rna3567, rna3567 (mRNA) Nannochloropsis gaditana

Overview
Namerna3567
Unique Namerna3567
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1509
Alignment locationCM002461.1:718039..720568 -

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Properties
Property NameValue
Producttranscription factor e2fb
Orig transcript idgnl|cribi|Naga_100046g12.5131.mrna
Orig protein idgnl|cribi|Naga_100046g12.5131
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:718039..720568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100046g12gene3436Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27092.1cds3558Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3567rna3567-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3567 ID=rna3567|Name=rna3567|organism=Nannochloropsis gaditana|type=mRNA|length=1509bp
TTCCTTTGTCAACAGGCTTGCCGCATACCTTTTGGTAGCATTGCCTATAA
AGAAGGTGCCCAGGAGCAGATAGGGCGCCATGGTCAAGGACACCGTGGTT
CTCGACCTGGGCAGTGCTATCATAAAATGTGGATTCGCAGGAGAAAGCTC
ACCCCGACACCTGCTGCCATCCCCCTTGGATGATTGGAGCAGGCAAGCTG
CCTCCCGGGGATGGGGAAGTGAGGAATGGACGCAGTCCTTGGGCCCTTTG
CTGGTGAGACTGCTGGTGCATTGTTTGCATGTTCGCCCCTCCGAAAATAA
AGTGCTCATTTGCGAGCCACTTGCGGGATCGACAACGTTTCGAGAAGCTT
TGGCTTACGTCTTATTCCAGTGGCTCCGGGTGCCGGCGATCGTGATGGCT
CCCTCGTTGGAAATGCCGTTGTACACTGCCGGTGCGGAGACAGGCTTGGT
GGTGGACGTAGGCTTTCGCGAATCCCACGTCTTGGCGGTTGTCTTCGGGC
GGCCCCTCCTTCACACGTACGCAGTGGTAGGTATGGGGGCACTGACACTC
TTGGATCGAGCGCGGGAGCTTCTTGAGTCGGCTGCCACGGCGAAGAAGGA
AGGGGGATGCCTCTCCGGCCAAAGAGGCGACCGTCTCCCTCTAGAACTCC
TGCAAGACATCGTAATGCGAGCATGCTTCGTTGTGGGTAAGGAGGATTTT
CAAGTGGATGCCGAGCCCATCGCGTACGAAGAGAAGGGGTTTAAGCTGAC
CCTTACCCCCGAGCTACGAACTACGGTGGCCGAAGGTCTCTTCGCGGAAT
CCGTCGATGACGGGGAATCCCTCCCTATCGCGGTGCTGGAGTGTCTACGG
AGATGCCCCAGAGACGTGCGACGCCTGCTGGCCAGTCATGTGCTGGTGTC
GGGGGGCGTGGCGATGCTGCCCGGCTTCTGTCCTCGTCTGGCGGAAGAGG
TGCAGCAAAGGGCCAGGGTGCGCGTCCGCTATCAAGAGCTTTGTCCGCTC
TTGCTTGGACACCAGGGCACCTCTCGAGCCCACGAAGCCCTCGCGCCCTC
CGCGCATGCGCCGTCCATTCCCCCACCCCCAACGTCTTCTCGGGCATCTC
CTCCCAGTCCCAGTGCCCTCTGCCTCGTCGCCGGAGCCGCTCTCTTGGCT
CCGCGCAACGTCTTGGCATGGGTCGGGGGCTCTATTTACGCGGTCCTTGC
AGAGACCCTTCCGGCAGACGCCTCCCCATTCCTGTTCCGCGGCTCCTACA
TGACCGCTGTCTCGACGCGAGGCAGGTCCTCGCAAGACTCAGGGGAGGGG
CAGGGAGGCCGTGTCCCTGTGCTCCAAGAGGGGCTGTCCACGGCAGGGGG
AAGAGATGTCCTGAGCGACGGATCTCGGGACGTGTAATGGGCGATCGGAC
TTGTAAATGAAAAAGCACGAGATGGAATGCCGGCGTAGGAGGCCCCATTG
GACTCGCACCTGGCGGGACGCCGCGAGACGTTTATGCTCTGTGCTATTTC
TTCTTTTTC
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protein sequence of rna3567

>rna3567-protein ID=rna3567-protein|Name=rna3567|organism=Nannochloropsis gaditana|type=polypeptide|length=349bp
MDSSAGKMTSPVSVSKARASPSSRYDSSLGLLTKKFVELLQGQQARGDSL
DLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTS
VSRHGEGSVHSEDMRQLKQEMEDLKQEERDVKGHIQSMTALLQQEGEQNT
GLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQI
QLVSSNGPVDIYLVNAPEQGEGGEGGGGAGGGQAEASPRGRLDRSPNAGV
TGEGGSGRSKPAGHDEPQPASQGSYDLHSLPGAHSLQPHEMMGLSHHHNQ
LGGNGGILAYKPSPAPSPSVASGGMSDPVFQFGMTDAEGISEMWLTEES
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mRNA from alignment at CM002461.1:718039..720568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3567 ID=rna3567|Name=rna3567|organism=Nannochloropsis gaditana|type=mRNA|length=2530bp|location=Sequence derived from alignment at CM002461.1:718039..720568- (Nannochloropsis gaditana)
CTTAGGGTTGCGACTTGTGGACATATAGGATGCGCTGATTTAAGACACGA
AAGAAAGAAGAGTGGTCTCAGCAAGCACATCGAAAGCAGGCAGGGCCCGC
TCAACAGGCGCGCCACGACAAGGAAAGCGATAGAGCATGACTATGAGCTT
GACCACGCCGCAAAGATCTTCCCGAGGAAATAGTACCGGTAGCAGCGGCG
GTGGGAGCGGAACGAACGGAGGGAAGCGGGCTAAAATGGACTACAGCACC
TGTCATCCTTCTCCAGCGACCGGTTCAACCGGAGTATCAGCGGTGGCTCC
GTCATCGTCGCACATGTCGAAGAAGCGTGGCGGTGCACACAGTAATGGGG
GTCTGGTCAACGGCACAGCAGCGACGGGAACCGCTACCTCGGGAGGGGGG
GGAGGAGGGGGGCCCTTCCATCAGCTTCCTCGAACCTGCCGTCCGCCGCC
TCTGCTGGCGCCACTCCCGGTGGAATGGATAGCTCCGCCGGCAAGATGAC
GTCTCCTGTAAGCGTGTCCAAGGCACGGGCCTCTCCGAGCAGCCGCTACG
ACAGCTCTCTCGGGCTACTGACCAAGAAATTCGTGGAGCTGCTCCAAGGA
CAGCAGGCGCGCGGGGACTCCCTGGACCTCAACCAGGCCGCAGTGACGCT
GTCGGTGCAAAAGAGACGCATCTACGACATCACGAACGTCCTGGAAGGCA
TCGGGTTGATTGAAAAGAAGAGTAAGAACAACATTGCTTGGAGGGGCGCG
GCTGCGTCTGCCCTGAGCACCAGTGTGAGTCGCCACGGGGAAGGTAGCGT
GCATTCCGAGGACATGCGGCAATTAAAGCAGGAGATGGAGGATCTCAAAC
AGGAGGAGCGCGACGTGAAGGGCCACATCCAAAGCATGACCGCGCTGCTG
CAGCAGGAGGGCGAGCAGAACACAGGCCTCATGTACGTGACCCAGGAGGA
CCTGGGAAAGCTCCCCTGCTACGACGCCCAGACCGTCATCGCCATCCGGG
CCCCGCAAGGCACCACCCTGGAGGTGCCCGATCCGGACGAGGGGATGGCC
AACGGAGAGCGGAGGTATCAGATCCAGCTCGTGTCGAGCAACGGCCCGGT
GGACATTTACCTCGTGAACGCGCCAGAGCAAGGGGAGGGGGGCGAGGGCG
GGGGGGGGGCAGGGGGGGGGCAGGCGGAAGCTAGCCCTAGGGGGAGGTTG
GATAGGTCTCCAAATGCGGGGGTGACGGGGGAGGGTGGAAGCGGCAGGTC
GAAGCCGGCGGGGCACGACGAGCCGCAGCCGGCCTCCCAGGGCTCGTACG
ACCTGCACTCCCTCCCGGGCGCCCACTCGTTGCAGCCGCACGAGATGATG
GGTCTGAGCCACCACCACAATCAGCTGGGGGGAAACGGAGGCATCTTGGC
CTACAAGCCTTCGCCGGCGCCGTCCCCGTCCGTGGCTTCGGGGGGCATGA
GCGATCCTGTCTTCCAGTTCGGCATGACGGACGCGGAGGGTATATCAGAA
ATGTGGCTCACGGAGGAAAGTTAGCCGGTGATTGGAGGAGAGAGGCATTT
GGATCGCCTTGGGCTCGGGAGTGGCCGACGAAAGAAGTGCTGAATGGGAG
GGAAACGGTGCCGAGTGGGACTGAGAGGAGCCCTTGTATCCAAGTGCGGA
GGGATGAGGGAGAAGGGTGTGCGGAGGGACTGGGAAACCGACTGTGGGTG
GCGCCAGGACGCGGTGCCGAGTGGCGGATGAGGGGCGTCGAAGCGACGAA
GATGGAGAAATGCGCGGGAGCAAGCGCTTCAGGTACCCAGAGCAGCCAAG
GCGAGAGACTGACATGCGCACGTGCTCGCACGGCTGACACTAGTCGTGGT
GTGAGGGAGGAGCTTGGTCGGTAGGGGCGAGAGAGAAAGGGTGCGGTCGG
GGTGGGGGGTCGACGAGGCCGGAGAGGGAGGAGGAGGAGGAAGAGACAGA
AGATTTGTCGGTTTCGAGGACAAGATTTCCGAGACAGGAGATATGACTGC
GAGAAGAGAGAGAGAAGGGAGAAATTTGCGAATTTGACGAAGAAAGCGAA
CGAGAAGACGAAGAGAAAGTAGACAGGAGGGAAGAGTGTCAGAGGGGAAA
ACCAAGGGTGGGAATGACACATGAACAAGCACCCTCTCCTTCGTTGTCAG
CTCCAGTCAGAGGCAACGGAGAAAGAAGTGGTGCAGAGCAAGGAGGATAG
CAGAGCGCTCGAGGCGATGAGTGATTGATGAGACAACGTGTGGCACATAC
CTTTGCCCGAGGCCCTCCGCGGAGGATGCCAGTAAAAACTCACGCCAGGT
GGTGTCAAACTGTGTACATATATCATGAGACGGGATGGGAGGGAGCACTG
TAACACGAGACAGGAGAGAGGAGGCCGAGCTAGGGGATGGGGAAGGGAGT
TGAGATGGCAGATATGTCTTGCTTTCTGGACGGAGATAGACTTGAGTTCC
CCCCCCACCTGCGCCAAAATCAGCGTCAAACGTTAAAGGAAGCGACCCCC
GAAAAAGAAGAAATAGCACAGAGCATAAAC
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Coding sequence (CDS) from alignment at CM002461.1:718039..720568-

>rna3567 ID=rna3567|Name=rna3567|organism=Nannochloropsis gaditana|type=CDS|length=1050bp|location=Sequence derived from alignment at CM002461.1:718039..720568- (Nannochloropsis gaditana)
ATGGATAGCTCCGCCGGCAAGATGACGTCTCCTGTAAGCGTGTCCAAGGC
ACGGGCCTCTCCGAGCAGCCGCTACGACAGCTCTCTCGGGCTACTGACCA
AGAAATTCGTGGAGCTGCTCCAAGGACAGCAGGCGCGCGGGGACTCCCTG
GACCTCAACCAGGCCGCAGTGACGCTGTCGGTGCAAAAGAGACGCATCTA
CGACATCACGAACGTCCTGGAAGGCATCGGGTTGATTGAAAAGAAGAGTA
AGAACAACATTGCTTGGAGGGGCGCGGCTGCGTCTGCCCTGAGCACCAGT
GTGAGTCGCCACGGGGAAGGTAGCGTGCATTCCGAGGACATGCGGCAATT
AAAGCAGGAGATGGAGGATCTCAAACAGGAGGAGCGCGACGTGAAGGGCC
ACATCCAAAGCATGACCGCGCTGCTGCAGCAGGAGGGCGAGCAGAACACA
GGCCTCATGTACGTGACCCAGGAGGACCTGGGAAAGCTCCCCTGCTACGA
CGCCCAGACCGTCATCGCCATCCGGGCCCCGCAAGGCACCACCCTGGAGG
TGCCCGATCCGGACGAGGGGATGGCCAACGGAGAGCGGAGGTATCAGATC
CAGCTCGTGTCGAGCAACGGCCCGGTGGACATTTACCTCGTGAACGCGCC
AGAGCAAGGGGAGGGGGGCGAGGGCGGGGGGGGGGCAGGGGGGGGGCAGG
CGGAAGCTAGCCCTAGGGGGAGGTTGGATAGGTCTCCAAATGCGGGGGTG
ACGGGGGAGGGTGGAAGCGGCAGGTCGAAGCCGGCGGGGCACGACGAGCC
GCAGCCGGCCTCCCAGGGCTCGTACGACCTGCACTCCCTCCCGGGCGCCC
ACTCGTTGCAGCCGCACGAGATGATGGGTCTGAGCCACCACCACAATCAG
CTGGGGGGAAACGGAGGCATCTTGGCCTACAAGCCTTCGCCGGCGCCGTC
CCCGTCCGTGGCTTCGGGGGGCATGAGCGATCCTGTCTTCCAGTTCGGCA
TGACGGACGCGGAGGGTATATCAGAAATGTGGCTCACGGAGGAAAGTTAG
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Synonyms
Publications