EWM27130.1, cds3546 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|585109309|gb|EWM27130.1| (Protein of unknown function DUF829, TMEM53 [Nannochloropsis gaditana]) HSP 1 Score: 643.654 bits (1659), Expect = 0.000e+0 Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0
Query: 1 MDEDAVFEDGPSIGRFRVTKLKGLNICPAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQAHGLL 309
MDEDAVFEDGPSIGRFRVTKLKGLNICPAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQAHGLL
Sbjct: 1 MDEDAVFEDGPSIGRFRVTKLKGLNICPAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQAHGLL 309
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|525005009|ref|XP_005050193.1| (PREDICTED: transmembrane protein 53 isoform X1 [Ficedula albicollis]) HSP 1 Score: 92.4337 bits (228), Expect = 3.914e-18 Identity = 86/289 (29.76%), Postives = 124/289 (42.91%), Query Frame = 0
Query: 24 LNICPAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRA----KVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLI-----PSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFL 303
L + PA + SA +E G + VV+L GW CQDK+L KY+A+Y + C V+ RYT P V + + L+ L F + VL H FSNGG ++R +L L+ H ++ R +A TIFDS P + Q G +AL+ L + A L ++ F L ++L D LL P LY+YS D I A+ V+ + R+ V V+ S+ S HV H +P YR+ FL
Sbjct: 13 LQLGPAPE---GSAQTEPAEG---QPVVILLGWAGCQDKYLAKYSAIYSQK-GCTVI-RYTAPWRMVFFSETFGIRSLQTPARHLLELLFDYSIEDRPVLFHVFSNGGAMLYRYILEALHTHKSFKNLR----------------VAGTIFDSAPGRRNLQGGLRALATVLVSMNALLRYFLLFTFASAAVVLRMLLYPLTRFLHQSHYDALLAAPSRWPELYLYSQADLIIQASEVQLMADGRQQL--------GVPVKAVDFSD-SPHVSHMRLYPTYYRSLCTTFL 268
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|525005011|ref|XP_005050194.1| (PREDICTED: transmembrane protein 53 isoform X2 [Ficedula albicollis]) HSP 1 Score: 91.2781 bits (225), Expect = 7.723e-18 Identity = 83/278 (29.86%), Postives = 119/278 (42.81%), Query Frame = 0
Query: 35 ASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRA----KVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLI-----PSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFL 303
SA +E G + VV+L GW CQDK+L KY+A+Y + C V+ RYT P V + + L+ L F + VL H FSNGG ++R +L L+ H ++ R +A TIFDS P + Q G +AL+ L + A L ++ F L ++L D LL P LY+YS D I A+ V+ + R+ V V+ S+ S HV H +P YR+ FL
Sbjct: 20 GSAQTEPAEG---QPVVILLGWAGCQDKYLAKYSAIYSQK-GCTVI-RYTAPWRMVFFSETFGIRSLQTPARHLLELLFDYSIEDRPVLFHVFSNGGAMLYRYILEALHTHKSFKNLR----------------VAGTIFDSAPGRRNLQGGLRALATVLVSMNALLRYFLLFTFASAAVVLRMLLYPLTRFLHQSHYDALLAAPSRWPELYLYSQADLIIQASEVQLMADGRQQL--------GVPVKAVDFSD-SPHVSHMRLYPTYYRSLCTTFL 267
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|530627144|ref|XP_005303092.1| (PREDICTED: transmembrane protein 53 isoform X1 [Chrysemys picta bellii]) HSP 1 Score: 90.8929 bits (224), Expect = 1.355e-17 Identity = 79/283 (27.92%), Postives = 122/283 (43.11%), Query Frame = 0
Query: 30 IDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFF----PRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLL-----IPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFL 303
+ G +S E + VV+L GW C+DKHL KY+ +YH+ C V+ RYT P + + L+ L F + +L H FSNGG ++R +L L++ H R+F S ++ TIFDS P + +AL+A L + L + + F + V L ++ D LL P LY+YS D I A+ VE ++ R+ + +V VR S+ S+HV H +P Y + F+
Sbjct: 12 LPPGGRPDTSPEMGNKNNRPVVILLGWAGCRDKHLVKYSTIYHQK-GCTVI-RYTAPWKMTFFAESFGIRSLRTPARKLLELLFDYKIEKKPLLFHVFSNGGVMLYRYILELIHTH-----RQF-----------SSLKVVGTIFDSAPGRRNMVGSLRALAAVLGSTNVLLKYGLLLVFAILVVVLRILLHPVTRFFHETHYDALLNGPSRWPELYLYSKGDRIILASDVEHMIEARRQH--------NVAVRAVDFSD-SAHVSHLLAYPSYYMSLCTSFM 267
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|1133438007|ref|XP_019875295.1| (PREDICTED: transmembrane protein 53 [Aethina tumida]) HSP 1 Score: 90.8929 bits (224), Expect = 1.400e-17 Identity = 79/265 (29.81%), Postives = 121/265 (45.66%), Query Frame = 0
Query: 50 VVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMS-LIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRA-PFARLATYITIRFGLEV---YGLAQCWRYERK-----YLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQ 304
V+LLFGW CQDK+L KY+ +Y + + LRYT P L K+ ++++ E I+ LI L F ++VH FSNGG F+++ + L D+ P Q+ IFDS P T +A+S + L+ I + + V Y + ++RK E+++N+ P +IYS D + VE + RK ++G+ DV T E S HV H A H D+Y +V F+
Sbjct: 40 VILLFGWAGCQDKYLAKYSKIYED--KGLITLRYTAPV-KCLFWKRYQMIKIGEKIVKLLIDLNFENHPIIVHCFSNGGAFMYQNFSMAL-------------DKSPKQ-----IQVKGVIFDSAPGKKRVMTLYRAISYIIGGNAIYNLSMSIFMTMFISVIWLYEILTTTLFQRKITHTNLYENLKNEKNAWPQHFIYSKADDLIPHTDVEDFLEHRK----NKGV--DV---TSICYESSLHVKHLAEHRDSYVNQVCNFIN 274
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|530627146|ref|XP_005303093.1| (PREDICTED: transmembrane protein 53 isoform X2 [Chrysemys picta bellii]) HSP 1 Score: 89.3521 bits (220), Expect = 3.204e-17 Identity = 78/275 (28.36%), Postives = 120/275 (43.64%), Query Frame = 0
Query: 38 SSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFF----PRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLL-----IPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFL 303
+S E + VV+L GW C+DKHL KY+ +YH+ C V+ RYT P + + L+ L F + +L H FSNGG ++R +L L++ H R+F S ++ TIFDS P + +AL+A L + L + + F + V L ++ D LL P LY+YS D I A+ VE ++ R+ + +V VR S+ S+HV H +P Y + F+
Sbjct: 10 TSPEMGNKNNRPVVILLGWAGCRDKHLVKYSTIYHQK-GCTVI-RYTAPWKMTFFAESFGIRSLRTPARKLLELLFDYKIEKKPLLFHVFSNGGVMLYRYILELIHTH-----RQF-----------SSLKVVGTIFDSAPGRRNMVGSLRALAAVLGSTNVLLKYGLLLVFAILVVVLRILLHPVTRFFHETHYDALLNGPSRWPELYLYSKGDRIILASDVEHMIEARRQH--------NVAVRAVDFSD-SAHVSHLLAYPSYYMSLCTSFM 257
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|91084203|ref|XP_967906.1| (PREDICTED: transmembrane protein 53 isoform X1 [Tribolium castaneum] >gi|270008767|gb|EFA05215.1| Transmembrane protein 53-like Protein [Tribolium castaneum]) HSP 1 Score: 88.5817 bits (218), Expect = 8.583e-17 Identity = 76/270 (28.15%), Postives = 116/270 (42.96%), Query Frame = 0
Query: 50 VVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAAL--RAPFARLATYITIRFGLEVYGLAQCWRYE-------------RKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQ 304
V+LLFGW CQDK+L KY+ +Y + + LRYT P + ++ + + L+ L F ++VH FSNGG F+++ L L ++S + Q+ IFDS P + +A+SA L R + A+ + F L+ W YE LE++++D P +IYS D + +E RK S GI DV + E S HV HY + ++Y + V FL
Sbjct: 45 VILLFGWAGCQDKYLAKYSQIYEDRGL--ITLRYTAPVKCLFWKRLQMITIGERLVKLLVDLNFENHPIIVHCFSNGGAFLYQNFTLAL-----EKSPKPI-------------QIKGVIFDSAPGKRRVLSLFRAISAILGGRPLYNIPASVLMTMF------LSMIWLYEVVSNYISPKKTFQSNPLENLKDDKNNCPQHFIYSKKDILIPYTDIEYFANYRK----SLGI--DVTTLCY---ETSPHVKHYTENKESYVSSVCNFLN 279
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|444721418|gb|ELW62155.1| (Transmembrane protein 53 [Tupaia chinensis]) HSP 1 Score: 86.6557 bits (213), Expect = 3.583e-16 Identity = 81/295 (27.46%), Postives = 132/295 (44.75%), Query Frame = 0
Query: 26 ICPAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFF----PRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAAL--RAPFARLA-----TYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQA--HG 307
+ P ++E S +E ++ VV+L GW C+DK+L KY+A+YH+ C +V+RYT P V + + L+ L F + +L H FSN G ++R +L LL H +RFC + TIFDS P ++ +AL+ L R+ RL+ + + F + + L + + + +++ P LY+YS D + A VER+V R A+ V VR+ S+HV H +P Y + F+++ HG
Sbjct: 6 LTPGLEETSPSQGGKEAEAWQP--VVILLGWGGCRDKYLAKYSAIYHKR-GC-IVIRYTAPWHMVFFAESLGIPSLRVLAQKLLELLFDYEIEKEPLLFHVFSNAGVMLYRYVLELLQTH-----QRFC-----------HLHVVGTIFDSGPGDSNLLGALRALATILEHRSTVLRLSLLMAFALVAVLFHVLLAPLTAL--FHTHFYDRLQDASSRWPELYLYSRADEVVLARDVERMVEARLAH--------QVRVRSVDFMS-SAHVSHLRDYPTYYTSLCVNFMRSCLHG 269
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|984098781|ref|XP_015340585.1| (PREDICTED: transmembrane protein 53 isoform X1 [Marmota marmota marmota]) HSP 1 Score: 87.0409 bits (214), Expect = 3.670e-16 Identity = 82/287 (28.57%), Postives = 126/287 (43.90%), Query Frame = 0
Query: 28 PAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFF----PRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGL-----EVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQA 305
P + + +E G ++ VV+L GW C+DK+L KY+A+YHE C +V+RYT P V + + L+ L F R +L H FSN G ++R +L LL H RRFC R + TIFDS P + +AL+ L A + + + F L + + ++ + ++N P LY+YS D I A VER+V R A+ V+VR+ S+HV H +P Y + F+++
Sbjct: 16 PCWSQKNNTRQGGKEAGPRLP-VVILLGWGGCRDKNLAKYSAIYHER-GC-IVIRYTAPWHMVFFSESLGIPSLRLLAQKLLELLFDYEIEREPLLFHVFSNAGVMLYRYVLELLQTH-----RRFCHLR-----------VVGTIFDSGPGDNNLVGALRALAVILEHQHALMRLLLLVAFTLVAVLFHILLAPLTGLFHTRFYDKLQNAESHWPELYLYSKADEIVLARDVERMVEARLAH--------RVLVRSVDFVS-SAHVSHLRDYPTYYTSLCVDFMRS 274
BLAST of EWM27130.1 vs. NCBI_GenBank
Match: gi|829822537|ref|XP_012631412.1| (transmembrane protein 53 isoform X2 [Microcebus murinus]) HSP 1 Score: 86.6557 bits (213), Expect = 4.835e-16 Identity = 80/287 (27.87%), Postives = 128/287 (44.60%), Query Frame = 0
Query: 28 PAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFF----PRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQRSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGL-----EVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQA 305
P + + + +E G + + VV+L GW C+DK+L KY+A+YH+ C +V+RYT P V + + L+ L F + +L H FSN G ++R +L LL H +RFC R + TIFDS P ++ +AL+A L A L + + F L V + + + +++ P LY+YS D + A VER+V R A+ V+VR+ S+HV H +P Y + F+++
Sbjct: 16 PCWSQKNSLSQGGKEAGTR-QPVVILLGWGGCRDKYLAKYSAIYHKR-GC-IVIRYTAPWHMVFFSESLGIPSLRVLAQKLLELLFDYEIEKEPLLFHVFSNAGVMLYRYVLELLQTH-----QRFCHLR-----------VVGTIFDSGPGDSNLVGALRALAAVLEHRPAILRLSLLVAFALVAVLFHVLLAPLTALFHTHFYDRLQDAGSRWPELYLYSRADEVVLARDVERMVEARLAH--------QVLVRSVDFVS-SAHVSHLRDYPTYYTSLCVNFMRS 274 The following BLAST results are available for this feature:
BLAST of EWM27130.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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