rna356, rna356 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna356
Unique Name	rna356
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1296
Alignment location	CM002455.1:869968..871958 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100003g140.1872.mrna
Orig protein id	gnl\|cribi\|Naga_100003g140.1872
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:869968..871958 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g140	gene343	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna356	rna356-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30355.1	cds356	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:869968..871958-
coding sequence from alignment at CM002455.1:869968..871958-

mRNA sequence

>rna356 ID=rna356|Name=rna356|organism=Nannochloropsis gaditana|type=mRNA|length=1296bp
ATGTATATTGGAACTGGTGGAGTGAGCGCTCTAAACATCGTTTTTGGGAT
CCTTGCCGTGGTTTTGGTGCTTTGTATGCAGAAAGAGCACGCGATACGTT
GCTACGTTTTACCGTTACAAAGAAATGCTGCGCGGCTCTTCAACTTAGCG
CCCACGTACAGCTTTTTCATCCTCTTGACAGCGTATGTGACGTCTGGCAA
ACCTGTGTGGGACGTGTTCATGGCTATCGTGGACGGCTACGCCCTGTATT
GTTTTTTCGGCCTCGTTATCCTTGGCGCGGGGGGTGAGAGTCGTGTGGTC
ACCCGTTTGGCCGCCGCCTTGCCCAAAGTGGAAGATGATTTAACTGTCAA
TGGGGCTGTTGCTCAAGTTAGTGGAATAAGAAACGACAAACTCAAATTTT
CGGCCTGCCTTTGCATCTCGCTACAATTTGAAAGCGCGCAACGCATTTAC
ACGTTTCTACAGCTCTCTGTCAAGCAGGTTATGATTTCTCGACCGATCCT
CTTGGCTGCCAGTTCGATATGCGACCGCTTGGGCCATGGAGTGCTTGCAT
CAATTGGGGAACGCGGATTTAGAATCTTGAGTCTGCTGGTCCTGGTTTAT
GCCGTTATGACGATAGGACGTACGTATCACCTCCTCCGTCAACAGATTTG
GCCAGCTTTCAATCCCGTTGCGGCATTCATGGTCGTCAAAGGTTTTATTT
TGCTTATCACGATGCAAGATTTTGTGATTGCGATGATATTTTCGGCCCGT
GATCCACATTATGTGGAAAGAAGCACTCGCGCAGCCCTGGCAATATACTC
GCTTGTAGTATCAATCGAAAGTATTTTGTATCTGATAGTAGTGAGACAAT
TTCTTAAGCCTCGAATTTTTCAAAGTTACAGTACTCAGTCTTTTTGCTCA
ATGACTATATCCTTTTGGCAATTCCTCGAGGAAGTGTATACGTTTTCAAA
TGTACTTGGAGGCGATTTGCCTTCCATGCAGGATAAAGGCAGTTCCGCTT
TGTCAACAGCATATGATGCTGCAGTCGAAAAGCTTCGGTACAAATACCTC
AGCATCGATTTCACATGTAATGTCAATCACTCTTCCATGCTGGTTACATA
TACTTGCCGCACTTCCTATCCTGTTGCCTGGGCGGGAAATCATTCTCTAC
CGCCTTGTTTTTATCATAAACGGCGTGAAAGTGTAACGACAAAGAACGAA
GGCTATAATTGCGGAATGACATACGTACATAACTTCAGACTGAAAACTCA
TGCACCACTTGTCCAAGTCTCGTCACACCTAGGGCAACAGGTCTAA

protein sequence of rna356

>rna356-protein ID=rna356-protein|Name=rna356|organism=Nannochloropsis gaditana|type=polypeptide|length=167bp
MQRGFNEIQCRHRAASHDKNTALRILTPQIKCNCPFTAYVPLNIMSSFLR
SACNLGHRTTSLKSCSTPVIAQHRLRDRESTGEVRISFSAIFSEPGPRTP
RAQRHDAPRTAGSCTMIRQKTSDLKGLGFGLLPHALRHQTCFLPASETSG
RITPISHSPDLLHSKEC

mRNA from alignment at CM002455.1:869968..871958-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna356 ID=rna356|Name=rna356|organism=Nannochloropsis gaditana|type=mRNA|length=1991bp|location=Sequence derived from alignment at CM002455.1:869968..871958- (Nannochloropsis gaditana)
ATGCAACGGGGTTTTAACGAAATTCAATGTCGCCACAGAGCTGCTAGCCA
CGACAAAAACACGGCGCTACGAATACTTACACCGCAGATTAAGTGTAATT
GCCCTTTCACAGCTTACGTACCACTAAACATTATGTCTTCATTTCTACGA
AGTGCGTGCAACTTGTAACTGACAACGAAGATTCACGATCATATGCCAAA
TGAATCCCTTGAACCCCTTAGGGGCAGGATATGCTCGCCTTTTCTAATTA
AGCCAAACGGGTTCTGTCGTACAATTTTGAAGTAGTGTCTAAAACGGACG
TGGTGATCGTGATGAGGCGGATCTTCGCAAGCTTTTTCTGAAACAGGTGT
TTACGCCATTACGATCAGATGTCCTAGAGGACATCGAACGACAAGTTTAA
AATCATGCAGTACTCCAGTAATTGCGCAACACCGCTTACGTGACAGAGAG
AGCACGGGTGAAGTTAGGATCTCTTTTTCGGTACGAACGTTTTGGAGTTT
ACACTGGCGAGGAGGGTGTACAGCCGGAGGATGACAATGAACATTATCAA
GCCTTCAAAGCAATTTTAGTGGATAACAGCTCCTTTGCCGTATACTTATT
ACGCGTTGTAAGAAAAATTGGCGACTGAAATCGACCCGGACCCAGCAGGG
TCTCGTGCGGCCCATTTAGCCCGCTACTTCATAATATGCTGCAAGCAGGG
CCGTAACCCCCACAAGGGGTCACCATGAGAATCAGTAATTACTGGTAAGA
TTTCATTCATGAGTGACGCTTGAGGTAGTAGAGTGGCCTGACGAAATAAG
TTGGCGCCCGATTTGTGATCGGAAAGTGCATTTTTGACACTCTAAAATGC
GTTTTTGCCAAGGCCCGGGAAGGGACGCCCGTATTCCCCCCTTTGCCGTA
GGTACCATTTCGAGCTTCTTCAGTTTGGACAGACCATCTTCTGCGGGACG
GACGCAGTCTCATACATGAGTTATGCCTGACCCTCGATTCATTGACCGCC
ATTCCTAAATGACAAATATTAGTAGTAGTGACGGCCCTGGCTGCAAGACA
ATTCATTACACCCGAAGAGAGCTATTGAGATCGCACTGTTTCATGGTATC
GTGCTCAATCCAATTTGTTGTGACAAAATGCGAGATAAGCTTCGGAAGCT
GGTTTTCGTGCTTGCCTGAAATAGGCATTTCCATGTCCTGTTCCGCATGC
CAAGTGGAACTGTTCTCACATGATACTGAGCTGTACCTCAGACTGACTGG
ATGACTTCCTACGTTTAGAATTTCTTTCTTGAACAATAATTTGTTGACAG
GACTTTCTTATAAAAAATATTACAGCGCTGCGCTGCTCTGCAGAGCACGC
TCCTCACGAATCATAGCCAGCCTCGGTCGCGGAACGTCTAGATAAATTTC
CTGTCACTTATTTTCAACAGGGATGATACTACAGCTGGTCGCGCACAGTT
GGTCCCCGCAGCTCTTCGCAGAACCTAGATGGCGGTGCTGGTCACCGTAT
CAGCGTGGCTCCTGTAGTCTGTATGACACATTCCTACTAATAATATCCGC
GAGCAGGCGATCTTCAGCGAGCCCGGCCCCAGGACGCCGAGGGCCCAACG
GCACGATGCCCCCCGCACCGCTGGGTCGTGCACCAGTAAGTAAGGTTGCA
TGAGTCTGAGACACTTCTCGTGACACCGGCAGAGGGATCTGACAACATTT
GCTTATTAGGCGTAAAGATACTCACCCGATTCTGGTACTTGTACACAATA
TCGCGCTAATGATTCGGCGTCCTACACAGTGATACGGCAGAAGACCTCAG
ACCTGAAGGGACTTGGGTTTGGGCTACTACCTCATGCCCTACGTCATCAA
ACCTGTTTCGTTTGACCCAATTAGGTCTTACAAGTGAATTAGCTTGCAAT
TTAACCCGATAAGCTACCTGCAAGCGAAACATCTGGGCGGATAACACCGA
TTTCTCATTCACCTGACCTACTGCACTCCAAAGAGTGTTGA

Coding sequence (CDS) from alignment at CM002455.1:869968..871958-

>rna356 ID=rna356|Name=rna356|organism=Nannochloropsis gaditana|type=CDS|length=2520bp|location=Sequence derived from alignment at CM002455.1:869968..871958- (Nannochloropsis gaditana)
CTACCTGCAAGCGAAACATCTGGGCGGATAACACCGATTTCTCATTCACC
TGACCTACTGCACTCCAAAGAGTGTTGATGATACGGCAGAAGACCTCAGA
CCTGAAGGGACTTGGGTTTGGGCTACTACCTCATGCCCTACGTCATCAAA
CCTGTTTCGCGATCTTCAGCGAGCCCGGCCCCAGGACGCCGAGGGCCCAA
CGGCACGATGCCCCCCGCACCGCTGGGTCGTGCACCAAGGACATCGAACG
ACAAGTTTAAAATCATGCAGTACTCCAGTAATTGCGCAACACCGCTTACG
TGACAGAGAGAGCACGGGTGAAGTTAGGATCTCTTTTTCGATGCAACGGG
GTTTTAACGAAATTCAATGTCGCCACAGAGCTGCTAGCCACGACAAAAAC
ACGGCGCTACGAATACTTACACCGCAGATTAAGTGTAATTGCCCTTTCAC
AGCTTACGTACCACTAAACATTATGTCTTCATTTCTACGAAGTGCGTGCA
ACTTCTACCTGCAAGCGAAACATCTGGGCGGATAACACCGATTTCTCATT
CACCTGACCTACTGCACTCCAAAGAGTGTTGATGATACGGCAGAAGACCT
CAGACCTGAAGGGACTTGGGTTTGGGCTACTACCTCATGCCCTACGTCAT
CAAACCTGTTTCGCGATCTTCAGCGAGCCCGGCCCCAGGACGCCGAGGGC
CCAACGGCACGATGCCCCCCGCACCGCTGGGTCGTGCACCAAGGACATCG
AACGACAAGTTTAAAATCATGCAGTACTCCAGTAATTGCGCAACACCGCT
TACGTGACAGAGAGAGCACGGGTGAAGTTAGGATCTCTTTTTCGATGCAA
CGGGGTTTTAACGAAATTCAATGTCGCCACAGAGCTGCTAGCCACGACAA
AAACACGGCGCTACGAATACTTACACCGCAGATTAAGTGTAATTGCCCTT
TCACAGCTTACGTACCACTAAACATTATGTCTTCATTTCTACGAAGTGCG
TGCAACTTCTACCTGCAAGCGAAACATCTGGGCGGATAACACCGATTTCT
CATTCACCTGACCTACTGCACTCCAAAGAGTGTTGATGATACGGCAGAAG
ACCTCAGACCTGAAGGGACTTGGGTTTGGGCTACTACCTCATGCCCTACG
TCATCAAACCTGTTTCGCGATCTTCAGCGAGCCCGGCCCCAGGACGCCGA
GGGCCCAACGGCACGATGCCCCCCGCACCGCTGGGTCGTGCACCAAGGAC
ATCGAACGACAAGTTTAAAATCATGCAGTACTCCAGTAATTGCGCAACAC
CGCTTACGTGACAGAGAGAGCACGGGTGAAGTTAGGATCTCTTTTTCGAT
GCAACGGGGTTTTAACGAAATTCAATGTCGCCACAGAGCTGCTAGCCACG
ACAAAAACACGGCGCTACGAATACTTACACCGCAGATTAAGTGTAATTGC
CCTTTCACAGCTTACGTACCACTAAACATTATGTCTTCATTTCTACGAAG
TGCGTGCAACTTCTACCTGCAAGCGAAACATCTGGGCGGATAACACCGAT
TTCTCATTCACCTGACCTACTGCACTCCAAAGAGTGTTGATGATACGGCA
GAAGACCTCAGACCTGAAGGGACTTGGGTTTGGGCTACTACCTCATGCCC
TACGTCATCAAACCTGTTTCGCGATCTTCAGCGAGCCCGGCCCCAGGACG
CCGAGGGCCCAACGGCACGATGCCCCCCGCACCGCTGGGTCGTGCACCAA
GGACATCGAACGACAAGTTTAAAATCATGCAGTACTCCAGTAATTGCGCA
ACACCGCTTACGTGACAGAGAGAGCACGGGTGAAGTTAGGATCTCTTTTT
CGATGCAACGGGGTTTTAACGAAATTCAATGTCGCCACAGAGCTGCTAGC
CACGACAAAAACACGGCGCTACGAATACTTACACCGCAGATTAAGTGTAA
TTGCCCTTTCACAGCTTACGTACCACTAAACATTATGTCTTCATTTCTAC
GAAGTGCGTGCAACTTCTACCTGCAAGCGAAACATCTGGGCGGATAACAC
CGATTTCTCATTCACCTGACCTACTGCACTCCAAAGAGTGTTGATGATAC
GGCAGAAGACCTCAGACCTGAAGGGACTTGGGTTTGGGCTACTACCTCAT
GCCCTACGTCATCAAACCTGTTTCGCGATCTTCAGCGAGCCCGGCCCCAG
GACGCCGAGGGCCCAACGGCACGATGCCCCCCGCACCGCTGGGTCGTGCA
CCAAGGACATCGAACGACAAGTTTAAAATCATGCAGTACTCCAGTAATTG
CGCAACACCGCTTACGTGACAGAGAGAGCACGGGTGAAGTTAGGATCTCT
TTTTCGATGCAACGGGGTTTTAACGAAATTCAATGTCGCCACAGAGCTGC
TAGCCACGACAAAAACACGGCGCTACGAATACTTACACCGCAGATTAAGT
GTAATTGCCCTTTCACAGCTTACGTACCACTAAACATTATGTCTTCATTT
CTACGAAGTGCGTGCAACTT

Synonyms

Publications