rna3565, rna3565 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3565
Unique Name	rna3565
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2568
Alignment location	CM002461.1:715091..716116 -

Link to JBrowse

Properties


Property Name	Value
Product	phytanoyl- dioxygenase family protein
Orig transcript id	gnl\|cribi\|Naga_100046g8.5148.mrna
Orig protein id	gnl\|cribi\|Naga_100046g8.5148
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:715091..716116 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100046g8	gene3434	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3565	rna3565-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27109.1	cds3556	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:715091..716116-
coding sequence from alignment at CM002461.1:715091..716116-

mRNA sequence

>rna3565 ID=rna3565|Name=rna3565|organism=Nannochloropsis gaditana|type=mRNA|length=2568bp
CTTGTATGGAAATCATCGCGTTTTACGCCCATCGAATATGATCATACGTA
TTAAATACATCAATACTCTATAGGTGCAGGCTTGGGGGTCGCTTGGAGGG
CGTGCTGGTCCGATTTTAGGCTGGTATTTGAGCACGGACAGAGCCTGGCC
AAAGGACGCTTCAACTCCCCTCCTCAAAGCACCAGGTCCCTTAACTTCCC
GAGAGTGTCCGGGTCATCAGCCAATTGGGGGTCATGCAGCTCCGATGCAT
TGCCTGGGTCCTTGTGGGGGCCTCAGTGGTTGCAAGCGACGGTATGTTGC
TGGCGGCATCCGATGGCCCCCCCACGATGCCCACCCTGACGGGAAGCGGA
GTCATGTCAAGCCTGGTCGCTGCCGCCGCGGCCTCTGGAGGAAAGGGCCA
ACGGAAGGCATCGGCTCTGTTCTCGTCTGAATGGTCATCCTTTAAGTGGC
GAAGAAAATCTTCGCAAGCCAAAAGCAGGACGCCATGGTTCATTCCACCG
GAGTTGATGTGTGTGCCGCGGGAGAAGGACCGGGAGGGCGTAGAGGCGGA
AAAAAGGGGGATCGATGCTCATGCTGCAACAGCCTTATCGCGAGAGGATG
CAGACGAAGGTCTTGAAAAGGCCACGACCACGTCTCTGCTTGAAGAGGAA
GTAGACACCGCAACGCCCGCAGGCGTCGTCAGCCGCACGGAGGCCAGCAT
CTTGGAAGTCAGCAGCTCGGAGATCCACAGTCACGAGGACAGAGACGTGA
AGAAAAATATGACAACGACACTTGCTGGAGTGAAGTCCATCGTGGAGGGG
GAAGAAGCCGACGAACGGGAGGAGGAGAAATTGAGAGAGGACGCGGAGCC
CCCTTCCCCGCCTCGCCTGCGACCCGTTTCGAAGCCCAGCGCCAAGCGAG
CGCCGATCCTCCGTAAGAGAAGGGAGGACGACGAGTTGTCGATTCCTTGC
GGTCGGTCCCTTTCCTCGGCATTGAGCGTGATTGGGGGCGGATTGCCCTT
ACGTCGCGGAGGCAGCGACACCGTCTGTGCGACTGGGGGAGAGCGGGCCG
CGAGCAGTGTTCACTCGCCGTCTACCACGACAACCCGCGGCATCCACTCC
GCAGGGGAGGTGGAGATCGATGCTTGGGAGGAGAGGATCGAGGAAGGCGA
GGGGGCCCTCTCGGTGACGCGCTCGACCTGGCATTATGAGGCCGTGGTGA
TTGAGGCTGGGGCGTCGGACGGGAGGGTGGAGGCGGAGGGGCACCTCGAG
GTCTCGCAGGGCCCTCGACTCGGGATCCTGGACGACGGGCTAGAAGAGGA
GGAGGGAGAAACGGAGCTGGCTGCGCGTTTGAGGGCAGAAACGGCCCAAC
GAGTGGGAGGCTTGTCCGTGGAGAAGAGGGCGGCCTTGGAACGAGTCCGC
ATTGCTCTGTACGGTCCCGACGTGGATCCGCGCCGAGTGGCCGCGGTGGA
CCAATTGGTGGTTTGCGGAGACCGGGACGCGATGATCCTTTCTTTCCTGG
CTCGGAAGGATTTCGACGCGGACACGGCCCTGCGATCCTTCGACAGGGTC
ATCCGGTGGCGGATGGCGCAAGACATCGAGGAAGTGTTTGAGGGAGAGCG
ACTGGCGCGACGCAAGGTGGAGAAGCACCGAGCCTGCTGGCCGACCGCCT
TCTATTTCAGTCAAGACCATGCGGGCGATCCGATCTTTGTGGACCGGATG
GGCCTTCTGGAGTTGGCGCGCTTGCGGACCGGCCCCGAGGCCCTGGGCTT
GACGGACATGATCACGTACTACATCCAGACCATGGAGGGCCGCCGACGCC
TCCTCTTCCCACACCTGTCTCGGCGCAGCGGACGCCTCATTAGTCAGTAC
GTGAGCGTGGTGGATGTCAAGCATTTTGGCCCACAGCATTTCGGGAGACA
CGCGCTTCAATTCATGCGCTCTCTGGGCGACGTGCACGACGAGAACTACT
CAGACCTGGTCAAGTCCCTTTACATCATCAACGCCCCCTTCTTCTTCCAC
AAGGTTTTCCACCTCATCTCTTGCATGATGTCGCAGGAGCTCAAGGACCG
TCTGAAAGTCTTGAACAAGAGAGAATCCTTGCGTGAGCTATCCCAGATCC
TGCCGCCGGATCTTGCCCGACGCATAGTGGAGGGAGACCCGGCCGGGGAG
AGGGAGGGCGAGAGGGAGCTGCATGCTTTCTTGGACAGGGCGGCCAGGGC
AGGACTCCACCGGCGGCGATGGGTGTAGATTCGAGTGTCGGTCCCGGTGT
GGGCGGCGATGGACACGGTGGTAATGGAACGCTTGAAGCGCAGGGGGAGG
AAAAGCAGAGGATACTGCATACTGAAGGCTGTCAAATAGAATCTAAGCGA
GGCATCATAAATCTAAAGCGACCTTTGTGAGTTGAAAGTAGAGGCTCACT
GCCAAGTGTGGAATATAAGAAAGCTGGTCGTAGGCGTGGATCAAGCCCTG
CCGAGCGTGCTTCATTAAGCGGCCAAAGGGTCGGAGCGCACCGACATGAT
GAAATGTCAGGCAACAGTCTAAAATACGTCTAATGAATGAACATCCACAC
GCACAACATGCAGCCCCC

protein sequence of rna3565

>rna3565-protein ID=rna3565-protein|Name=rna3565|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MRMRKPLLTILPDSRCNFPLTIITLHSLTPYLTPTAYLTLYEEAFGPASD
VSNLTDKRFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKR
PASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYH
GEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFR
CVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHF
DLQPLPSEAWDRGGLALHAREMEAMRVNYMESRRKETG

mRNA from alignment at CM002461.1:715091..716116-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3565 ID=rna3565|Name=rna3565|organism=Nannochloropsis gaditana|type=mRNA|length=1026bp|location=Sequence derived from alignment at CM002461.1:715091..716116- (Nannochloropsis gaditana)
ATGCGAATGAGAAAACCACTGTTGACGATTCTTCCGGACTCACGTTGTAA
TTTTCCGTTGACGATCATAACACTACACTCCTTAAGTACGTTGATTGCGA
CAATAGCGTTGTGGCTTGACGTTGTCGACCTGGAGGAGGTACTAATCGTA
ATGTCACCTACTCACTTGCAACAGCACCATACCTTACTCGTCATGAAAGG
TGGCATGGATCCAGAGAAAGGCTTTGTCGGACCATTCCGTGCTTTCGATG
CTGCTCAAGCGACGGCCTACCTGACTTTGTATGAAGAAGCCTTCGGTCCG
GCGTCTGATGTATCCAATCTTACCGACAAGCGCTTTCAGTCGCACCTGTA
TTTGCCTTTTGTCGTAGCCATCATGTCCACAGAGGCCATCCTGAAGCAAG
TGCGGGCCGTCCTGGGGCCTGACCTCCTTGTTTGGTTTACTGAGTGGCAT
GTCAAGCGACCGGCGTCTTCGAGTAAATATACCCCGCATCAAGACAGCAC
GTACGCCGGTCTAGTACCGGCAGAAGACGTTGTCACGGTCTGGGTGGCCC
TGACTGAGGCGACCAGGACGAACGGGTGTCTTGAATTTGTGCCCATGACC
GAGTATCACGGGGAGCAACTTCCCCACGTGGAGGAACCCGGCGACTCCAC
CAATCTGCTGCTTCGAGGCCAGCGCATTGCCTCCGAACATCTTGACTTTA
CCGCCAAGGCCGTGCCCGTAGAGCTTTGTCCGGGAGAGGCGACCATTCAC
GCCTTTCGTTGTGTTCATGCGTCGGGTCCCAACCGCTCGGACGCGTCGCC
GCGGGTGGGCCTCGCGATCCGCTACATGAAGCCCAGTGTCAGACAGATGC
AGGGAGGACGGCGGGAGGGGGCTATGCTGGTGAGCGGGCAAGACGACTTC
GGGCATTTTGACCTCCAGCCACTGCCCTCCGAGGCCTGGGACAGGGGAGG
ATTGGCCTTGCATGCCCGGGAGATGGAAGCCATGCGTGTGAATTACATGG
AGAGTCGGCGAAAAGAAACAGGATGA

Coding sequence (CDS) from alignment at CM002461.1:715091..716116-

>rna3565 ID=rna3565|Name=rna3565|organism=Nannochloropsis gaditana|type=CDS|length=2601bp|location=Sequence derived from alignment at CM002461.1:715091..716116- (Nannochloropsis gaditana)
CGACGGCCTACCTGACTTTGTATGAAGAAGCCTTCGGTCCGGCGTCTGAT
GTATCCAATCTTACCGACAAGCGCTTTCAGTCGCACCTGTATTTGCCTTT
TGTCGTAGCCATCATGTCCACAGAGGCCATCCTGAAGCAAGTGCGGGCCG
TCCTGGGGCCTGACCTCCTTGTTTGGTTTACTGAGTGGCATGTCAAGCGA
CCGGCGTCTTCGAGTAAATATACCCCGCATCAAGACAGCACGTACGCCGG
TCTAGTACCGGCAGAAGACGTTGTCACGGTCTGGGTGGCCCTGACTGAGG
CGACCAGGACGAACGGGTGTCTTGAATTTGTGCCCATGACCGAGTATCAC
GGGGAGCAACTTCCCCACGTGGAGGAACCCGGCGACTCCACCAATCTGCT
GCTTCGAGGCCAGCGCATTGCCTCCGAACATCTTGACTTTACCGCCAAGG
CCGTGCCCGTAGAGCTTTGTCCGGGAGAGGCGACCATTCACGCCTTTCGT
TGTGTTCATGCGTCGGGTCCCAACCGCTCGGACGCGTCGCCGCGGGTGGG
CCTCGCGATCCGCTACATGAAGCCCAGTGTCAGACAGATGCAGGGAGGAC
GGCGGGAGGGGGCTATGCTGGTGAGCGGGCAAGACGACTTCGGGCATTTT
GACCTCCAGCCACTGCCCTCCGAGGCCTGGGACAGGGGAGGATTGGCCTT
GCATGCCCGGGAGATGGAAGCCATGCGTGTGAATTACATGGAGAGTCGGC
GAAAAGAAACAGGATGACACCATACCTTACTCATGCGAATGAGAAAACCA
CTGTTGACGATTCTTCCGGACTCACGTTGTAATTTTCCGTTGACGATCAT
AACACTACACTCCTTAACGACGGCCTACCTGACTTTGTATGAAGAAGCCT
TCGGTCCGGCGTCTGATGTATCCAATCTTACCGACAAGCGCTTTCAGTCG
CACCTGTATTTGCCTTTTGTCGTAGCCATCATGTCCACAGAGGCCATCCT
GAAGCAAGTGCGGGCCGTCCTGGGGCCTGACCTCCTTGTTTGGTTTACTG
AGTGGCATGTCAAGCGACCGGCGTCTTCGAGTAAATATACCCCGCATCAA
GACAGCACGTACGCCGGTCTAGTACCGGCAGAAGACGTTGTCACGGTCTG
GGTGGCCCTGACTGAGGCGACCAGGACGAACGGGTGTCTTGAATTTGTGC
CCATGACCGAGTATCACGGGGAGCAACTTCCCCACGTGGAGGAACCCGGC
GACTCCACCAATCTGCTGCTTCGAGGCCAGCGCATTGCCTCCGAACATCT
TGACTTTACCGCCAAGGCCGTGCCCGTAGAGCTTTGTCCGGGAGAGGCGA
CCATTCACGCCTTTCGTTGTGTTCATGCGTCGGGTCCCAACCGCTCGGAC
GCGTCGCCGCGGGTGGGCCTCGCGATCCGCTACATGAAGCCCAGTGTCAG
ACAGATGCAGGGAGGACGGCGGGAGGGGGCTATGCTGGTGAGCGGGCAAG
ACGACTTCGGGCATTTTGACCTCCAGCCACTGCCCTCCGAGGCCTGGGAC
AGGGGAGGATTGGCCTTGCATGCCCGGGAGATGGAAGCCATGCGTGTGAA
TTACATGGAGAGTCGGCGAAAAGAAACAGGATGACACCATACCTTACTCA
TGCGAATGAGAAAACCACTGTTGACGATTCTTCCGGACTCACGTTGTAAT
TTTCCGTTGACGATCATAACACTACACTCCTTAACGACGGCCTACCTGAC
TTTGTATGAAGAAGCCTTCGGTCCGGCGTCTGATGTATCCAATCTTACCG
ACAAGCGCTTTCAGTCGCACCTGTATTTGCCTTTTGTCGTAGCCATCATG
TCCACAGAGGCCATCCTGAAGCAAGTGCGGGCCGTCCTGGGGCCTGACCT
CCTTGTTTGGTTTACTGAGTGGCATGTCAAGCGACCGGCGTCTTCGAGTA
AATATACCCCGCATCAAGACAGCACGTACGCCGGTCTAGTACCGGCAGAA
GACGTTGTCACGGTCTGGGTGGCCCTGACTGAGGCGACCAGGACGAACGG
GTGTCTTGAATTTGTGCCCATGACCGAGTATCACGGGGAGCAACTTCCCC
ACGTGGAGGAACCCGGCGACTCCACCAATCTGCTGCTTCGAGGCCAGCGC
ATTGCCTCCGAACATCTTGACTTTACCGCCAAGGCCGTGCCCGTAGAGCT
TTGTCCGGGAGAGGCGACCATTCACGCCTTTCGTTGTGTTCATGCGTCGG
GTCCCAACCGCTCGGACGCGTCGCCGCGGGTGGGCCTCGCGATCCGCTAC
ATGAAGCCCAGTGTCAGACAGATGCAGGGAGGACGGCGGGAGGGGGCTAT
GCTGGTGAGCGGGCAAGACGACTTCGGGCATTTTGACCTCCAGCCACTGC
CCTCCGAGGCCTGGGACAGGGGAGGATTGGCCTTGCATGCCCGGGAGATG
GAAGCCATGCGTGTGAATTACATGGAGAGTCGGCGAAAAGAAACAGGATG
ACACCATACCTTACTCATGCGAATGAGAAAACCACTGTTGACGATTCTTC
CGGACTCACGTTGTAATTTTCCGTTGACGATCATAACACTACACTCCTTA
A

Synonyms

Publications