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Properties
| Property Name | Value |
|---|
| Product | histidyl-trna synthetase |
| Orig transcript id | gnl|cribi|Naga_100046g1.5122.mrna |
| Orig protein id | gnl|cribi|Naga_100046g1.5122 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:694183..696236 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3557 ID=rna3557|Name=rna3557|organism=Nannochloropsis gaditana|type=mRNA|length=2934bp
CGGCCCCTTTCTTTCTGTGCGCCACGAACGGGCACAGAGGGTACAGTGAG
ATGATGAACGCATTCAATGAGACGTTCGTGCTCCCGCTTTTTGCGAACGC
GACCTTGACGTGTCAGATCGTGCATTCGACCGCACGCCGCGTCCTAAACT
TGACAGCCACCCTGCCTCAAGTGACCTATGGTGCTCCCGTGCCCTCCGTC
ATGAAGATCTCAAAGGATATTCTGCGTCGCATCATTGATGGTTCTTTTTG
GAAACGCTCAGCTCCCAGGCTTCGACTTGTCGTGAGTCCTGGTCTCGAGC
ACGATGAGTCGGGTCTGATGAAAGTTCTTCAACGCATCGTAACCAGCTTG
CAGTCGGGCACCTTTGTAGAGGCGGTGGAGGAGGACTTCGAGTGGACCGC
TGTCGAGACCGCAAGTAACTCTACCGCTGCGGCTGCCCAACAAAGTCGAC
GTCGACAAAAGCGTGAGCGCTTGCGGCAGCGGCGGCTCGGTACTGGGTTG
GGTGGGGATGAAAATGAGGACACGAGCCAGCCTTCTGCCGGGGACGACAG
CGACAAGCTTTTGAGGAGAAATAGTGCAAGACAATGGTCGCAGCATATCA
ATCCGGTGCTTGAAGGTGATCTTTCCTGCGATTTCTCAAACGTGGGGGCG
TCTATCCAGTATCCTTATCTGCGACTCAGCGGCTTCGACAACCTGGCCTT
GAAAGCAGACGGAAAGAGAAGACTTGAGCAAGCATACGACTCCAACAGCA
CCATATCTGATCAGTCTGCATGCCTTTTGGCCTTGTTGGCATTTGTGAGC
AGCGACCCGGCCGTGCTGTACGTTGAGGAGTATTCCTCTGTTGTTCTGTA
CAATGCCGCGGCTGCTCATCTAACGCAGTCAGGTGACGATGGACAGTACA
ACCAAGCTACCAGCTCTTTCCCGCTCTACGACGTGGGTCTGGACGGTACA
AATCAGGTGGTGCAAGTCGTCGACACGGGCGTCGATCAGAACAGTTGTTT
CTTCAGCGATGCCAAAGGTCCTCTACCGACGACTACCATAAGCGAGGCTG
CTTTCGACTCGAGCAGACGAAAGATTGTCCAGTACGTGCAATGGGCGGAC
AGCACAGACGTGGAAAATGGTCATGGGACCCACGTGGCGGGAACTATGGC
AGGAGTCAGTTTGGATACGTCCATGGACATGTCATCCTACGAAGGAGTGG
CGCGCGGCGCGAAGCTGGCATTTTTTGACATGGGTTTCAGCTCTGGGGGC
TGACTTTGCCGTCCAACTTCGCGACGCGTCTTTTCCCGCCGGGATACGCT
GCGGGAGCGAGGATTTTCAGTAACTCTTGGGGCACACCGTCAGCCAAGTT
TTATACATCGGCAGACACAGAGATCGACAAGTTCATGTATGAGTACGATG
ACACTCTGGTGCTCGTGTCAGGAGGCAATAAAGGACGCGAAGGCATTGGT
GGTGTCGCAAGCCCTGCCCTATCCAAGAACGTCTTGTCAGTGGGAGCCTC
TTTGAGTAATCGATACGCCGACTTGGATCCCACTCATGTAGCCTACTTCT
CATCCTGGGGTCCAACAAAAGATGGCCGCATCAAGCCAGACATTGTTACT
CCCGGACGCCGGCTAGTCTCGGCTGCGTCGGGAGCAACCTGCGGAGTCAC
TATCAAGCAGGGCACGTCCATGGCCTGTCCTGTAGCAGCGGGATCCGCCG
CGATGGTCCGGCAGTATTTCGTGGAGGGATGGTACCCGCGCGGAGTGAAA
AGAGCCGCCGATGGTTTTGTTCCAACAGGTGCTCTGCTCAAGGCGATGCT
GATCAATTCTGCAGTGCCTATGGCAGCGTTTGATTTCAACAACGGGACGC
TACTGCCACTTGGATTGCCACCTGATGTGTATCAGGGCTATGGACGGATC
AAGCTCGCCGACGTGCTGCCTATCAAGAGCCTGGGGGCGACTACCACGCC
GAACCTGTACGTTGTGAATGGAGCCAGTATCAAGGAGGAAGAAAAGCACG
TGTACAAGTTTAGCATCCCCGCCACAGGAAAGAGTCCGGTCAAGATCACG
TTGGTGTGGATCGATCCTGACACAACAGCTAGCTCTGCGACGACTGTGTT
GCATGACCTGGATCTTATGGTATACAGTCAGAAAGAAGGCTCGTCCTACT
TTCCCAACGGTCGAACGAATGCGGACAACGTGAATACGGTCGAAAAAGTC
GCACTGTACTCGCCCACGCCGGGTGACACCTTGACCGTGACAGTGACCGC
GACGTCTGTTGCCACTCGGCCCGAGCAGCGATACGCTTTGGCGGCTTCCG
GGAACTTTGTGTCGGGGGCATGGTACTGTCAGTCTCCTCGATCGTCCCGT
GCTGGGGAGGTGTTTACTACCGAGAACTGCGATCAGAGTTGCGATAACAA
CGGCTTTCTGAAGGAGCCTGTGTGTTGCGACGCATCAGCTGGGAGCGTGT
GCAGTGCCCAAGAAATCGCCGCTGCTGCTGCCGTTGGTCTGGAATGTGAT
GCGGCAACTCGGCCCATCGAATGTCCGGCGCCGGTCCCTGTAGTACCACC
GACGAAAGCCCCGACAAGGCGCCCGACAAGGTCTCCGACGGAAGCCCCGA
TAAGATCTCCAACGAAGCCTGTCACGGGGGACTGGTACTGTCAGTTTCCT
CGATCAACTCGCAGCAACGATGCTCAGACCATTAGAAACTGCCTCGTAAG
TTGCGACGACAGTGGCTTTCTAAAGAACCCTGTATGTTGCCCTCCTCTTA
CAGTTGGGTCTGTTTGCAATGACGAGGAAGCATCGGCAGCTCAGGCAAAT
GGCGTCGCATGCAGCACTGCAGCGCGGCCTGAGGAATGCGCAGGGGCGCC
TGCTCCGAACCCTCCGGCCCCGGCCCCTGCAGCTCCGTCGCCTGTGCCAG
CTGGACGCGGGGCCTGGTACTGCCAGTATCCTCG back to topprotein sequence of rna3557 >rna3557-protein ID=rna3557-protein|Name=rna3557|organism=Nannochloropsis gaditana|type=polypeptide|length=552bp
MRSIGAKRLGSSTRTQDFTTLLAVFCVLMKVTTCRAWHYSGRIATSRQML
SGIGPLLRRKSFIIHPATSTKSRQHISITANAAAEGSRGSAAVAQDLKNR
ETQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDA
PVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKR
NGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLS
AITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKL
EKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQ
LRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGG
GRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSLSLGLDALVFA
MEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIV
GPEEVAGCNVRVKEMATGQQHVVAIANLESWISATFTTTSPESAFADSVN
RS back to topmRNA from alignment at CM002461.1:694183..696236- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3557 ID=rna3557|Name=rna3557|organism=Nannochloropsis gaditana|type=mRNA|length=2054bp|location=Sequence derived from alignment at CM002461.1:694183..696236- (Nannochloropsis gaditana)
AACGGTCAGACACGAGAAGGATACTCCCACGTCCCAGGCGTAATAGGACA
GCTCACTTGAGTCTCCCTACTTTGTCCTGATGCTATCGGGGCAAAAGAAT
TACTTTCTCACGCTCAAATATTTCTTTTTGATAGGATTAGGACTCGCAGT
GTGATCTGGCGGTCTTCCTCTTGTGACGCGCTGTTTGAAGGCTTTAAATG
CGTTCCATCGGTGCAAAAAGGCTTGGCTCAAGCACCCGCACTCAGGACTT
CACCACGTTGTTGGCAGTCTTTTGTGTATTAATGAAGGTCACGACGTGTA
GAGCCTGGCATTATTCTGGTAGAATTGCGACAAGTAGGCAGATGCTCTCA
GGCATTGGTCCCTTGTTACGCCGCAAATCCTTCATCATACATCCTGCCAC
GTCAACAAAGTCAAGGCAACACATTTCCATAACCGCAAACGCCGCCGCTG
AAGGTAGCCGGGGTAGCGCGGCAGTCGCACAAGATTTAAAGAACAGGTGA
AGAGATTACTGAATGAAAAATCATGGTGAAAATAATTGCGCAAGAAAGGA
CAGGGGAAAGCCTTCGCAGAGTGCGCAGGGCATCATGTTTCCCACAATTA
ATTGTTTTTGGGCCCTTTTTGATAGCAGGGAGACGCAAAAGGAGAGACAG
GGCAAGTTAGATTTAAACCCTCCGCGAGGTACACGAGACTTTTATCCGGA
AGACATGCGGACGCGGAGTTGGCTCTTCGAACTCTGGCGGCAGGTAGCCC
GTGACCACGCGTTCGAGGAATACGACGCACCGGTCCTTGAATCCGAGGAT
TTATTTGTCCGCAAGGCTGGAGAGGAAGTCACAGAACAGCTGTACAATTT
TGAGGACAAAGGGGGTCGACGCGTGGCTTTGCGGCCTGAAATGACGCCAT
CGTTGGCAAGGATGGTGATGGCGAAACGCAATGGCTTAGTCATGCCGGTC
AAGTGGTTTTCATTTCCGCAATGCTGGCGATACGAACGTATGACCCGTGG
CCGTCGCCGCGAGCACTACCAATGGAACATGGACGTATGGGGAGTCTCGG
GTGTGGAGGCCGAAGCGGAATTGCTATCTGCGATCACGACATTTTTTAAA
CGCGTGGGCCTCACAGCAGAAGACGTCGGCATCAAAGTAAGTAGCCGAGG
AGTCCTAGCAGAGGTTCTTGCTGCTTTGGATGTCCCAGATGCAAAATTTT
CGGCGACATGCGTGCTGGTGGACAAGTTGGAAAAGTTACCGTTAGAGGCG
ATCCAGGGGGACCTGACAGCGTTAGGTTTGGAGGAGTCCGTTGTGCGACG
ATTGCTTGACGTCGTCCAAAGCAGAGACTTCCCTAGTCTGGAAACAGCGA
TTGGTGCAAAAAGCACGGCCTTGGCTCAGCTACGGCAGTTGTTTGAATAC
GCCCGGGCATACAATTTCGAGGAATGGTTGGTCTTGGATGCGTCTGTAGT
CAGGGGGCTTGCGTATTACACAGGAATAGTCTTTGAAGCATTTGATAGGA
AAGGAGAACTACGAGCAATATGTGGTGGAGGGCGGTATGACAAGCTTCTG
GAGACCTTCGGAGGGGAGGCCTTGCCTGCTGTGGGCTTTGGGTTTGGCGA
CGCTGTAATTATGGAGCTCTTGGAGAGCAAAGGGCTAGTTCCGTCGCTAT
CATTGGGTTTGGACGCGCTTGTCTTTGCGATGGAAGCCGGCCTACAGGGT
ATCGCAATTAGAGCTGCGACTTCATTGCGCGCAGCGGGCCTCACAGTAGA
CTTACAGCTAGAAGCGCGGAAGACCAAATGGGCTTTGAAGCACGCAGACA
GGCTTGGGGCGACGTACGTCGTCATTGTTGGACCCGAGGAGGTAGCTGGA
TGTAACGTTCGAGTGAAGGAAATGGCGACAGGTCAGCAGCATGTCGTGGC
CATCGCGAACTTGGAGTCTTGGATAAGTGCGACTTTCACGACGACGTCGC
CAGAGAGTGCGTTTGCGGATAGTGTCAACCGTTCATGACGAGTGCTGAGA
ACTACCTAGAGGCATGAATGCTAAAGATAAATAATCCATGATTGTCTCAC
CGGT back to topCoding sequence (CDS) from alignment at CM002461.1:694183..696236- >rna3557 ID=rna3557|Name=rna3557|organism=Nannochloropsis gaditana|type=CDS|length=3318bp|location=Sequence derived from alignment at CM002461.1:694183..696236- (Nannochloropsis gaditana)
GGAGACGCAAAAGGAGAGACAGGGCAAGTTAGATTTAAACCCTCCGCGAG
GTACACGAGACTTTTATCCGGAAGACATGCGGACGCGGAGTTGGCTCTTC
GAACTCTGGCGGCAGGTAGCCCGTGACCACGCGTTCGAGGAATACGACGC
ACCGGTCCTTGAATCCGAGGATTTATTTGTCCGCAAGGCTGGAGAGGAAG
TCACAGAACAGCTGTACAATTTTGAGGACAAAGGGGGTCGACGCGTGGCT
TTGCGGCCTGAAATGACGCCATCGTTGGCAAGGATGGTGATGGCGAAACG
CAATGGCTTAGTCATGCCGGTCAAGTGGTTTTCATTTCCGCAATGCTGGC
GATACGAACGTATGACCCGTGGCCGTCGCCGCGAGCACTACCAATGGAAC
ATGGACGTATGGGGAGTCTCGGGTGTGGAGGCCGAAGCGGAATTGCTATC
TGCGATCACGACATTTTTTAAACGCGTGGGCCTCACAGCAGAAGACGTCG
GCATCAAAGTAAGTAGCCGAGGAGTCCTAGCAGAGGTTCTTGCTGCTTTG
GATGTCCCAGATGCAAAATTTTCGGCGACATGCGTGCTGGTGGACAAGTT
GGAAAAGTTACCGTTAGAGGCGATCCAGGGGGACCTGACAGCGTTAGGTT
TGGAGGAGTCCGTTGTGCGACGATTGCTTGACGTCGTCCAAAGCAGAGAC
TTCCCTAGTCTGGAAACAGCGATTGGTGCAAAAAGCACGGCCTTGGCTCA
GCTACGGCAGTTGTTTGAATACGCCCGGGCATACAATTTCGAGGAATGGT
TGGTCTTGGATGCGTCTGTAGTCAGGGGGCTTGCGTATTACACAGGAATA
GTCTTTGAAGCATTTGATAGGAAAGGAGAACTACGAGCAATATGTGGTGG
AGGGCGGTATGACAAGCTTCTGGAGACCTTCGGAGGGGAGGCCTTGCCTG
CTGTGGGCTTTGGGTTTGGCGACGCTGTAATTATGGAGCTCTTGGAGAGC
AAAGGGCTAGTTCCGTCGCTATCATTGGGTTTGGACGCGCTTGTCTTTGC
GATGGAAGCCGGCCTACAGGGTATCGCAATTAGAGCTGCGACTTCATTGC
GCGCAGCGGGCCTCACAGTAGACTTACAGCTAGAAGCGCGGAAGACCAAA
TGGGCTTTGAAGCACGCAGACAGGCTTGGGGCGACGTACGTCGTCATTGT
TGGACCCGAGGAGGTAGCTGGATGTAACGTTCGAGTGAAGGAAATGGCGA
CAGGTCAGCAGCATGTCGTGGCCATCGCGAACTTGGAGTCTTGGATAAGT
GCGACTTTCACGACGACGTCGCCAGAGAGTGCGTTTGCGGATAGTGTCAA
CCGTTCATGAATGCGTTCCATCGGTGCAAAAAGGCTTGGCTCAAGCACCC
GCACTCAGGACTTCACCACGTTGTTGGCAGTCTTTTGTGTATTAATGAAG
GTCACGACGTGTAGAGCCTGGCATTATTCTGGTAGAATTGCGACAAGTAG
GCAGATGCTCTCAGGCATTGGTCCCTTGTTACGCCGCAAATCCTTCATCA
TACATCCTGCCACGTCAACAAAGTCAAGGCAACACATTTCCATAACCGCA
AACGCCGCCGCTGAAGGTAGCCGGGGTAGCGCGGCAGTCGCACAAGATTT
AAAGAACAGGGAGACGCAAAAGGAGAGACAGGGCAAGTTAGATTTAAACC
CTCCGCGAGGTACACGAGACTTTTATCCGGAAGACATGCGGACGCGGAGT
TGGCTCTTCGAACTCTGGCGGCAGGTAGCCCGTGACCACGCGTTCGAGGA
ATACGACGCACCGGTCCTTGAATCCGAGGATTTATTTGTCCGCAAGGCTG
GAGAGGAAGTCACAGAACAGCTGTACAATTTTGAGGACAAAGGGGGTCGA
CGCGTGGCTTTGCGGCCTGAAATGACGCCATCGTTGGCAAGGATGGTGAT
GGCGAAACGCAATGGCTTAGTCATGCCGGTCAAGTGGTTTTCATTTCCGC
AATGCTGGCGATACGAACGTATGACCCGTGGCCGTCGCCGCGAGCACTAC
CAATGGAACATGGACGTATGGGGAGTCTCGGGTGTGGAGGCCGAAGCGGA
ATTGCTATCTGCGATCACGACATTTTTTAAACGCGTGGGCCTCACAGCAG
AAGACGTCGGCATCAAAGTAAGTAGCCGAGGAGTCCTAGCAGAGGTTCTT
GCTGCTTTGGATGTCCCAGATGCAAAATTTTCGGCGACATGCGTGCTGGT
GGACAAGTTGGAAAAGTTACCGTTAGAGGCGATCCAGGGGGACCTGACAG
CGTTAGGTTTGGAGGAGTCCGTTGTGCGACGATTGCTTGACGTCGTCCAA
AGCAGAGACTTCCCTAGTCTGGAAACAGCGATTGGTGCAAAAAGCACGGC
CTTGGCTCAGCTACGGCAGTTGTTTGAATACGCCCGGGCATACAATTTCG
AGGAATGGTTGGTCTTGGATGCGTCTGTAGTCAGGGGGCTTGCGTATTAC
ACAGGAATAGTCTTTGAAGCATTTGATAGGAAAGGAGAACTACGAGCAAT
ATGTGGTGGAGGGCGGTATGACAAGCTTCTGGAGACCTTCGGAGGGGAGG
CCTTGCCTGCTGTGGGCTTTGGGTTTGGCGACGCTGTAATTATGGAGCTC
TTGGAGAGCAAAGGGCTAGTTCCGTCGCTATCATTGGGTTTGGACGCGCT
TGTCTTTGCGATGGAAGCCGGCCTACAGGGTATCGCAATTAGAGCTGCGA
CTTCATTGCGCGCAGCGGGCCTCACAGTAGACTTACAGCTAGAAGCGCGG
AAGACCAAATGGGCTTTGAAGCACGCAGACAGGCTTGGGGCGACGTACGT
CGTCATTGTTGGACCCGAGGAGGTAGCTGGATGTAACGTTCGAGTGAAGG
AAATGGCGACAGGTCAGCAGCATGTCGTGGCCATCGCGAACTTGGAGTCT
TGGATAAGTGCGACTTTCACGACGACGTCGCCAGAGAGTGCGTTTGCGGA
TAGTGTCAACCGTTCATGAATGCGTTCCATCGGTGCAAAAAGGCTTGGCT
CAAGCACCCGCACTCAGGACTTCACCACGTTGTTGGCAGTCTTTTGTGTA
TTAATGAAGGTCACGACGTGTAGAGCCTGGCATTATTCTGGTAGAATTGC
GACAAGTAGGCAGATGCTCTCAGGCATTGGTCCCTTGTTACGCCGCAAAT
CCTTCATCATACATCCTGCCACGTCAACAAAGTCAAGGCAACACATTTCC
ATAACCGCAAACGCCGCCGCTGAAGGTAGCCGGGGTAGCGCGGCAGTCGC
ACAAGATTTAAAGAACAG back to top
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