rna3555, rna3555 (mRNA) Nannochloropsis gaditana

Overview
Namerna3555
Unique Namerna3555
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1800
Alignment locationCM002461.1:687667..688817 +

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF829, TMEM53
Orig transcript idgnl|cribi|Naga_100419g1.1243.mrna
Orig protein idgnl|cribi|Naga_100419g1.1243
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:687667..688817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100419g1gene3425Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3555rna3555-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27130.1cds3546Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3555 ID=rna3555|Name=rna3555|organism=Nannochloropsis gaditana|type=mRNA|length=1800bp
ATGCACTACAAACCAATAAATCTCAGTAAATCAAACTTTTTAATATGCTC
TATACATTTCAGACGTCTTAAGAATTTAAGGGCGCACATGGCGATGGTTG
GGCTGCATCGTGTTGCCCATATCACTTTTGCCGCCGCAATGTCGCTGCTG
CTCGCGTCGTCCACGTCCGCACAAACATTTCCCGGTTGTTCTTCTACAGA
TATGCGTCAGCTTACATGGGTTGGCCGAGGACTGATGAACTGCTTCAGTC
TGTCCCTCGGCGAGGTCTTTATGTTCATGGGTGGCCTATCTTCCGATCAA
AGTATCTGGTTAGACCGGTGCTCTGAGTCTTCCGACCAGTACCAAAATGA
ATGTTTCCAGCTTCTTGAGTCAATACTGCAACAAGCTGCGAGTCAACCAG
GATCTGTGCCTGCTAAAGTGGTGGGAGTCATTTATCAGAATCCCCCCGAG
GTGCTCAATTGCGTTGCTGAAGTTAATAACCAAGTAGGCAGCTTTTCTCC
AACTTGTACAGATGGTGTCAGCCTGGGCCAAATCACAAGATCATCAGCAC
GTTTGGCGCCGTACGTGAACAGCATCAAGCCATGGCACCTCCCTCCGCAG
ATGGAGGGATGCGCGGTAAATGATCTACTCAACCTGCAGTTAGCCTACTT
GCCCTTCATTGACTGTCTTAATTTCAACTTTACTCAATTGATTGAAGGCT
TCGGCTCGTCTAGTCCTAATATGGGAGCACAACTGGAGGATGCTACCATC
CGTGCCGGTATTAGCTGCCTGTATGACCCGCACATGACCAATTCTGATTG
CATGTATCTCGTTATATTGGCCACCACAAAGCTACAAGGAGGAAGCTGGA
GCGACATGGGTGTGTACGCTATGCGAGCCCTGACTGACTATCCGCAGGCC
TGTCAATGTGTTCGAGGAGCGAGTCAATCAGCCGCATATCAAGCCGTATC
CACGAGTTGCCCAGCACACGATTCACTTAATTTTCTGACGGCCTTGGAGG
CTTCTTGTGCATTTGAACCCCAGATCCAGTCTTCGCTGTCTAAAGCACTC
AACGGCTGCTCTGACGCTGATGTAGTGCGTGCTGAGCTAGTTGGCTTACA
AATTTTAGATTGTATGGGTGCTGACGGGGGGGATTTGGCAGGGAGCACAG
ATGAATTGACAGAGGCCCGTATAGCTCAGATAGCGAACTGTGTCAATGAC
CCTGGATATGAGAATGCAGAATGCTTGGGCTTACTTGGCTCCTTGGCAAG
AATCGCAGCTGATGCACCTGATAGCTTGGAAGCGAAACTAGTCGATGAAA
TGACCACAGATGGCTCTGAGTTTTGTGCATGTCTGGATCGGGCTGCGCAC
AGTCCACCTGCAAATGACCTTGGAGCCGTATGTGAGGTACCTTTCTCGGG
CGTAGACTTCCTGCGGGAAAACAAAAAATATTGCGAAGCAATTGCTGCTG
TGCCTCCTGCATTCTGGGCGACAGCCGCTGCAGGGATTGTGGCTGCGGCT
AACGCGCCTCTCTCAACTGAAACCGCAACGGTCCATTCCGTGTCGACTCG
TCCTGGACAGGACACTGTGGAGATTTCGCCTTCATCCTCGCATCGTGGCA
AGGATAAGGGTAATTTGTGGGGTTATTTGCCTTCTTCAAGTGGTGTTTTG
AGCTATTTCTCAGATTCTGAGGCTACCAACGAGCAAATCAGGAGGCTTGA
AGAGGGCAAGGATGGCAAATTTCGCTTGGTTGGTAAGCCAAAAGCTGAGA
TAGTAGAAGGACAAATGCATCTACGGTCCAGCGCTCATGATGAAGATTAA
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protein sequence of rna3555

>rna3555-protein ID=rna3555-protein|Name=rna3555|organism=Nannochloropsis gaditana|type=polypeptide|length=309bp
MDEDAVFEDGPSIGRFRVTKLKGLNICPAIDENGASASSEEENGYKVKFV
VLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVR
TAEDIMSLIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFC
CDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATY
ITIRFGLEVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAAL
VERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVG
KFLQAHGLL
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mRNA from alignment at CM002461.1:687667..688817+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3555 ID=rna3555|Name=rna3555|organism=Nannochloropsis gaditana|type=mRNA|length=1151bp|location=Sequence derived from alignment at CM002461.1:687667..688817+ (Nannochloropsis gaditana)
ATGGACGAAGACGCAGTATTTGAGGACGGACCGAGTATAGGGCGTTTCCG
GGTAACCAAACTGAAAGGTTTGAATATCTGTCCCGCTATAGATGAAAATG
GTGCCTCAGCCTCatcagaagaagaaaatggttACAAAGTAAAATTCGTA
GTACTGCTTTTTGGATGGTTGACTTGCCAAGATAAGCATCTCAGAAAATA
TGCAGCGCTATATCACGAACACTTTGCTTGCAAAGTAGTGCTACGCTACA
CTGTACCTGCCGGCAATGTCCTCCGTAGAAAGCAATCAGAAGTGGTGCGC
ACAGCGGAGGATATCATGTCTTTGATACCTCTATTTTTTCCTCGAGCCAA
AGTACTTGTGCATTACTTTAGTAATGGAGGTTGCTTTGTTCATCGCAGAT
TGCTACTGCTGCTGAACGGTCACTATAGACAACGGTCGCGACGGTTCTGC
TGTGATAGAAGACCGCCCAATGAGGAGCACTCCTTTTCTCAGCTCGCCGC
AACAATATTTGATAGCTGTCCAGCGGCTGCAGACGCTCAAACTGGTGCTA
AGGCACTCAGCGCAGCCTTGCGGGTGAGTAACCTGAATGTGTATCGTAGG
TAGAGGAATCCATGGACATGGAATGTCTCTGTCGAATAGAATCCGTGGCA
TTCGAATGAGTAATTGTAGGATGTAGTGATTGTCCAAATGTCAAAAATCC
GAAACTGCCCACATGTACTTATGTGTACCCGTAGTATTCTTACCTTCCCG
CGCTTACAACATTTACTCCTGTTGCTCGGCGGCCCCTTCCACAGGCACCC
TTCGCCCGGCTTGCCACCTATATCACCATCCGTTTCGGCCTTGAAGTCTA
TGGACTAGCACAATGCTGGCGATATGAGCGCAAATACTTGGAGCATATAG
AGAACGATCACCTGCTTATTCCTAGCCTTTATATATACTCGGATGATGAC
ACCATCACAGACGCAGCACTGGTTGAAAGGATTGTGACGAAGCGGAAAGC
ATATTTCACATCCCAGGGCATTGTTGCAGATGTCATGGTGAGGACATGGA
AGGTTAGTGAACCATCAAGTCATGTCTGCCACTATGCGCACCACCCAGAT
GCATACAGGGCTGAAGTCGGGAAGTTTCTTCAGGCGCACGGATTATTGTG
A
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Coding sequence (CDS) from alignment at CM002461.1:687667..688817+

>rna3555 ID=rna3555|Name=rna3555|organism=Nannochloropsis gaditana|type=CDS|length=1860bp|location=Sequence derived from alignment at CM002461.1:687667..688817+ (Nannochloropsis gaditana)
ATGGACGAAGACGCAGTATTTGAGGACGGACCGAGTATAGGGCGTTTCCG
GGTAACCAAACTGAAAGGTTTGAATATCTGTCCCGCTATAGATGAAAATG
GTGCCTCAGCCTCatcagaagaagaaaatggttACAAAGTAAAATTCGTA
GTACTGCTTTTTGGATGGTTGACTTGCCAAGATAAGCATCTCAGAAAATA
TGCAGCGCTATATCACGAACACTTTGCTTGCAAAGTAGTGCTACGCTACA
CTGTACCTGCCGGCAATGTCCTCCGTAGAAAGCAATCAGAAGTGGTGCGC
ACAGCGGAGGATATCATGTCTTTGATACCTCTATTTTTTCCTCGAGCCAA
AGTACTTGTGCATTACTTTAGTAATGGAGGTTGCTTTGTTCATCGCAGAT
TGCTACTGCTGCTGAACGGTCACTATAGACAACGGTCGCGACGGTTCTGC
TGTGATAGAAGACCGCCCAATGAGGAGCACTCCTTTTCTCAGCTCGCCGC
AACAATATTTGATAGCTGTCCAGCGGCTGCAGACGCTCAAACTGGTGCTA
AGGCACTCAGCGCAGCCTTGCGGGCACCCTTCGCCCGGCTTGCCACCTAT
ATCACCATCCGTTTCGGCCTTGAAGTCTATGGACTAGCACAATGCTGGCG
ATATGAGCGCAAATACTTGGAGCATATAGAGAACGATCACCTGCTTATTC
CTAGCCTTTATATATACTCGGATGATGACACCATCACAGACGCAGCACTG
GTTGAAAGGATTGTGACGAAGCGGAAAGCATATTTCACATCCCAGGGCAT
TGTTGCAGATGTCATGGTGAGGACATGGAAGGTTAGTGAACCATCAAGTC
ATGTCTGCCACTATGCGCACCACCCAGATGCATACAGGGCTGAAGTCGGG
AAGTTTCTTCAGGCGCACGGATTATTGTGAATGGACGAAGACGCAGTATT
TGAGGACGGACCGAGTATAGGGCGTTTCCGGGTAACCAAACTGAAAGGTT
TGAATATCTGTCCCGCTATAGATGAAAATGGTGCCTCAGCCTCatcagaa
gaagaaaatggttACAAAGTAAAATTCGTAGTACTGCTTTTTGGATGGTT
GACTTGCCAAGATAAGCATCTCAGAAAATATGCAGCGCTATATCACGAAC
ACTTTGCTTGCAAAGTAGTGCTACGCTACACTGTACCTGCCGGCAATGTC
CTCCGTAGAAAGCAATCAGAAGTGGTGCGCACAGCGGAGGATATCATGTC
TTTGATACCTCTATTTTTTCCTCGAGCCAAAGTACTTGTGCATTACTTTA
GTAATGGAGGTTGCTTTGTTCATCGCAGATTGCTACTGCTGCTGAACGGT
CACTATAGACAACGGTCGCGACGGTTCTGCTGTGATAGAAGACCGCCCAA
TGAGGAGCACTCCTTTTCTCAGCTCGCCGCAACAATATTTGATAGCTGTC
CAGCGGCTGCAGACGCTCAAACTGGTGCTAAGGCACTCAGCGCAGCCTTG
CGGGCACCCTTCGCCCGGCTTGCCACCTATATCACCATCCGTTTCGGCCT
TGAAGTCTATGGACTAGCACAATGCTGGCGATATGAGCGCAAATACTTGG
AGCATATAGAGAACGATCACCTGCTTATTCCTAGCCTTTATATATACTCG
GATGATGACACCATCACAGACGCAGCACTGGTTGAAAGGATTGTGACGAA
GCGGAAAGCATATTTCACATCCCAGGGCATTGTTGCAGATGTCATGGTGA
GGACATGGAAGGTTAGTGAACCATCAAGTCATGTCTGCCACTATGCGCAC
CACCCAGATGCATACAGGGCTGAAGTCGGGAAGTTTCTTCAGGCGCACGG
ATTATTGTGA
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Synonyms
Publications