EWM27130.1, cds3546 (CDS) Nannochloropsis gaditana

Overview
NameEWM27130.1
Unique Namecds3546
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:687667..688239 +
Alignment locationCM002461.1:688461..688817 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27130.1
ProductProtein of unknown function DUF829, TMEM53
Orig transcript idgnl|cribi|Naga_100419g1.1243.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:687667..688239 +
CM002461.1supercontigCM002461.1:688461..688817 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008547DUF829_TMEM53
IPR029058AB_hydrolase
Homology
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|585109309|gb|EWM27130.1| (Protein of unknown function DUF829, TMEM53 [Nannochloropsis gaditana])

HSP 1 Score: 643.654 bits (1659), Expect = 0.000e+0
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0
Query:    1 MDEDAVFEDGPSIGRFRVTKLKGLNICPAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQAHGLL 309
            MDEDAVFEDGPSIGRFRVTKLKGLNICPAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQAHGLL
Sbjct:    1 MDEDAVFEDGPSIGRFRVTKLKGLNICPAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQAHGLL 309          
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|525005009|ref|XP_005050193.1| (PREDICTED: transmembrane protein 53 isoform X1 [Ficedula albicollis])

HSP 1 Score: 92.4337 bits (228), Expect = 3.914e-18
Identity = 86/289 (29.76%), Postives = 124/289 (42.91%), Query Frame = 0
Query:   24 LNICPAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRA----KVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLI-----PSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFL 303
            L + PA +    SA +E   G   + VV+L GW  CQDK+L KY+A+Y +   C V+ RYT P   V   +   +         L+ L F  +     VL H FSNGG  ++R +L  L+ H   ++ R                +A TIFDS P   + Q G +AL+  L +  A L  ++   F      L        ++L     D LL      P LY+YS  D I  A+ V+ +   R+           V V+    S+ S HV H   +P  YR+    FL
Sbjct:   13 LQLGPAPE---GSAQTEPAEG---QPVVILLGWAGCQDKYLAKYSAIYSQK-GCTVI-RYTAPWRMVFFSETFGIRSLQTPARHLLELLFDYSIEDRPVLFHVFSNGGAMLYRYILEALHTHKSFKNLR----------------VAGTIFDSAPGRRNLQGGLRALATVLVSMNALLRYFLLFTFASAAVVLRMLLYPLTRFLHQSHYDALLAAPSRWPELYLYSQADLIIQASEVQLMADGRQQL--------GVPVKAVDFSD-SPHVSHMRLYPTYYRSLCTTFL 268          
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|525005011|ref|XP_005050194.1| (PREDICTED: transmembrane protein 53 isoform X2 [Ficedula albicollis])

HSP 1 Score: 91.2781 bits (225), Expect = 7.723e-18
Identity = 83/278 (29.86%), Postives = 119/278 (42.81%), Query Frame = 0
Query:   35 ASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRA----KVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLI-----PSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFL 303
             SA +E   G   + VV+L GW  CQDK+L KY+A+Y +   C V+ RYT P   V   +   +         L+ L F  +     VL H FSNGG  ++R +L  L+ H   ++ R                +A TIFDS P   + Q G +AL+  L +  A L  ++   F      L        ++L     D LL      P LY+YS  D I  A+ V+ +   R+           V V+    S+ S HV H   +P  YR+    FL
Sbjct:   20 GSAQTEPAEG---QPVVILLGWAGCQDKYLAKYSAIYSQK-GCTVI-RYTAPWRMVFFSETFGIRSLQTPARHLLELLFDYSIEDRPVLFHVFSNGGAMLYRYILEALHTHKSFKNLR----------------VAGTIFDSAPGRRNLQGGLRALATVLVSMNALLRYFLLFTFASAAVVLRMLLYPLTRFLHQSHYDALLAAPSRWPELYLYSQADLIIQASEVQLMADGRQQL--------GVPVKAVDFSD-SPHVSHMRLYPTYYRSLCTTFL 267          
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|530627144|ref|XP_005303092.1| (PREDICTED: transmembrane protein 53 isoform X1 [Chrysemys picta bellii])

HSP 1 Score: 90.8929 bits (224), Expect = 1.355e-17
Identity = 79/283 (27.92%), Postives = 122/283 (43.11%), Query Frame = 0
Query:   30 IDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFF----PRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLL-----IPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFL 303
            +   G   +S E      + VV+L GW  C+DKHL KY+ +YH+   C V+ RYT P       +   +         L+ L F     +  +L H FSNGG  ++R +L L++ H     R+F           S  ++  TIFDS P   +     +AL+A L +    L   + + F + V  L        ++      D LL      P LY+YS  D I  A+ VE ++  R+ +        +V VR    S+ S+HV H   +P  Y +    F+
Sbjct:   12 LPPGGRPDTSPEMGNKNNRPVVILLGWAGCRDKHLVKYSTIYHQK-GCTVI-RYTAPWKMTFFAESFGIRSLRTPARKLLELLFDYKIEKKPLLFHVFSNGGVMLYRYILELIHTH-----RQF-----------SSLKVVGTIFDSAPGRRNMVGSLRALAAVLGSTNVLLKYGLLLVFAILVVVLRILLHPVTRFFHETHYDALLNGPSRWPELYLYSKGDRIILASDVEHMIEARRQH--------NVAVRAVDFSD-SAHVSHLLAYPSYYMSLCTSFM 267          
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|1133438007|ref|XP_019875295.1| (PREDICTED: transmembrane protein 53 [Aethina tumida])

HSP 1 Score: 90.8929 bits (224), Expect = 1.400e-17
Identity = 79/265 (29.81%), Postives = 121/265 (45.66%), Query Frame = 0
Query:   50 VVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMS-LIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRA-PFARLATYITIRFGLEV---YGLAQCWRYERK-----YLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQ 304
            V+LLFGW  CQDK+L KY+ +Y +     + LRYT P    L  K+ ++++  E I+  LI L F    ++VH FSNGG F+++   + L             D+ P        Q+   IFDS P      T  +A+S  +       L+  I +   + V   Y +     ++RK       E+++N+    P  +IYS  D +     VE  +  RK    ++G+  DV   T    E S HV H A H D+Y  +V  F+ 
Sbjct:   40 VILLFGWAGCQDKYLAKYSKIYED--KGLITLRYTAPV-KCLFWKRYQMIKIGEKIVKLLIDLNFENHPIIVHCFSNGGAFMYQNFSMAL-------------DKSPKQ-----IQVKGVIFDSAPGKKRVMTLYRAISYIIGGNAIYNLSMSIFMTMFISVIWLYEILTTTLFQRKITHTNLYENLKNEKNAWPQHFIYSKADDLIPHTDVEDFLEHRK----NKGV--DV---TSICYESSLHVKHLAEHRDSYVNQVCNFIN 274          
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|530627146|ref|XP_005303093.1| (PREDICTED: transmembrane protein 53 isoform X2 [Chrysemys picta bellii])

HSP 1 Score: 89.3521 bits (220), Expect = 3.204e-17
Identity = 78/275 (28.36%), Postives = 120/275 (43.64%), Query Frame = 0
Query:   38 SSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFF----PRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLL-----IPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFL 303
            +S E      + VV+L GW  C+DKHL KY+ +YH+   C V+ RYT P       +   +         L+ L F     +  +L H FSNGG  ++R +L L++ H     R+F           S  ++  TIFDS P   +     +AL+A L +    L   + + F + V  L        ++      D LL      P LY+YS  D I  A+ VE ++  R+ +        +V VR    S+ S+HV H   +P  Y +    F+
Sbjct:   10 TSPEMGNKNNRPVVILLGWAGCRDKHLVKYSTIYHQK-GCTVI-RYTAPWKMTFFAESFGIRSLRTPARKLLELLFDYKIEKKPLLFHVFSNGGVMLYRYILELIHTH-----RQF-----------SSLKVVGTIFDSAPGRRNMVGSLRALAAVLGSTNVLLKYGLLLVFAILVVVLRILLHPVTRFFHETHYDALLNGPSRWPELYLYSKGDRIILASDVEHMIEARRQH--------NVAVRAVDFSD-SAHVSHLLAYPSYYMSLCTSFM 257          
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|91084203|ref|XP_967906.1| (PREDICTED: transmembrane protein 53 isoform X1 [Tribolium castaneum] >gi|270008767|gb|EFA05215.1| Transmembrane protein 53-like Protein [Tribolium castaneum])

HSP 1 Score: 88.5817 bits (218), Expect = 8.583e-17
Identity = 76/270 (28.15%), Postives = 116/270 (42.96%), Query Frame = 0
Query:   50 VVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAAL--RAPFARLATYITIRFGLEVYGLAQCWRYE-------------RKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQ 304
            V+LLFGW  CQDK+L KY+ +Y +     + LRYT P   +  ++   +      +  L+ L F    ++VH FSNGG F+++   L L     ++S +               Q+   IFDS P      +  +A+SA L  R  +   A+ +   F      L+  W YE                LE++++D    P  +IYS  D +     +E     RK    S GI  DV    +   E S HV HY  + ++Y + V  FL 
Sbjct:   45 VILLFGWAGCQDKYLAKYSQIYEDRGL--ITLRYTAPVKCLFWKRLQMITIGERLVKLLVDLNFENHPIIVHCFSNGGAFLYQNFTLAL-----EKSPKPI-------------QIKGVIFDSAPGKRRVLSLFRAISAILGGRPLYNIPASVLMTMF------LSMIWLYEVVSNYISPKKTFQSNPLENLKDDKNNCPQHFIYSKKDILIPYTDIEYFANYRK----SLGI--DVTTLCY---ETSPHVKHYTENKESYVSSVCNFLN 279          
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|444721418|gb|ELW62155.1| (Transmembrane protein 53 [Tupaia chinensis])

HSP 1 Score: 86.6557 bits (213), Expect = 3.583e-16
Identity = 81/295 (27.46%), Postives = 132/295 (44.75%), Query Frame = 0
Query:   26 ICPAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFF----PRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAAL--RAPFARLA-----TYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQA--HG 307
            + P ++E   S   +E   ++   VV+L GW  C+DK+L KY+A+YH+   C +V+RYT P   V   +   +         L+ L F     +  +L H FSN G  ++R +L LL  H     +RFC              +  TIFDS P  ++     +AL+  L  R+   RL+       + + F + +  L     +   + + +++     P LY+YS  D +  A  VER+V  R A+         V VR+      S+HV H   +P  Y +    F+++  HG
Sbjct:    6 LTPGLEETSPSQGGKEAEAWQP--VVILLGWGGCRDKYLAKYSAIYHKR-GC-IVIRYTAPWHMVFFAESLGIPSLRVLAQKLLELLFDYEIEKEPLLFHVFSNAGVMLYRYVLELLQTH-----QRFC-----------HLHVVGTIFDSGPGDSNLLGALRALATILEHRSTVLRLSLLMAFALVAVLFHVLLAPLTAL--FHTHFYDRLQDASSRWPELYLYSRADEVVLARDVERMVEARLAH--------QVRVRSVDFMS-SAHVSHLRDYPTYYTSLCVNFMRSCLHG 269          
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|984098781|ref|XP_015340585.1| (PREDICTED: transmembrane protein 53 isoform X1 [Marmota marmota marmota])

HSP 1 Score: 87.0409 bits (214), Expect = 3.670e-16
Identity = 82/287 (28.57%), Postives = 126/287 (43.90%), Query Frame = 0
Query:   28 PAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFF----PRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGL-----EVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQA 305
            P   +   +    +E G ++  VV+L GW  C+DK+L KY+A+YHE   C +V+RYT P   V   +   +         L+ L F     R  +L H FSN G  ++R +L LL  H     RRFC  R           +  TIFDS P   +     +AL+  L    A +   + + F L      +        +  ++ + ++N     P LY+YS  D I  A  VER+V  R A+         V+VR+      S+HV H   +P  Y +    F+++
Sbjct:   16 PCWSQKNNTRQGGKEAGPRLP-VVILLGWGGCRDKNLAKYSAIYHER-GC-IVIRYTAPWHMVFFSESLGIPSLRLLAQKLLELLFDYEIEREPLLFHVFSNAGVMLYRYVLELLQTH-----RRFCHLR-----------VVGTIFDSGPGDNNLVGALRALAVILEHQHALMRLLLLVAFTLVAVLFHILLAPLTGLFHTRFYDKLQNAESHWPELYLYSKADEIVLARDVERMVEARLAH--------RVLVRSVDFVS-SAHVSHLRDYPTYYTSLCVDFMRS 274          
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|829822537|ref|XP_012631412.1| (transmembrane protein 53 isoform X2 [Microcebus murinus])

HSP 1 Score: 86.6557 bits (213), Expect = 4.835e-16
Identity = 80/287 (27.87%), Postives = 128/287 (44.60%), Query Frame = 0
Query:   28 PAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFF----PRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGL-----EVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQA 305
            P   +  + +   +E G + + VV+L GW  C+DK+L KY+A+YH+   C +V+RYT P   V   +   +         L+ L F     +  +L H FSN G  ++R +L LL  H     +RFC  R           +  TIFDS P  ++     +AL+A L    A L   + + F L      V        +   + + +++     P LY+YS  D +  A  VER+V  R A+         V+VR+      S+HV H   +P  Y +    F+++
Sbjct:   16 PCWSQKNSLSQGGKEAGTR-QPVVILLGWGGCRDKYLAKYSAIYHKR-GC-IVIRYTAPWHMVFFSESLGIPSLRVLAQKLLELLFDYEIEKEPLLFHVFSNAGVMLYRYVLELLQTH-----QRFCHLR-----------VVGTIFDSGPGDSNLVGALRALAAVLEHRPAILRLSLLVAFALVAVLFHVLLAPLTALFHTHFYDRLQDAGSRWPELYLYSRADEVVLARDVERMVEARLAH--------QVLVRSVDFVS-SAHVSHLRDYPTYYTSLCVNFMRS 274          
The following BLAST results are available for this feature:
BLAST of EWM27130.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109309|gb|EWM27130.1|0.000e+0100.00Protein of unknown function DUF829, TMEM53 [Nannoc... [more]
gi|525005009|ref|XP_005050193.1|3.914e-1829.76PREDICTED: transmembrane protein 53 isoform X1 [Fi... [more]
gi|525005011|ref|XP_005050194.1|7.723e-1829.86PREDICTED: transmembrane protein 53 isoform X2 [Fi... [more]
gi|530627144|ref|XP_005303092.1|1.355e-1727.92PREDICTED: transmembrane protein 53 isoform X1 [Ch... [more]
gi|1133438007|ref|XP_019875295.1|1.400e-1729.81PREDICTED: transmembrane protein 53 [Aethina tumid... [more]
gi|530627146|ref|XP_005303093.1|3.204e-1728.36PREDICTED: transmembrane protein 53 isoform X2 [Ch... [more]
gi|91084203|ref|XP_967906.1|8.583e-1728.15PREDICTED: transmembrane protein 53 isoform X1 [Tr... [more]
gi|444721418|gb|ELW62155.1|3.583e-1627.46Transmembrane protein 53 [Tupaia chinensis][more]
gi|984098781|ref|XP_015340585.1|3.670e-1628.57PREDICTED: transmembrane protein 53 isoform X1 [Ma... [more]
gi|829822537|ref|XP_012631412.1|4.835e-1627.87transmembrane protein 53 isoform X2 [Microcebus mu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3555rna3555Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications