 124.405 bits (311), Expect = 3.070e-28
Identity = 81/238 (34.03%), Postives = 108/238 (45.38%), Query Frame = 0
Query:  216 LPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQG---TQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQT 450
            LPFR++ G     D  +E    L +  L + ++ + D++  S  K V E R TAW+G    +PF YSGK MP    +  V RIRD L      Y+DC L+NLY  GK  MRYH+DPDQG  +  +TVVVSVG +R F  R    E E+                                             H F V   D   M  +CQ  +QHAVK  +   +  AR S+VFK++
Sbjct:  133 LPFRIIPGFC---DHVTE----LSVPDLASHVNFRIDSVHTSTQKVVKERRETAWEGDEGVEPFKYSGKSMPRDAFSPTVRRIRDLLDERMDQYFDCCLLNLYPDGKSAMRYHIDPDQGSLWDFDTVVVSVGASRRFSFRRNNSESEKP--------------------------------------------HTFVVMHGDVTFMYGDCQDTFQHAVKKADIKSEQCARASMVFKRS 319          
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|926780066|ref|XP_013898507.1| (DNA repair system specific for alkylated DNA [Monoraphidium neglectum] >gi|761968209|gb|KIY99487.1| DNA repair system specific for alkylated DNA [Monoraphidium neglectum])

HSP 1 Score: 124.79 bits (312), Expect = 1.239e-27
Identity = 93/245 (37.96%), Postives = 117/245 (47.76%), Query Frame = 0
Query:  216 LPFRVLIGALSGGDGASESAELLDLAALRAEID--LQRDTIQL-SPHKTVDESRLTAWQGT--QPFFYSGKEMP--AREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIY--FSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTL 451
            +PFRVL  AL            L L     E+   L+RD I L    + V+E+RLT WQ      F YSGKEM   A  +T  VA +RDRL ++TG +YD VL+NLYE GK GMRYHVDP   +Y  ++ NT VVS+G TR+F  R  A+                                              A    + V+  D VEM  +CQ R QH +KV   A DAG R+SLVFKQ +
Sbjct:  235 VPFRVLPCALQD----------LRLPDFLEELGPALRRDVIYLDGGARAVEEARLTGWQSDIGATFKYSGKEMAPLAGGLTPHVAAVRDRLLLLTGQHYDSVLVNLYEDGKCGMRYHVDP---LYDAWTPNTAVVSLGATRQFVFRDAADH---------------------------------------------ACRWSYPVSNGDVVEMFGDCQERLQHCIKVERRARDAGPRISLVFKQRI 421          
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|1210512549|dbj|GAX28406.1| (hypothetical protein FisN_4Hh404 [Fistulifera solaris])

HSP 1 Score: 123.635 bits (309), Expect = 2.233e-27
Identity = 79/238 (33.19%), Postives = 106/238 (44.54%), Query Frame = 0
Query:  216 LPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQG---TQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQT 450
            LPFR+L        G  +  E L +  L ++++ + D++  S  + V E R TAW+G    + F YSGK MP    +  V R+RD L      Y+DC L+NLY  GK  MRYH+DPDQG  +  +TVVVSVG +R F  R    E E                                              H F V   D   M  +CQ  +QHAVK  +   +  AR SLVFK++
Sbjct:  216 LPFRIL-------PGLCDHVEELSVPDLASQVNFRIDSVYTSSQEIVKERRQTAWEGDEGVESFKYSGKSMPRDAFSPTVKRVRDLLDERMDQYFDCCLLNLYPDGKSAMRYHIDPDQGSLWDFDTVVVSVGASRRFSFRRNNAESERP--------------------------------------------HTFVVMHGDVTHMYGDCQDTFQHAVKKADIKSEQCARASLVFKRS 402          
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|1072223146|gb|OEU07903.1| (hemopexin domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 121.324 bits (303), Expect = 1.574e-26
Identity = 73/218 (33.49%), Postives = 103/218 (47.25%), Query Frame = 0
Query:  237 LLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQG---TQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTL 451
            L  +A+   +++ Q +TIQ + ++TV E R TAW+G    + F YS K M     +  VA +RDRL   T  YYD  L+N Y  G   MRYH+DPDQG+ +   T VVS+G TR F  R                      S+  D S++                      H F +   D  EM  +CQ R+QH V+      ++ +R+SLVFK+TL
Sbjct:  220 LFTVASFVKQVNFQIETIQTATNRTVAERRQTAWEGDEHVENFEYSEKSMRRLPWSDVVANVRDRLYNETSHYYDGCLLNFYPDGDSAMRYHIDPDQGVLWDYETAVVSIGATRRFSFRE---------------------SSSGDGSNKP---------------------HVFVLMNGDVTEMFNDCQERFQHTVQKSSVKGESASRVSLVFKKTL 395          
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|302836187|ref|XP_002949654.1| (hypothetical protein VOLCADRAFT_104423 [Volvox carteri f. nagariensis] >gi|300265013|gb|EFJ49206.1| hypothetical protein VOLCADRAFT_104423 [Volvox carteri f. nagariensis])

HSP 1 Score: 123.635 bits (309), Expect = 2.470e-26
Identity = 85/225 (37.78%), Postives = 110/225 (48.89%), Query Frame = 0
Query:  238 LDLAALRAEIDLQRDTIQLSPH-KTVDESRLTAWQGT--QPFFYSGKEMPARE--MTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIY--FSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTLDGAT 455
            L L    +E++L+RDTI L    + V+ESR T WQ      F YSGKEM  +   ++  + ++RDRL  +TGV YD VLIN Y  GK GMRYHVDP   +Y  ++ N+ VVS+GDTR F  R+I +                                               T   + V   D V M  +CQ R QH V+V + A DAG RMSLVFK+ L G T
Sbjct:  583 LRLNDFMSEVELRRDTIYLDDGGRAVEESRRTGWQSEIGATFRYSGKEMQPQPGGLSTHIRQVRDRLWELTGVKYDSVLINYYADGKCGMRYHVDP---LYDRWTPNSAVVSLGDTRAFIFRAINDH---------------------------------------------NTRWHYRVRNGDVVLMFDDCQDRLQHCVRVEKRAADAGPRMSLVFKERLRGPT 759          
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|159474986|ref|XP_001695604.1| (hypothetical protein CHLREDRAFT_175223 [Chlamydomonas reinhardtii] >gi|158275615|gb|EDP01391.1| predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 114.39 bits (285), Expect = 3.567e-23
Identity = 87/241 (36.10%), Postives = 107/241 (44.40%), Query Frame = 0
Query:  215 ALPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQGTQPFFYSGKEM--PAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTLDG 453
            A+PF V+   + G          L L    AE+ L RD I L      D S+           YSGKEM      MT  V ++RD L  +TGV+YD VLIN Y  GK GMRYHVDP  G++ S  + VVS+GDTR F  R I                       +D + R                       ++ V   D V M  +CQ R QH V+V   AEDAG RMSLVFK+ L G
Sbjct:  325 AVPFAVVPQFMPG----------LKLQDFMAEVRLNRDVIYLE-----DGSK-----------YSGKEMVPDPSGMTPAVRKVRDELQRLTGVWYDSVLINYYGDGKCGMRYHVDPLYGVW-SPESAVVSIGDTRTFIFREI-----------------------SDYNSR----------------------WQYRVRNGDVVRMWGDCQDRLQHCVRVERAAEDAGPRMSLVFKERLRG 493          
BLAST of EWM27087.1 vs. NCBI_GenBank
Match: gi|551669479|ref|XP_005837498.1| (hypothetical protein GUITHDRAFT_103750 [Guillardia theta CCMP2712] >gi|428181655|gb|EKX50518.1| hypothetical protein GUITHDRAFT_103750 [Guillardia theta CCMP2712])

HSP 1 Score: 107.842 bits (268), Expect = 3.944e-22
Identity = 89/282 (31.56%), Postives = 119/282 (42.20%), Query Frame = 0
Query:  176 LAARANELSPGDISSLVWCWRKFHLD--VERLPPH-FIEVTSALPFRVLIGALSGGDGASESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAW---QGTQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTL 451
            +  R   LS  D ++  W  R+ H+D  V+RL    F E+  ALPF + IG     D A    ++     LR EI  + + +     + V E R T W   +G     YSGK M     T  V R+RD L   T V YDC LINLY  G    ++H DPD G  +S      S G+TR F LR I E       PK                    Q+     K              F V + D + M R+CQ  ++H V   E   + G R+S+VFK+ L
Sbjct:  113 VCERLENLSSSDKATFDWACRRLHVDERVQRLAGEAFKEL--ALPFSISIG-----DSAGILEDVASFEELRKEIPFKAEKLLTRDGRQVLERRETCWMAEEGIGGLAYSGKIMSPTPFTPAVTRVRDVLFERTNVRYDCCLINLYPDGDSACKWHTDPDHGRLWSLE--ATSFGETRRFNLRRIPE-------PKS------------------RQEEEEEEK------------FSFHVFEGDTMHMFRDCQDTFEHCVLKAEGEHNLGPRISIVFKKAL 348          
The following BLAST results are available for this feature:
BLAST of EWM27087.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109264|gb|EWM27087.1|0.000e+0100.00alkylated dna repair protein [Nannochloropsis gadi... [more]
gi|299473601|emb|CBN77996.1|4.248e-3437.92conserved unknown protein [Ectocarpus siliculosus][more]
gi|219113643|ref|XP_002186405.1|3.896e-2930.43predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210521988|dbj|GAX19423.1|3.070e-2834.03hypothetical protein FisN_4Lh404 [Fistulifera sola... [more]
gi|926780066|ref|XP_013898507.1|1.239e-2737.96DNA repair system specific for alkylated DNA [Mono... [more]
gi|1210512549|dbj|GAX28406.1|2.233e-2733.19hypothetical protein FisN_4Hh404 [Fistulifera sola... [more]
gi|1072223146|gb|OEU07903.1|1.574e-2633.49hemopexin domain-containing protein, partial [Frag... [more]
gi|302836187|ref|XP_002949654.1|2.470e-2637.78hypothetical protein VOLCADRAFT_104423 [Volvox car... [more]
gi|159474986|ref|XP_001695604.1|3.567e-2336.10hypothetical protein CHLREDRAFT_175223 [Chlamydomo... [more]
gi|551669479|ref|XP_005837498.1|3.944e-2231.56hypothetical protein GUITHDRAFT_103750 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3569rna3569Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications