EWM27109.1, cds3556 (CDS) Nannochloropsis gaditana

Overview
NameEWM27109.1
Unique Namecds3556
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:716032..716116 -
Alignment locationCM002461.1:715928..715942 -
Alignment locationCM002461.1:715091..715857 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27109.1
Productphytanoyl- dioxygenase family protein
Orig transcript idgnl|cribi|Naga_100046g8.5148.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:716032..716116 -
CM002461.1supercontigCM002461.1:715928..715942 -
CM002461.1supercontigCM002461.1:715091..715857 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR008775Phytyl_CoA_dOase
Homology
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|585109286|gb|EWM27109.1| (phytanoyl- dioxygenase family protein [Nannochloropsis gaditana])

HSP 1 Score: 599.742 bits (1545), Expect = 0.000e+0
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0
Query:    1 MRMRKPLLTILPDSRCNFPLTIITLHSLTPYLTPTAYLTLYEEAFGPASDVSNLTDKRFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREMEAMRVNYMESRRKETG 288
            MRMRKPLLTILPDSRCNFPLTIITLHSLTPYLTPTAYLTLYEEAFGPASDVSNLTDKRFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREMEAMRVNYMESRRKETG
Sbjct:    1 MRMRKPLLTILPDSRCNFPLTIITLHSLTPYLTPTAYLTLYEEAFGPASDVSNLTDKRFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREMEAMRVNYMESRRKETG 288          
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|873242473|emb|CEL91712.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 163.31 bits (412), Expect = 2.762e-45
Identity = 94/230 (40.87%), Postives = 133/230 (57.83%), Query Frame = 0
Query:   56 DKRFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVR-QMQGGRREGAMLVSG--QDDFGHFDLQPLPSEAWDRGGLALHAREMEAMRVNYMES 282
            D RF+ HL LP++  ++    +L  V AVLGPD+L W +E+++K P + S ++ HQDSTYAGL P++DV+T W+AL +    NGC++++P T  H +QLPHV E  D  N+L RGQ I +  +   + AV V L  GE ++H FR VH SGPN++D   R+G  IR++   V    Q   RE   L  G    + G+FDL   P E      +A H   M     NY +S
Sbjct:   47 DMRFRPHLLLPWLWDLVMKPEVLDAVEAVLGPDVLAWSSEFNIKEPHTDSFFSWHQDSTYAGLEPSDDVLTAWIALVDVNEANGCMQYIPGT--HHKQLPHV-ETNDHNNMLSRGQTIPN--VVDESSAVNVVLKAGEMSLHHFRLVHRSGPNKTD-DRRIGYTIRFISKRVALTTQRKVRESITLCRGVYAPEEGNFDLDVRPDELMGEAEVARHREAMARENANYFDS 270          
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|764613735|ref|WP_044430855.1| (phytanoyl-CoA dioxygenase [Skermanella aerolata] >gi|763833820|gb|KJB94428.1| hypothetical protein N826_11690 [Skermanella aerolata KACC 11604])

HSP 1 Score: 159.458 bits (402), Expect = 1.251e-43
Identity = 100/256 (39.06%), Postives = 148/256 (57.81%), Query Frame = 0
Query:   18 FPLTIITLHSLTPYLTPTAYLTLYEEAFGPASDVSNLTDKRFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREME 273
            FP+ + +   ++ Y T    L   E        +S  T+++   H+ LP++  ++    IL  V A LGP++L W + +  K+P   +  + HQDSTY GL  A D+VT WVA T +T  +GC+  VP + +H +QLPH +   + TNLL RGQ +A E +D   +AV V L PGE +IH  R +H S PNRS+  PR+G AIRY+   +RQ   G R+ A LV G+D+FG+FD +P+P   +D   +A H   +E
Sbjct:   20 FPIPVFSEEEISGYRTRLEDLARQE-----GGKLSRATNQK--PHILLPWLNRLIRDPRILGPVSAALGPNILCWGSGFFWKQPKDPAFISWHQDSTYWGLS-APDIVTAWVAFTPSTVESGCMRVVPCS-HHKDQLPHKDTFAE-TNLLSRGQEVAVE-VD-EREAVDVVLKPGEMSIHHVRLIHGSEPNRSE-QPRIGFAIRYIPTYIRQT-AGVRDSATLVWGEDEFGNFDAEPVPETDFDPRAVAFHTAMLE 261          
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|505312433|ref|WP_015499535.1| (putative phytanoyl-CoA dioxygenase family protein [Octadecabacter antarcticus] >gi|476509496|gb|AGI67507.1| putative phytanoyl-CoA dioxygenase family protein [Octadecabacter antarcticus 307])

HSP 1 Score: 154.836 bits (390), Expect = 3.731e-42
Identity = 83/209 (39.71%), Postives = 127/209 (60.77%), Query Frame = 0
Query:   58 RFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLA 266
            RF++HL  P +  I +   +L    A+LGPD+L+W +++ VK   S+   + HQDST+AGL P +D+V +W+ALT +   +GCL  +  T   G QL H  +  D+ N+L  GQ +     D  + +V + L  GEA++H+ R VH S PNRSD  PR+G+ +R++ PSVRQ +   R+ A LV+G D F HFD +P+P+  +    +A
Sbjct:   55 RFKAHLLSPDLARIATHPRVLAVATAILGPDVLLWSSDFFVKPGGSTGYVSWHQDSTHAGLDPTDDIVNLWLALTPSKSASGCLRVIAGTHDAG-QLTHTNKE-DADNMLFFGQTV-----DVESDSVALPLEAGEASLHSMRIVHGSEPNRSDG-PRIGMVLRFIHPSVRQTKA--RDSATLVAGVDAFNHFDHEPIPTSHFASDAIA 253          
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|1085834292|emb|SDT54876.1| (chlorinating enzyme [Bradyrhizobium canariense])

HSP 1 Score: 151.754 bits (382), Expect = 9.161e-41
Identity = 91/223 (40.81%), Postives = 134/223 (60.09%), Query Frame = 0
Query:   58 RFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREME-AMRVNY 279
            R + HL   ++  ++  E I+  +  + G +LL W + + +K PA S+  + HQDSTY GL  + DVVT WVAL+E+ + NG LE VP T    +Q+PH  +     N+L RGQ +A E +D  + AV +EL PGE ++H  R +H S PN S    R+GLAIRYM  SVRQ++G   +GA LV G D F  F+ +P+P+   D   + LH ++ E A+++ Y
Sbjct:   53 RGKPHLLFTWLNDLIREERIIDAIEDLYGENLLCWSSSFFIKEPADSAFVSWHQDSTYWGL-SSPDVVTAWVALSESNKANGALEVVPGTHLK-DQIPH-RDTFSKNNMLTRGQEVAVE-VDPNS-AVMLELEPGEMSLHHVRLIHGSAPNPSRTQRRIGLAIRYMPTSVRQLEG--EDGASLVRGVDTFRTFEHEPIPARDMDPEFVELHRKQHERAVKILY 268          
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|653048924|ref|WP_027300518.1| (phytanoyl-CoA dioxygenase [Rhodospirillales bacterium URHD0088])

HSP 1 Score: 149.828 bits (377), Expect = 5.150e-40
Identity = 90/219 (41.10%), Postives = 128/219 (58.45%), Query Frame = 0
Query:   56 DKRFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTA-KAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREME 273
            D R +SHL   ++  ++  + IL  +  + GPDLL W T + +K  A+ +  + HQDSTY GL    DVV+ W+A T A   NG ++ +P T +  +Q+PH  +  D  NLL RGQ +A   +D  A KAV + L PGE ++H  R VH S PN S+   R+G AIRY+  SV Q++G   + A LV G D FGHF+++P PS   D   +ALH +  E
Sbjct:   51 DLRHKSHLLFTWLAELVRHDRILDAIEDLYGPDLLCWSTNFFIKEKANPAFVSWHQDSTYWGL-SRPDVVSAWIAFTPANSANGAMQVIPGT-HKTDQIPH-RDTFDKHNLLTRGQEVA---VDVDAGKAVTITLEPGEMSLHHVRLVHGSPPNTSN-DRRIGFAIRYVPTSVSQIEGA--DSATLVRGTDRFGHFEIEPRPSYDLDPALVALHKQITE 260          
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|1200319409|gb|OUU40344.1| (hypothetical protein CBC11_03400 [Proteobacteria bacterium TMED51])

HSP 1 Score: 148.288 bits (373), Expect = 2.791e-39
Identity = 93/227 (40.97%), Postives = 132/227 (58.15%), Query Frame = 0
Query:   58 RFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREMEAM-RVNYMESR 283
            R   HL+LPF+  ++   AIL  V ++LG DLLVW T +  K P S+     HQD  Y GL  A D VTVWVAL++A+  +GC+ FVP +  H ++ PH + P     +L RGQ +  E +D  ++AV   L PG+ ++H     HAS PNR+D   R+G AIRY+KPS+RQ  GG R  A LV G+D + +F+L P P        +AL  R +    ++NY + +
Sbjct:   62 RTSCHLFLPFLDGLIRHPAILGSVASILGEDLLVWGTSFFTKEPRSADYVAWHQDLHYWGL-DARDEVTVWVALSQASVESGCMRFVPAS--HIKEAPHADRPAKGA-MLSRGQELI-EAVD-DSQAVNAPLLPGQMSLHHGLTFHASMPNRAD-DRRIGFAIRYIKPSMRQA-GGERGVATLVQGEDRYQNFELAPRPQSVAAPEDIALWQRAVSIQNQINYRDMK 280          
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|1200316318|gb|OUU37386.1| (hypothetical protein CBC11_09205 [Proteobacteria bacterium TMED51])

HSP 1 Score: 148.288 bits (373), Expect = 2.882e-39
Identity = 93/227 (40.97%), Postives = 132/227 (58.15%), Query Frame = 0
Query:   58 RFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREMEAM-RVNYMESR 283
            R   HL+LPF+  ++   AIL  V ++LG DLLVW T +  K P S+     HQD  Y GL  A D VTVWVAL++A+  +GC+ FVP +  H ++ PH + P     +L RGQ +  E +D  ++AV   L PG+ ++H     HAS PNR+D   R+G AIRY+KPS+RQ  GG R  A LV G+D + +F+L P P        +AL  R +    ++NY + +
Sbjct:   62 RTSCHLFLPFLDGLIRHPAILGSVASILGEDLLVWGTSFFTKEPRSADYVAWHQDLHYWGL-DARDEVTVWVALSQASVESGCMRFVPAS--HIKEAPHADRPAKGA-MLSRGQELI-EAVD-DSQAVNAPLLPGQMSLHHGLTFHASMPNRAD-DRRIGFAIRYIKPSMRQA-GGERGVATLVQGEDRYQNFELAPRPQSVAAPEDIALWQRAVSIQNQINYRDMK 280          
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|653540884|ref|WP_027577297.1| (phytanoyl-CoA dioxygenase family protein [Bradyrhizobium sp. WSM1743])

HSP 1 Score: 147.132 bits (370), Expect = 6.928e-39
Identity = 88/216 (40.74%), Postives = 122/216 (56.48%), Query Frame = 0
Query:   58 RFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREME 273
            R   HL   ++  ++  E I+  +  + G +LL W ++  +K P   S  + HQDSTY GL  + DVVT WVALTE+T+ NG LE +P T    +Q+PH  +     N+L RGQ IA E +D    +V +EL PGE ++H  R VH S PNRS+   R+G AIRY+   VRQ++G   + A LV G D FG F  +P P+   D   L+   R  E
Sbjct:   57 RANGHLLFTWLNELIRDERIVDAIEDLYGENLLCWMSDLFIKEPNDPSYVSWHQDSTYWGL-SSPDVVTAWVALTESTKANGALEVIPGTHLK-DQIPH-RDTFAKDNMLSRGQEIAVE-VD-PGSSVMLELEPGEMSLHHVRLVHGSAPNRSETQRRIGFAIRYIPTHVRQLEG--EDTATLVRGVDTFGSFQHEPTPAYDMDPECLSFRQRSAE 265          
BLAST of EWM27109.1 vs. NCBI_GenBank
Match: gi|1123578484|ref|WP_074278802.1| (phytanoyl-CoA dioxygenase [Bradyrhizobium erythrophlei] >gi|1119067193|emb|SIO61459.1| chlorinating enzyme [Bradyrhizobium erythrophlei])

HSP 1 Score: 146.747 bits (369), Expect = 8.256e-39
Identity = 90/223 (40.36%), Postives = 131/223 (58.74%), Query Frame = 0
Query:   58 RFQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALH-AREMEAMRVNY 279
            R +SH+   ++  ++    IL  V  +LGPD+L W T + +K P      + HQD+TY GL  + DV T W+A++ A + +GC++FV  T  H +Q+ H E+  D  NLL RGQ IA E +D  +KAV  EL PG+A++H     H S PNRSD   R+GLA+RY+   ++Q   GRR+ A LV G+D + HF+ + +P    +   LA H A   E +RV Y
Sbjct:   53 RHRSHVLFTWINDMIRHPKILDAVEDLLGPDILCWNTSFFIKEPHDPGFVSWHQDATYWGL-DSSDVATAWIAMSPANKVSGCMKFVAGT--HKQQVQH-EDTFDQNNLLTRGQEIAVE-VD-ESKAVFAELKPGQASLHHVLLFHGSEPNRSD-DRRIGLAVRYIPTRLKQAV-GRRDWATLVRGKDTYHHFESEYVPKRDLEPEALAFHKAVTEEQLRVLY 267          
The following BLAST results are available for this feature:
BLAST of EWM27109.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109286|gb|EWM27109.1|0.000e+0100.00phytanoyl- dioxygenase family protein [Nannochloro... [more]
gi|873242473|emb|CEL91712.1|2.762e-4540.87unnamed protein product [Vitrella brassicaformis C... [more]
gi|764613735|ref|WP_044430855.1|1.251e-4339.06phytanoyl-CoA dioxygenase [Skermanella aerolata] >... [more]
gi|505312433|ref|WP_015499535.1|3.731e-4239.71putative phytanoyl-CoA dioxygenase family protein ... [more]
gi|1085834292|emb|SDT54876.1|9.161e-4140.81chlorinating enzyme [Bradyrhizobium canariense][more]
gi|653048924|ref|WP_027300518.1|5.150e-4041.10phytanoyl-CoA dioxygenase [Rhodospirillales bacter... [more]
gi|1200319409|gb|OUU40344.1|2.791e-3940.97hypothetical protein CBC11_03400 [Proteobacteria b... [more]
gi|1200316318|gb|OUU37386.1|2.882e-3940.97hypothetical protein CBC11_09205 [Proteobacteria b... [more]
gi|653540884|ref|WP_027577297.1|6.928e-3940.74phytanoyl-CoA dioxygenase family protein [Bradyrhi... [more]
gi|1123578484|ref|WP_074278802.1|8.256e-3940.36phytanoyl-CoA dioxygenase [Bradyrhizobium erythrop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3565rna3565Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications