EWM27109.1, cds3556 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|585109286|gb|EWM27109.1| (phytanoyl- dioxygenase family protein [Nannochloropsis gaditana]) HSP 1 Score: 599.742 bits (1545), Expect = 0.000e+0 Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0
Query: 1 MRMRKPLLTILPDSRCNFPLTIITLHSLTPYLTPTAYLTLYEEAFGPASDVSNLTDKRFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREMEAMRVNYMESRRKETG 288
MRMRKPLLTILPDSRCNFPLTIITLHSLTPYLTPTAYLTLYEEAFGPASDVSNLTDKRFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREMEAMRVNYMESRRKETG
Sbjct: 1 MRMRKPLLTILPDSRCNFPLTIITLHSLTPYLTPTAYLTLYEEAFGPASDVSNLTDKRFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREMEAMRVNYMESRRKETG 288
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|873242473|emb|CEL91712.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 163.31 bits (412), Expect = 2.762e-45 Identity = 94/230 (40.87%), Postives = 133/230 (57.83%), Query Frame = 0
Query: 56 DKRFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVR-QMQGGRREGAMLVSG--QDDFGHFDLQPLPSEAWDRGGLALHAREMEAMRVNYMES 282
D RF+ HL LP++ ++ +L V AVLGPD+L W +E+++K P + S ++ HQDSTYAGL P++DV+T W+AL + NGC++++P T H +QLPHV E D N+L RGQ I + + + AV V L GE ++H FR VH SGPN++D R+G IR++ V Q RE L G + G+FDL P E +A H M NY +S
Sbjct: 47 DMRFRPHLLLPWLWDLVMKPEVLDAVEAVLGPDVLAWSSEFNIKEPHTDSFFSWHQDSTYAGLEPSDDVLTAWIALVDVNEANGCMQYIPGT--HHKQLPHV-ETNDHNNMLSRGQTIPN--VVDESSAVNVVLKAGEMSLHHFRLVHRSGPNKTD-DRRIGYTIRFISKRVALTTQRKVRESITLCRGVYAPEEGNFDLDVRPDELMGEAEVARHREAMARENANYFDS 270
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|764613735|ref|WP_044430855.1| (phytanoyl-CoA dioxygenase [Skermanella aerolata] >gi|763833820|gb|KJB94428.1| hypothetical protein N826_11690 [Skermanella aerolata KACC 11604]) HSP 1 Score: 159.458 bits (402), Expect = 1.251e-43 Identity = 100/256 (39.06%), Postives = 148/256 (57.81%), Query Frame = 0
Query: 18 FPLTIITLHSLTPYLTPTAYLTLYEEAFGPASDVSNLTDKRFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREME 273
FP+ + + ++ Y T L E +S T+++ H+ LP++ ++ IL V A LGP++L W + + K+P + + HQDSTY GL A D+VT WVA T +T +GC+ VP + +H +QLPH + + TNLL RGQ +A E +D +AV V L PGE +IH R +H S PNRS+ PR+G AIRY+ +RQ G R+ A LV G+D+FG+FD +P+P +D +A H +E
Sbjct: 20 FPIPVFSEEEISGYRTRLEDLARQE-----GGKLSRATNQK--PHILLPWLNRLIRDPRILGPVSAALGPNILCWGSGFFWKQPKDPAFISWHQDSTYWGLS-APDIVTAWVAFTPSTVESGCMRVVPCS-HHKDQLPHKDTFAE-TNLLSRGQEVAVE-VD-EREAVDVVLKPGEMSIHHVRLIHGSEPNRSE-QPRIGFAIRYIPTYIRQT-AGVRDSATLVWGEDEFGNFDAEPVPETDFDPRAVAFHTAMLE 261
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|505312433|ref|WP_015499535.1| (putative phytanoyl-CoA dioxygenase family protein [Octadecabacter antarcticus] >gi|476509496|gb|AGI67507.1| putative phytanoyl-CoA dioxygenase family protein [Octadecabacter antarcticus 307]) HSP 1 Score: 154.836 bits (390), Expect = 3.731e-42 Identity = 83/209 (39.71%), Postives = 127/209 (60.77%), Query Frame = 0
Query: 58 RFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLA 266
RF++HL P + I + +L A+LGPD+L+W +++ VK S+ + HQDST+AGL P +D+V +W+ALT + +GCL + T G QL H + D+ N+L GQ + D + +V + L GEA++H+ R VH S PNRSD PR+G+ +R++ PSVRQ + R+ A LV+G D F HFD +P+P+ + +A
Sbjct: 55 RFKAHLLSPDLARIATHPRVLAVATAILGPDVLLWSSDFFVKPGGSTGYVSWHQDSTHAGLDPTDDIVNLWLALTPSKSASGCLRVIAGTHDAG-QLTHTNKE-DADNMLFFGQTV-----DVESDSVALPLEAGEASLHSMRIVHGSEPNRSDG-PRIGMVLRFIHPSVRQTKA--RDSATLVAGVDAFNHFDHEPIPTSHFASDAIA 253
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|1085834292|emb|SDT54876.1| (chlorinating enzyme [Bradyrhizobium canariense]) HSP 1 Score: 151.754 bits (382), Expect = 9.161e-41 Identity = 91/223 (40.81%), Postives = 134/223 (60.09%), Query Frame = 0
Query: 58 RFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREME-AMRVNY 279
R + HL ++ ++ E I+ + + G +LL W + + +K PA S+ + HQDSTY GL + DVVT WVAL+E+ + NG LE VP T +Q+PH + N+L RGQ +A E +D + AV +EL PGE ++H R +H S PN S R+GLAIRYM SVRQ++G +GA LV G D F F+ +P+P+ D + LH ++ E A+++ Y
Sbjct: 53 RGKPHLLFTWLNDLIREERIIDAIEDLYGENLLCWSSSFFIKEPADSAFVSWHQDSTYWGL-SSPDVVTAWVALSESNKANGALEVVPGTHLK-DQIPH-RDTFSKNNMLTRGQEVAVE-VDPNS-AVMLELEPGEMSLHHVRLIHGSAPNPSRTQRRIGLAIRYMPTSVRQLEG--EDGASLVRGVDTFRTFEHEPIPARDMDPEFVELHRKQHERAVKILY 268
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|653048924|ref|WP_027300518.1| (phytanoyl-CoA dioxygenase [Rhodospirillales bacterium URHD0088]) HSP 1 Score: 149.828 bits (377), Expect = 5.150e-40 Identity = 90/219 (41.10%), Postives = 128/219 (58.45%), Query Frame = 0
Query: 56 DKRFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTA-KAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREME 273
D R +SHL ++ ++ + IL + + GPDLL W T + +K A+ + + HQDSTY GL DVV+ W+A T A NG ++ +P T + +Q+PH + D NLL RGQ +A +D A KAV + L PGE ++H R VH S PN S+ R+G AIRY+ SV Q++G + A LV G D FGHF+++P PS D +ALH + E
Sbjct: 51 DLRHKSHLLFTWLAELVRHDRILDAIEDLYGPDLLCWSTNFFIKEKANPAFVSWHQDSTYWGL-SRPDVVSAWIAFTPANSANGAMQVIPGT-HKTDQIPH-RDTFDKHNLLTRGQEVA---VDVDAGKAVTITLEPGEMSLHHVRLVHGSPPNTSN-DRRIGFAIRYVPTSVSQIEGA--DSATLVRGTDRFGHFEIEPRPSYDLDPALVALHKQITE 260
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|1200319409|gb|OUU40344.1| (hypothetical protein CBC11_03400 [Proteobacteria bacterium TMED51]) HSP 1 Score: 148.288 bits (373), Expect = 2.791e-39 Identity = 93/227 (40.97%), Postives = 132/227 (58.15%), Query Frame = 0
Query: 58 RFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREMEAM-RVNYMESR 283
R HL+LPF+ ++ AIL V ++LG DLLVW T + K P S+ HQD Y GL A D VTVWVAL++A+ +GC+ FVP + H ++ PH + P +L RGQ + E +D ++AV L PG+ ++H HAS PNR+D R+G AIRY+KPS+RQ GG R A LV G+D + +F+L P P +AL R + ++NY + +
Sbjct: 62 RTSCHLFLPFLDGLIRHPAILGSVASILGEDLLVWGTSFFTKEPRSADYVAWHQDLHYWGL-DARDEVTVWVALSQASVESGCMRFVPAS--HIKEAPHADRPAKGA-MLSRGQELI-EAVD-DSQAVNAPLLPGQMSLHHGLTFHASMPNRAD-DRRIGFAIRYIKPSMRQA-GGERGVATLVQGEDRYQNFELAPRPQSVAAPEDIALWQRAVSIQNQINYRDMK 280
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|1200316318|gb|OUU37386.1| (hypothetical protein CBC11_09205 [Proteobacteria bacterium TMED51]) HSP 1 Score: 148.288 bits (373), Expect = 2.882e-39 Identity = 93/227 (40.97%), Postives = 132/227 (58.15%), Query Frame = 0
Query: 58 RFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREMEAM-RVNYMESR 283
R HL+LPF+ ++ AIL V ++LG DLLVW T + K P S+ HQD Y GL A D VTVWVAL++A+ +GC+ FVP + H ++ PH + P +L RGQ + E +D ++AV L PG+ ++H HAS PNR+D R+G AIRY+KPS+RQ GG R A LV G+D + +F+L P P +AL R + ++NY + +
Sbjct: 62 RTSCHLFLPFLDGLIRHPAILGSVASILGEDLLVWGTSFFTKEPRSADYVAWHQDLHYWGL-DARDEVTVWVALSQASVESGCMRFVPAS--HIKEAPHADRPAKGA-MLSRGQELI-EAVD-DSQAVNAPLLPGQMSLHHGLTFHASMPNRAD-DRRIGFAIRYIKPSMRQA-GGERGVATLVQGEDRYQNFELAPRPQSVAAPEDIALWQRAVSIQNQINYRDMK 280
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|653540884|ref|WP_027577297.1| (phytanoyl-CoA dioxygenase family protein [Bradyrhizobium sp. WSM1743]) HSP 1 Score: 147.132 bits (370), Expect = 6.928e-39 Identity = 88/216 (40.74%), Postives = 122/216 (56.48%), Query Frame = 0
Query: 58 RFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREME 273
R HL ++ ++ E I+ + + G +LL W ++ +K P S + HQDSTY GL + DVVT WVALTE+T+ NG LE +P T +Q+PH + N+L RGQ IA E +D +V +EL PGE ++H R VH S PNRS+ R+G AIRY+ VRQ++G + A LV G D FG F +P P+ D L+ R E
Sbjct: 57 RANGHLLFTWLNELIRDERIVDAIEDLYGENLLCWMSDLFIKEPNDPSYVSWHQDSTYWGL-SSPDVVTAWVALTESTKANGALEVIPGTHLK-DQIPH-RDTFAKDNMLSRGQEIAVE-VD-PGSSVMLELEPGEMSLHHVRLVHGSAPNRSETQRRIGFAIRYIPTHVRQLEG--EDTATLVRGVDTFGSFQHEPTPAYDMDPECLSFRQRSAE 265
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|1123578484|ref|WP_074278802.1| (phytanoyl-CoA dioxygenase [Bradyrhizobium erythrophlei] >gi|1119067193|emb|SIO61459.1| chlorinating enzyme [Bradyrhizobium erythrophlei]) HSP 1 Score: 146.747 bits (369), Expect = 8.256e-39 Identity = 90/223 (40.36%), Postives = 131/223 (58.74%), Query Frame = 0
Query: 58 RFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALH-AREMEAMRVNY 279
R +SH+ ++ ++ IL V +LGPD+L W T + +K P + HQD+TY GL + DV T W+A++ A + +GC++FV T H +Q+ H E+ D NLL RGQ IA E +D +KAV EL PG+A++H H S PNRSD R+GLA+RY+ ++Q GRR+ A LV G+D + HF+ + +P + LA H A E +RV Y
Sbjct: 53 RHRSHVLFTWINDMIRHPKILDAVEDLLGPDILCWNTSFFIKEPHDPGFVSWHQDATYWGL-DSSDVATAWIAMSPANKVSGCMKFVAGT--HKQQVQH-EDTFDQNNLLTRGQEIAVE-VD-ESKAVFAELKPGQASLHHVLLFHGSEPNRSD-DRRIGLAVRYIPTRLKQAV-GRRDWATLVRGKDTYHHFESEYVPKRDLEPEALAFHKAVTEEQLRVLY 267 The following BLAST results are available for this feature:
BLAST of EWM27109.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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