EWM27092.1, cds3558 (CDS) Nannochloropsis gaditana

Overview
NameEWM27092.1
Unique Namecds3558
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:719045..720094 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27092.1
Producttranscription factor e2fb
Orig transcript idgnl|cribi|Naga_100046g12.5131.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:719045..720094 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005667transcription factor complex
Vocabulary: INTERPRO
TermDefinition
IPR015633E2F
IPR011991WHTH_DNA-bd_dom
IPR003316E2F_WHTH_DNA-bd_dom
Homology
BLAST of EWM27092.1 vs. NCBI_GenBank
Match: gi|585109269|gb|EWM27092.1| (transcription factor e2fb [Nannochloropsis gaditana])

HSP 1 Score: 709.523 bits (1830), Expect = 0.000e+0
Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 0
Query:    1 MDSSAGKMTSPVSVSKARASPSSRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSVSRHGEGSVHSEDMRQLKQEMEDLKQEERDVKGHIQSMTALLQQEGEQNTGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQGEGGEGGGGAGGGQAEASPRGRLDRSPNAGVTGEGGSGRSKPAGHDEPQPASQGSYDLHSLPGAHSLQPHEMMGLSHHHNQLGGNGGILAYKPSPAPSPSVASGGMSDPVFQFGMTDAEGISEMWLTEES 349
            MDSSAGKMTSPVSVSKARASPSSRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSVSRHGEGSVHSEDMRQLKQEMEDLKQEERDVKGHIQSMTALLQQEGEQNTGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQGEGGEGGGGAGGGQAEASPRGRLDRSPNAGVTGEGGSGRSKPAGHDEPQPASQGSYDLHSLPGAHSLQPHEMMGLSHHHNQLGGNGGILAYKPSPAPSPSVASGGMSDPVFQFGMTDAEGISEMWLTEES
Sbjct:    1 MDSSAGKMTSPVSVSKARASPSSRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSVSRHGEGSVHSEDMRQLKQEMEDLKQEERDVKGHIQSMTALLQQEGEQNTGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQGEGGEGGGGAGGGQAEASPRGRLDRSPNAGVTGEGGSGRSKPAGHDEPQPASQGSYDLHSLPGAHSLQPHEMMGLSHHHNQLGGNGGILAYKPSPAPSPSVASGGMSDPVFQFGMTDAEGISEMWLTEES 349          
BLAST of EWM27092.1 vs. NCBI_GenBank
Match: gi|302824289|ref|XP_002993789.1| (hypothetical protein SELMODRAFT_137588, partial [Selaginella moellendorffii] >gi|300138385|gb|EFJ05155.1| hypothetical protein SELMODRAFT_137588, partial [Selaginella moellendorffii])

HSP 1 Score: 204.912 bits (520), Expect = 1.391e-59
Identity = 111/219 (50.68%), Postives = 142/219 (64.84%), Query Frame = 0
Query:    3 SSAGKMTSPVSVSKARASPSSRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSVSRHGEGSVHSEDMRQLKQEMEDLKQEERDVKGHIQSMTALLQQ--EGEQNTGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQ 219
            S A  + +PVS        + RYDSSLGLLTKKF++LL+  QA    LDLN+AA TL VQKRRIYDITNVLEGIGLIEKK KN I W+G   +    +          S DM   K E+++L  EERD+   I+ M   L+   E E N   +YVT++D+  LPC+  +T+IAI+AP GTTLEVPDPDE +   +RRYQI L S+ GP+D+YLV+  E+
Sbjct:   39 SPAASVPTPVS--------TCRYDSSLGLLTKKFIDLLK--QAEDGVLDLNKAAETLKVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLGFTTPMDT----------SPDMTAFKSEVDELHVEERDLDESIREMREKLKMLSEDENNKQWLYVTEDDIKSLPCFRNETLIAIKAPHGTTLEVPDPDEAVEYPQRRYQILLRSTMGPIDVYLVSRFEE 237          
BLAST of EWM27092.1 vs. NCBI_GenBank
Match: gi|566033736|gb|ETI56647.1| (hypothetical protein, variant 3 [Phytophthora parasitica P1569])

HSP 1 Score: 203.756 bits (517), Expect = 1.406e-59
Identity = 136/346 (39.31%), Postives = 184/346 (53.18%), Query Frame = 0
Query:    7 KMTSPVSVSK-ARASPSSRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSVSRHGEGSVHSEDMRQLKQEMEDLKQEE----RDVKGHIQSMTALLQQEGEQN---TGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQGEGGEGGGGAGGGQAEASPRGRLDRSPNAGVTGEGGSGRSKPAGHDEPQPASQGSYDLHSLPGAHSLQPHEMMGLSHHHNQLGGNGGILAYKPSPAPSPSVASGGMSDPVFQFGMTDAEGISEMW 344
            K+ SP   ++ ++ SP+SRYDSSLGLLTK+FVEL+Q   ++   LDLN AA +L VQKRRIYDITNVLEGIGLIEK SKNNI W+GA+    +T  S  G        M  L+Q + DL+QEE    + +K   Q++  L ++E           YVT +D+ +   +  Q+V+AI+AP GTTLEVPDPDEGM  G+RR+QI L S++GPVD+YLV   ++ E         GG +EA+   R   +P++            PA      P  Q SYD                           + GI    P             +DP F F + D+EGIS+ +
Sbjct:   46 KLQSPSPSARGSKPSPASRYDSSLGLLTKRFVELIQAAPSK--DLDLNTAAESLGVQKRRIYDITNVLEGIGLIEKTSKNNIHWKGASGPTGATD-SYQG--------MDHLRQSISDLRQEELKYDQQIKMVSQNIRRLYEEEAFDKGSFENFCYVTHDDMRRQESFADQSVMAIKAPPGTTLEVPDPDEGMPAGKRRFQIFLKSTDGPVDVYLVRRMDEKE--------AGGASEATKDARAIETPDS------------PA-----PPLDQRSYD--------------------------SDSGIFKLAPL-----------KTDPDFCFNLDDSEGISDFF 318          
BLAST of EWM27092.1 vs. NCBI_GenBank
Match: gi|675163195|ref|XP_008890482.1| (hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|567971471|gb|ETK96479.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|567999801|gb|ETL49835.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568028970|gb|ETM02904.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568059558|gb|ETM56133.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568109811|gb|ETN24418.1| hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|570337445|gb|ETO85393.1| hypothetical protein, variant 3 [Phytophthora parasitica P1976] >gi|570961506|gb|ETP26485.1| hypothetical protein, variant 3 [Phytophthora parasitica CJ01A1] >gi|570998227|gb|ETP54482.1| hypothetical protein, variant 3 [Phytophthora parasitica P10297])

HSP 1 Score: 203.756 bits (517), Expect = 1.421e-59
Identity = 136/346 (39.31%), Postives = 184/346 (53.18%), Query Frame = 0
Query:    7 KMTSPVSVSK-ARASPSSRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSVSRHGEGSVHSEDMRQLKQEMEDLKQEE----RDVKGHIQSMTALLQQEGEQN---TGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQGEGGEGGGGAGGGQAEASPRGRLDRSPNAGVTGEGGSGRSKPAGHDEPQPASQGSYDLHSLPGAHSLQPHEMMGLSHHHNQLGGNGGILAYKPSPAPSPSVASGGMSDPVFQFGMTDAEGISEMW 344
            K+ SP   ++ ++ SP+SRYDSSLGLLTK+FVEL+Q   ++   LDLN AA +L VQKRRIYDITNVLEGIGLIEK SKNNI W+GA+    +T  S  G        M  L+Q + DL+QEE    + +K   Q++  L ++E           YVT +D+ +   +  Q+V+AI+AP GTTLEVPDPDEGM  G+RR+QI L S++GPVD+YLV   ++ E         GG +EA+   R   +P++            PA      P  Q SYD                           + GI    P             +DP F F + D+EGIS+ +
Sbjct:   46 KLQSPSPSARGSKPSPASRYDSSLGLLTKRFVELIQAAPSK--DLDLNTAAESLGVQKRRIYDITNVLEGIGLIEKTSKNNIHWKGASGPTGATD-SYQG--------MDHLRQSISDLRQEELKYDQQIKMVSQNIRRLYEEEAFDKGSFENFCYVTHDDMRRQESFADQSVMAIKAPPGTTLEVPDPDEGMPAGKRRFQIFLKSTDGPVDVYLVRRMDEKE--------AGGASEATKDARAIETPDS------------PA-----PPLDQRSYD--------------------------SDSGIFKLAPL-----------KTDPDFCFNLDDSEGISDFF 318          
BLAST of EWM27092.1 vs. NCBI_GenBank
Match: gi|302823234|ref|XP_002993271.1| (hypothetical protein SELMODRAFT_136738, partial [Selaginella moellendorffii] >gi|300138941|gb|EFJ05692.1| hypothetical protein SELMODRAFT_136738, partial [Selaginella moellendorffii])

HSP 1 Score: 203.756 bits (517), Expect = 2.882e-59
Identity = 112/219 (51.14%), Postives = 143/219 (65.30%), Query Frame = 0
Query:    3 SSAGKMTSPVSVSKARASPSSRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSVSRHGEGSVHSEDMRQLKQEMEDLKQEERDVKGHIQSMTALLQQ--EGEQNTGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQ 219
            S A  + +PVS        + RYDSSLGLLTKKF++LL+  QA    LDLN+AA TL VQKRRIYDITNVLEGIGLIEKK KN I W+G      +T +         S DM   K E+++L  EERD+   I+ M   L+   E E N   +YVT++D+  LPC+  +T+IAI+AP GTTLEVPDPDE +   +RRYQI L S+ GP+D+YLV+  E+
Sbjct:   39 SPAASVPTPVS--------TCRYDSSLGLLTKKFIDLLK--QAEDGVLDLNKAAETLKVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLG---FTTPMD-------ISPDMTAFKSEVDELHVEERDLDESIREMREKLKMLSEDENNKQWLYVTEDDIKSLPCFRNETLIAIKAPHGTTLEVPDPDEAVEYPQRRYQILLRSTMGPIDVYLVSRFEE 237          
BLAST of EWM27092.1 vs. NCBI_GenBank
Match: gi|675163193|ref|XP_008890481.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|567971470|gb|ETK96478.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567999800|gb|ETL49834.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568028969|gb|ETM02903.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568059557|gb|ETM56132.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568109810|gb|ETN24417.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|570337444|gb|ETO85392.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570961505|gb|ETP26484.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570998226|gb|ETP54481.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297] >gi|970650328|gb|KUF89395.1| Transcription factor E2FA [Phytophthora nicotianae])

HSP 1 Score: 202.216 bits (513), Expect = 5.420e-59
Identity = 137/346 (39.60%), Postives = 183/346 (52.89%), Query Frame = 0
Query:    7 KMTSPVSVSK-ARASPSSRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSVSRHGEGSVHSEDMRQLKQEMEDLKQEE----RDVKGHIQSMTALLQQEGEQN---TGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQGEGGEGGGGAGGGQAEASPRGRLDRSPNAGVTGEGGSGRSKPAGHDEPQPASQGSYDLHSLPGAHSLQPHEMMGLSHHHNQLGGNGGILAYKPSPAPSPSVASGGMSDPVFQFGMTDAEGISEMW 344
            K+ SP   ++ ++ SP+SRYDSSLGLLTK+FVEL+Q   A    LDLN AA +L VQKRRIYDITNVLEGIGLIEK SKNNI W+GA+    +T  S  G        M  L+Q + DL+QEE    + +K   Q++  L ++E           YVT +D+ +   +  Q+V+AI+AP GTTLEVPDPDEGM  G+RR+QI L S++GPVD+YLV   ++ E         GG +EA+   R   +P++            PA    P    Q SYD                           + GI    P             +DP F F + D+EGIS+ +
Sbjct:   46 KLQSPSPSARGSKPSPASRYDSSLGLLTKRFVELIQA--APSKDLDLNTAAESLGVQKRRIYDITNVLEGIGLIEKTSKNNIHWKGASGPTGATD-SYQG--------MDHLRQSISDLRQEELKYDQQIKMVSQNIRRLYEEEAFDKGSFENFCYVTHDDMRRQESFADQSVMAIKAPPGTTLEVPDPDEGMPAGKRRFQIFLKSTDGPVDVYLVRRMDEKE--------AGGASEATKDARAIETPDS------------PA----PPLDQQRSYD--------------------------SDSGIFKLAPL-----------KTDPDFCFNLDDSEGISDFF 319          
BLAST of EWM27092.1 vs. NCBI_GenBank
Match: gi|566033735|gb|ETI56646.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1569])

HSP 1 Score: 202.216 bits (513), Expect = 5.969e-59
Identity = 137/346 (39.60%), Postives = 183/346 (52.89%), Query Frame = 0
Query:    7 KMTSPVSVSK-ARASPSSRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSVSRHGEGSVHSEDMRQLKQEMEDLKQEE----RDVKGHIQSMTALLQQEGEQN---TGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQGEGGEGGGGAGGGQAEASPRGRLDRSPNAGVTGEGGSGRSKPAGHDEPQPASQGSYDLHSLPGAHSLQPHEMMGLSHHHNQLGGNGGILAYKPSPAPSPSVASGGMSDPVFQFGMTDAEGISEMW 344
            K+ SP   ++ ++ SP+SRYDSSLGLLTK+FVEL+Q   A    LDLN AA +L VQKRRIYDITNVLEGIGLIEK SKNNI W+GA+    +T  S  G        M  L+Q + DL+QEE    + +K   Q++  L ++E           YVT +D+ +   +  Q+V+AI+AP GTTLEVPDPDEGM  G+RR+QI L S++GPVD+YLV   ++ E         GG +EA+   R   +P++            PA    P    Q SYD                           + GI    P             +DP F F + D+EGIS+ +
Sbjct:   46 KLQSPSPSARGSKPSPASRYDSSLGLLTKRFVELIQA--APSKDLDLNTAAESLGVQKRRIYDITNVLEGIGLIEKTSKNNIHWKGASGPTGATD-SYQG--------MDHLRQSISDLRQEELKYDQQIKMVSQNIRRLYEEEAFDKGSFENFCYVTHDDMRRQESFADQSVMAIKAPPGTTLEVPDPDEGMPAGKRRFQIFLKSTDGPVDVYLVRRMDEKE--------AGGASEATKDARAIETPDS------------PA----PPLDQQRSYD--------------------------SDSGIFKLAPL-----------KTDPDFCFNLDDSEGISDFF 319          
BLAST of EWM27092.1 vs. NCBI_GenBank
Match: gi|593206982|ref|XP_007132480.1| (hypothetical protein PHAVU_011G097700g [Phaseolus vulgaris] >gi|561005480|gb|ESW04474.1| hypothetical protein PHAVU_011G097700g [Phaseolus vulgaris])

HSP 1 Score: 201.06 bits (510), Expect = 7.231e-58
Identity = 105/199 (52.76%), Postives = 137/199 (68.84%), Query Frame = 0
Query:   23 SRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSVSRHGEGSVHSEDMRQLKQEMEDLKQEERDVKGHIQSMTALLQQ--EGEQNTGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQ 219
             RYDSSLGLLTKKF+ L++  QA    LDLN+AA TL VQKRRIYDITNVLEGIGLIEKK KN I W+G         VSR GE     ++   L+ E+E+L  +ER +   I+ M   L++  E E N  +++VT+ED+  LPC+  +T+IAI+AP GTTLEVPDPDE +   +RRY+I L S+ GP+D+YLV+  E+
Sbjct:  143 CRYDSSLGLLTKKFINLIK--QAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGL-------DVSRPGEAD---DNFASLQAEVENLTMDERRLDEQIREMQERLRELSEDENNERMLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEE 329          
BLAST of EWM27092.1 vs. NCBI_GenBank
Match: gi|675163197|ref|XP_008890483.1| (hypothetical protein, variant 4 [Phytophthora parasitica INRA-310] >gi|567971472|gb|ETK96480.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|567999802|gb|ETL49836.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568028971|gb|ETM02905.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568059559|gb|ETM56134.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568109812|gb|ETN24419.1| hypothetical protein, variant 4 [Phytophthora parasitica INRA-310] >gi|570337446|gb|ETO85394.1| hypothetical protein, variant 4 [Phytophthora parasitica P1976] >gi|570961507|gb|ETP26486.1| hypothetical protein, variant 4 [Phytophthora parasitica CJ01A1] >gi|570998228|gb|ETP54483.1| hypothetical protein, variant 4 [Phytophthora parasitica P10297])

HSP 1 Score: 199.134 bits (505), Expect = 8.356e-58
Identity = 129/295 (43.73%), Postives = 172/295 (58.31%), Query Frame = 0
Query:    7 KMTSPVSVSK-ARASPSSRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSVSRHGEGSVHSEDMRQLKQEMEDLKQEE----RDVKGHIQSMTALLQQEGEQN---TGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQGEGGEGGGGAGGGQAEASPRGRLDRSPNAGVTGEGGSGRSKPAGHDEPQPASQGSYDLHSLPGAHSLQPHEMMG 293
            K+ SP   ++ ++ SP+SRYDSSLGLLTK+FVEL+Q   A    LDLN AA +L VQKRRIYDITNVLEGIGLIEK SKNNI W+GA+    +T  S  G        M  L+Q + DL+QEE    + +K   Q++  L ++E           YVT +D+ +   +  Q+V+AI+AP GTTLEVPDPDEGM  G+RR+QI L S++GPVD+YLV   ++ E         GG +EA+   R   +P++            PA      P  Q SYD  S  G   L P +++ 
Sbjct:   46 KLQSPSPSARGSKPSPASRYDSSLGLLTKRFVELIQA--APSKDLDLNTAAESLGVQKRRIYDITNVLEGIGLIEKTSKNNIHWKGASGPTGATD-SYQG--------MDHLRQSISDLRQEELKYDQQIKMVSQNIRRLYEEEAFDKGSFENFCYVTHDDMRRQESFADQSVMAIKAPPGTTLEVPDPDEGMPAGKRRFQIFLKSTDGPVDVYLVRRMDEKE--------AGGASEATKDARAIETPDS------------PAP-----PLDQRSYDSDS--GIFKLAPLKVLN 302          
BLAST of EWM27092.1 vs. NCBI_GenBank
Match: gi|566033737|gb|ETI56648.1| (hypothetical protein, variant 4 [Phytophthora parasitica P1569])

HSP 1 Score: 199.134 bits (505), Expect = 9.008e-58
Identity = 129/295 (43.73%), Postives = 172/295 (58.31%), Query Frame = 0
Query:    7 KMTSPVSVSK-ARASPSSRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSVSRHGEGSVHSEDMRQLKQEMEDLKQEE----RDVKGHIQSMTALLQQEGEQN---TGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQGEGGEGGGGAGGGQAEASPRGRLDRSPNAGVTGEGGSGRSKPAGHDEPQPASQGSYDLHSLPGAHSLQPHEMMG 293
            K+ SP   ++ ++ SP+SRYDSSLGLLTK+FVEL+Q   A    LDLN AA +L VQKRRIYDITNVLEGIGLIEK SKNNI W+GA+    +T  S  G        M  L+Q + DL+QEE    + +K   Q++  L ++E           YVT +D+ +   +  Q+V+AI+AP GTTLEVPDPDEGM  G+RR+QI L S++GPVD+YLV   ++ E         GG +EA+   R   +P++            PA      P  Q SYD  S  G   L P +++ 
Sbjct:   46 KLQSPSPSARGSKPSPASRYDSSLGLLTKRFVELIQA--APSKDLDLNTAAESLGVQKRRIYDITNVLEGIGLIEKTSKNNIHWKGASGPTGATD-SYQG--------MDHLRQSISDLRQEELKYDQQIKMVSQNIRRLYEEEAFDKGSFENFCYVTHDDMRRQESFADQSVMAIKAPPGTTLEVPDPDEGMPAGKRRFQIFLKSTDGPVDVYLVRRMDEKE--------AGGASEATKDARAIETPDS------------PAP-----PLDQRSYDSDS--GIFKLAPLKVLN 302          
The following BLAST results are available for this feature:
BLAST of EWM27092.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109269|gb|EWM27092.1|0.000e+0100.00transcription factor e2fb [Nannochloropsis gaditan... [more]
gi|302824289|ref|XP_002993789.1|1.391e-5950.68hypothetical protein SELMODRAFT_137588, partial [S... [more]
gi|566033736|gb|ETI56647.1|1.406e-5939.31hypothetical protein, variant 3 [Phytophthora para... [more]
gi|675163195|ref|XP_008890482.1|1.421e-5939.31hypothetical protein, variant 3 [Phytophthora para... [more]
gi|302823234|ref|XP_002993271.1|2.882e-5951.14hypothetical protein SELMODRAFT_136738, partial [S... [more]
gi|675163193|ref|XP_008890481.1|5.420e-5939.60hypothetical protein, variant 2 [Phytophthora para... [more]
gi|566033735|gb|ETI56646.1|5.969e-5939.60hypothetical protein, variant 2 [Phytophthora para... [more]
gi|593206982|ref|XP_007132480.1|7.231e-5852.76hypothetical protein PHAVU_011G097700g [Phaseolus ... [more]
gi|675163197|ref|XP_008890483.1|8.356e-5843.73hypothetical protein, variant 4 [Phytophthora para... [more]
gi|566033737|gb|ETI56648.1|9.008e-5843.73hypothetical protein, variant 4 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3567rna3567Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications