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Properties
| Property Name | Value |
|---|
| Product | small nuclear ribonucleoprotein associated protein b |
| Orig transcript id | gnl|cribi|Naga_100419g5.1241.mrna |
| Orig protein id | gnl|cribi|Naga_100419g5.1241 |
| Gene | SmB |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:678620..680459 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3551 ID=rna3551|Name=rna3551|organism=Nannochloropsis gaditana|type=mRNA|length=2166bp
AAGCCTCGCGCGTTAGCTCCCATGTCGAAACTACGCTATCGCTAGCTGTC
GCCACAACGCGGTATGTCATTTTCTATTAACAACTCTGCAAATAACCTTT
CTCTAATGCGATGGCAAAGTCTCCTCCGGTTTCATTCACCGACTAGGAGG
AAGGAGGGAAAAGTGGCGAACGCAACTTTCGGGCGATGGTCTGGGCTACG
TAAAGTTCCGCCCTAGCCCCTCGAGTTGGTTTGCCCTGTCCGCATCAAGG
AGGAGAACGTGGAAGAAAGTTAATTGAACTGTTCGTGGTGATCTGTATGG
AGTCTGCCATGGTTTGCTTCCGTTGTGACGAGAAAGCAGGAGCAGGAATG
CGCAGCGTCTCATATAGCAAGCAGCAAGCGAGAGGGCAAGGCGCCCCGCC
CCTTCTTCCGGAAGCAACAAAAAGGGCGCCGGTCATCCATCACGGCAAGC
ATTTCCATGATGTATGAGCTCAACGCTATGTAATTGTGCAAAGGTATACA
TGGCATGTACACAACACTCCGTGCTATGTAGCGGAACGCGGACAGTGGCA
AAAAAGCTCAACGCGCGAGCAGCCTTGCAGGCCCTTTGACCAACCTCCCG
GCCTATGGCGGCTCAGTGGAGGGATCTCTTACTCCTCTTTTCCATGACAA
AAATGTAAAATCGTTACAATAAAAAGTAGAAGATGACTGTATATGTTTAG
GCACGATCCTCTTCCTTATTTCTCTGGACGATCGAGTGGCAGTCCAATTT
CTCGCTCAACCTCCTCCTTCCCGAGGCTCTCAAATTGATATGGGATGGTG
GCATTCAGGGCCAGATCGAAATGGAGACGTGGGTGGAGACGACTTCAAAG
TGATGCAGGGTCTGCAGATGGTCTCTCGAGCAGCGAAGCATTCCAGGTAT
ATCGCGACCTCATCATAACACGCCTCTGCTCACCTGAATGGCCCTTACCC
TCGCCGCCGCGTCGCTTCAGTTTCCTACGGGAGGGCTTCGACGAGACGCA
GCCAGTATTCGTGCTGGCTCCAATGGTACTACAATCCGAGCGGGCGTTTC
GTTTGCTTGTGCAACGTTACGGCGTCACTCTCACCTTTTCTCCAATGCTA
TTGGCTCGCAACGTCCTTTTGAAGCGCAATGAAGACCAGATGGACCCATA
CGTGCTCGAGCTACTGCGGCCGTGTGCTGATGACACGCCCGTTATCGCGC
AGCTTGCGGGGTCAGACCCACTAGAGATGCTGGCGGCGGCGCAACGGCTG
TGGGATGGGGGTCAAATTGCAGGCGTGGACATAAACCTAGGATGCCCGCA
ACAATGCGCCAAAGCCGGGAATTATGGGGCTTACCTTGCGGAGAGGGAGC
CGGAGACGGCCGCGATCATGGTCAGGCTGATTTCGCAAGAGCTGGGGGTG
CCGGTCTCTTGCAAGCTGCGGAACATGTATGACGTGGACACGACCACGCG
ATTGGCGAGGCGACTAGCGGGGGCCGGGGCGTCGATGCTGACGGTGCACG
GGCGCAGCCCCCGCGAGCGCGACCACCAGTCCCTGAGCGACCTGGACGTG
ATCCGGGCCGTGCGCGAGGCGGTTCCTGTCCCCGTCGTCGCCAACGGGAA
CTGCCGCACGCGGGAGGACGCGGAGAGGGCCATGGAGTACACGGGGTGTG
ACGGGTTCATGAGCGCCATAGGCTTGCTGCGCAACCCGCGCCTGTTCGGG
GCGTCGGGCGCTGCGAGGCCGGCGGCATCCCCTGCCGCTGATGCCACCGC
TCCAGCCGTCCCAGGCCACGAGTCTGCCTTGTCGGCGAGTGGCACGCTTG
TGGACCCAGAAGAAGCCTTCTCCTGCGCCTGGGAGTATCTACGGCTGGCA
GAGGCTCACCCACCGCCTGAGGTCCGGTGCGTGCGCGACCATCTCCAGGC
ATTACTGCAGGGTTTGCTACAGCAGGAGAGGGTGGCGCTTTGGAATCTGC
TTGGGAGCTCGCAGATGGTCCTTCTGAGACAATTCAGCGAGTTTCTGCGC
CTGAGTGCTGTCGAATGTGGTGTGGCTTTGCCAGAAGGAGAGAGGTTGGT
GCCTGTGTTGTCGCTGGGAGAGATCAAATCACTGCATCGGCGGGAAATAA
ATGGCCAGGAGGACGAGGAGGACGACTCTTGGGGAATGCTTTTCTTGGAG
GGCAATGAAATGGAGG back to topprotein sequence of rna3551 >rna3551-protein ID=rna3551-protein|Name=rna3551|organism=Nannochloropsis gaditana|type=polypeptide|length=373bp
MISAKRFNIGSVFRFVALNHFKRASQAPSYRFQTMSMSKSSKMLNYINYR
MRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIV
EEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRG
IAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAEASLSRARLSMARPVLG
FQKLEHRPWRPYQFYSPRAMRCLRSSSRADSLIVFDCVNLNGPQVGPALS
APLRASLPVASPLRLPAWVFLLAAPPVWVWPHRRAIPRQAGQAGCLPALR
CRRRARRQACPHGPYRRAEGPLPEGGRADGRGDRKGGRARWGSRLDCEKY
CLGRHGGGKRRTGSRGVRECENY back to topmRNA from alignment at CM002461.1:678620..680459- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3551 ID=rna3551|Name=rna3551|organism=Nannochloropsis gaditana|type=mRNA|length=1840bp|location=Sequence derived from alignment at CM002461.1:678620..680459- (Nannochloropsis gaditana)
ATGATAAGTGCAAAGCGTTTGTTCACGTGTCCAGAGGCTGCTGGGCTTGC
TGGATTGAAGGCGGGGCCGAAGAACTATCCGTACTTATCATCACGCTTCT
CTAACTCTGTGAAATCCCCGGTCTAAACAGTAACATTGGCAGCGTTTTTC
GATTTGTAGCATTAAATCACTTCAAGAGGGCCTCACAGGCTCCTTCATAT
AGATTTCAGACCATGGTAAGTTTGCTGATAGCTCTCGTGTGGGCGCATGC
AGTGTACTGGTAGTATCAGCTCCCTTTGTCTGCTCGTTGCGTCGCAATTT
AGGACCACACACTTCGATTAGTCCTGCAAGGTTGATGCTCTTCGTCCTAA
TACGGAATAAGAATGGTCTTCATAGATCTTCAAGCCCGTATGCTGTCTTA
ATCCGTCCATCCTTTGCCCAAAACCTTCCACTTCTCATCTAATTCTTCCC
ATCTTCGCTCCTCTTCTCATCTTTGTCCTTCAGTCGATGTCCAAAAGCAG
CAAGATGTTGAACTACATCAATTACCGGATGAGAGTGACTATTCAGGACA
ATCGTACACTCGTGGGCACCTTCATGGCTTTCGACCGGCACATGAATCTG
GTGTTAGGTGACTGCGAAGAGTATCGGAAAGTAAAAAACAAGAAAGGAAG
TGGAGGAAGCGGCCCTACCGCGATTGTGGAGGAAAAGGAGGAAAAGCGCA
TGCTGGGGCTTGTCCTCCTTCGCGGAGAGAATGTGGTGTCCCTGACGGTG
GAAGGTCCGCCGCCCCCCGATGAAGAGGCGAAAGCCACGCCGGGGGGCCC
GGGCATGGGCCGGGCGGCAGGCAGGGGCATCGCCGTGGGAGCCCCAGTGA
TGGGAGCACCTGTAGGGCTGGCGGGGCCTGTCCGTGGAGTGGGAGGCCCC
GCGCAATCGCTGATGACTCCTGCGGCAGGTGCGTGGATGGGGTTTGGGGG
TTCCTCCTGGTAGGGTAGAAGAGGGCCGGGAGCTTGAGCCACGGGGCTCG
GGGAGGGTCGCACTCGCAAGATGCAACCGCTGGTTCTGTACGTGTTCTAA
GTCTGAGGTGGAATCTCTGTATCGATGTGGTATCAAGTGGCCGAGGAAGA
AGAGATGCTCGAGAGAGGGTATGGGTCCTTACAGAGGCCTCTCTGAGCAG
GGCGAGACTTTCGATGGCGCGTCCGGTGCTCGGCTTCCAAAAGCTTGAGC
ACCGTCCATGGAGGCCCTATCAGTTCTACTCGCCCAGAGCAATGCGTTGC
CTACGCTCGTCTTCACGCGCGGACTCATTGATCGTGTTCGATTGCGTTAA
TCTGAACGGGCCACAGGTTGGGCCGGCTCTGGTCTGCAGGCATTGTGTTT
TGGACTGCCTTTGTTCCCTGATATTAGAACGGTCTCGGCTCCAGCACCCA
TTCTTATTTTCTTAGCTTACGTCGCTCCTCCCCTTCCCTCTTTTCCTTCC
CAACCGCCCGCCCAGTCGGCGCCCCTCAGGGCTTCCCTCCCCGTGGCCTC
CCCCCTCCGGCTCCCGGCATGGGTTTTCCTCCTCGCGGCGCCCCCGGTAT
GGGTATGGCCGCACCGCCGGGCTATCCCCCGGCAGGCGGGCCAGGCGGGT
TGCCTCCCGGCCCTCCGATGCCGCCGCCGGGCCCGCCGCCAGGCATGCCC
CCACGGGCCTTACCGCCGCGCTGAGGGGCCTCTCCCCGAGGGCGGGAGGG
CGGATGGAAGGGGCGACAGGAAGGGGGGGAGGGCTAGATGGGGAAGCAGA
CTTGATTGTGAGAAGTATTGTCTCGGAAGGCACGGCGGAGGAAAGAGAAG
GACGGGCTCTCGCGGCGTACGCGAGTGCGAAAACTATTAA back to topCoding sequence (CDS) from alignment at CM002461.1:678620..680459- >rna3551 ID=rna3551|Name=rna3551|organism=Nannochloropsis gaditana|type=CDS|length=5610bp|location=Sequence derived from alignment at CM002461.1:678620..680459- (Nannochloropsis gaditana)
TCGGCGCCCCTCAGGGCTTCCCTCCCCGTGGCCTCCCCCCTCCGGCTCCC
GGCATGGGTTTTCCTCCTCGCGGCGCCCCCGGTATGGGTATGGCCGCACC
GCCGGGCTATCCCCCGGCAGGCGGGCCAGGCGGGTTGCCTCCCGGCCCTC
CGATGCCGCCGCCGGGCCCGCCGCCAGGCATGCCCCCACGGGCCTTACCG
CCGCGCTGAGGGGCCTCTCCCCGAGGGCGGGAGGGCGGATGGAAGGGGCG
ACAGGAAGGGGGGGAGGGCTAGATGGGGAAGCAGACTTGATTGTGAGAAG
TATTGTCTCGGAAGGCACGGCGGAGGAAAGAGAAGGACGGGCTCTCGCGG
CGTACGCGAGTGCGAAAACTATTAAAGGCCTCTCTGAGCAGGGCGAGACT
TTCGATGGCGCGTCCGGTGCTCGGCTTCCAAAAGCTTGAGCACCGTCCAT
GGAGGCCCTATCAGTTCTACTCGCCCAGAGCAATGCGTTGCCTACGCTCG
TCTTCACGCGCGGACTCATTGATCGTGTTCGATTGCGTTAATCTGAACGG
GCCACAGGTTGGGCCGGCTCTGTCGATGTCCAAAAGCAGCAAGATGTTGA
ACTACATCAATTACCGGATGAGAGTGACTATTCAGGACAATCGTACACTC
GTGGGCACCTTCATGGCTTTCGACCGGCACATGAATCTGGTGTTAGGTGA
CTGCGAAGAGTATCGGAAAGTAAAAAACAAGAAAGGAAGTGGAGGAAGCG
GCCCTACCGCGATTGTGGAGGAAAAGGAGGAAAAGCGCATGCTGGGGCTT
GTCCTCCTTCGCGGAGAGAATGTGGTGTCCCTGACGGTGGAAGGTCCGCC
GCCCCCCGATGAAGAGGCGAAAGCCACGCCGGGGGGCCCGGGCATGGGCC
GGGCGGCAGGCAGGGGCATCGCCGTGGGAGCCCCAGTGATGGGAGCACCT
GTAGGGCTGGCGGGGCCTGTCCGTGGAGTGGGAGGCCCCGCGCAATCGCT
GATGACTCCTGCGGCAGTAACATTGGCAGCGTTTTTCGATTTGTAGCATT
AAATCACTTCAAGAGGGCCTCACAGGCTCCTTCATATAGATTTCAGACCA
TGATGATAAGTGCAAAGCGTTTTCGGCGCCCCTCAGGGCTTCCCTCCCCG
TGGCCTCCCCCCTCCGGCTCCCGGCATGGGTTTTCCTCCTCGCGGCGCCC
CCGGTATGGGTATGGCCGCACCGCCGGGCTATCCCCCGGCAGGCGGGCCA
GGCGGGTTGCCTCCCGGCCCTCCGATGCCGCCGCCGGGCCCGCCGCCAGG
CATGCCCCCACGGGCCTTACCGCCGCGCTGAGGGGCCTCTCCCCGAGGGC
GGGAGGGCGGATGGAAGGGGCGACAGGAAGGGGGGGAGGGCTAGATGGGG
AAGCAGACTTGATTGTGAGAAGTATTGTCTCGGAAGGCACGGCGGAGGAA
AGAGAAGGACGGGCTCTCGCGGCGTACGCGAGTGCGAAAACTATTAAAGG
CCTCTCTGAGCAGGGCGAGACTTTCGATGGCGCGTCCGGTGCTCGGCTTC
CAAAAGCTTGAGCACCGTCCATGGAGGCCCTATCAGTTCTACTCGCCCAG
AGCAATGCGTTGCCTACGCTCGTCTTCACGCGCGGACTCATTGATCGTGT
TCGATTGCGTTAATCTGAACGGGCCACAGGTTGGGCCGGCTCTGTCGATG
TCCAAAAGCAGCAAGATGTTGAACTACATCAATTACCGGATGAGAGTGAC
TATTCAGGACAATCGTACACTCGTGGGCACCTTCATGGCTTTCGACCGGC
ACATGAATCTGGTGTTAGGTGACTGCGAAGAGTATCGGAAAGTAAAAAAC
AAGAAAGGAAGTGGAGGAAGCGGCCCTACCGCGATTGTGGAGGAAAAGGA
GGAAAAGCGCATGCTGGGGCTTGTCCTCCTTCGCGGAGAGAATGTGGTGT
CCCTGACGGTGGAAGGTCCGCCGCCCCCCGATGAAGAGGCGAAAGCCACG
CCGGGGGGCCCGGGCATGGGCCGGGCGGCAGGCAGGGGCATCGCCGTGGG
AGCCCCAGTGATGGGAGCACCTGTAGGGCTGGCGGGGCCTGTCCGTGGAG
TGGGAGGCCCCGCGCAATCGCTGATGACTCCTGCGGCAGTAACATTGGCA
GCGTTTTTCGATTTGTAGCATTAAATCACTTCAAGAGGGCCTCACAGGCT
CCTTCATATAGATTTCAGACCATGATGATAAGTGCAAAGCGTTTTCGGCG
CCCCTCAGGGCTTCCCTCCCCGTGGCCTCCCCCCTCCGGCTCCCGGCATG
GGTTTTCCTCCTCGCGGCGCCCCCGGTATGGGTATGGCCGCACCGCCGGG
CTATCCCCCGGCAGGCGGGCCAGGCGGGTTGCCTCCCGGCCCTCCGATGC
CGCCGCCGGGCCCGCCGCCAGGCATGCCCCCACGGGCCTTACCGCCGCGC
TGAGGGGCCTCTCCCCGAGGGCGGGAGGGCGGATGGAAGGGGCGACAGGA
AGGGGGGGAGGGCTAGATGGGGAAGCAGACTTGATTGTGAGAAGTATTGT
CTCGGAAGGCACGGCGGAGGAAAGAGAAGGACGGGCTCTCGCGGCGTACG
CGAGTGCGAAAACTATTAAAGGCCTCTCTGAGCAGGGCGAGACTTTCGAT
GGCGCGTCCGGTGCTCGGCTTCCAAAAGCTTGAGCACCGTCCATGGAGGC
CCTATCAGTTCTACTCGCCCAGAGCAATGCGTTGCCTACGCTCGTCTTCA
CGCGCGGACTCATTGATCGTGTTCGATTGCGTTAATCTGAACGGGCCACA
GGTTGGGCCGGCTCTGTCGATGTCCAAAAGCAGCAAGATGTTGAACTACA
TCAATTACCGGATGAGAGTGACTATTCAGGACAATCGTACACTCGTGGGC
ACCTTCATGGCTTTCGACCGGCACATGAATCTGGTGTTAGGTGACTGCGA
AGAGTATCGGAAAGTAAAAAACAAGAAAGGAAGTGGAGGAAGCGGCCCTA
CCGCGATTGTGGAGGAAAAGGAGGAAAAGCGCATGCTGGGGCTTGTCCTC
CTTCGCGGAGAGAATGTGGTGTCCCTGACGGTGGAAGGTCCGCCGCCCCC
CGATGAAGAGGCGAAAGCCACGCCGGGGGGCCCGGGCATGGGCCGGGCGG
CAGGCAGGGGCATCGCCGTGGGAGCCCCAGTGATGGGAGCACCTGTAGGG
CTGGCGGGGCCTGTCCGTGGAGTGGGAGGCCCCGCGCAATCGCTGATGAC
TCCTGCGGCAGTAACATTGGCAGCGTTTTTCGATTTGTAGCATTAAATCA
CTTCAAGAGGGCCTCACAGGCTCCTTCATATAGATTTCAGACCATGATGA
TAAGTGCAAAGCGTTTTCGGCGCCCCTCAGGGCTTCCCTCCCCGTGGCCT
CCCCCCTCCGGCTCCCGGCATGGGTTTTCCTCCTCGCGGCGCCCCCGGTA
TGGGTATGGCCGCACCGCCGGGCTATCCCCCGGCAGGCGGGCCAGGCGGG
TTGCCTCCCGGCCCTCCGATGCCGCCGCCGGGCCCGCCGCCAGGCATGCC
CCCACGGGCCTTACCGCCGCGCTGAGGGGCCTCTCCCCGAGGGCGGGAGG
GCGGATGGAAGGGGCGACAGGAAGGGGGGGAGGGCTAGATGGGGAAGCAG
ACTTGATTGTGAGAAGTATTGTCTCGGAAGGCACGGCGGAGGAAAGAGAA
GGACGGGCTCTCGCGGCGTACGCGAGTGCGAAAACTATTAAAGGCCTCTC
TGAGCAGGGCGAGACTTTCGATGGCGCGTCCGGTGCTCGGCTTCCAAAAG
CTTGAGCACCGTCCATGGAGGCCCTATCAGTTCTACTCGCCCAGAGCAAT
GCGTTGCCTACGCTCGTCTTCACGCGCGGACTCATTGATCGTGTTCGATT
GCGTTAATCTGAACGGGCCACAGGTTGGGCCGGCTCTGTCGATGTCCAAA
AGCAGCAAGATGTTGAACTACATCAATTACCGGATGAGAGTGACTATTCA
GGACAATCGTACACTCGTGGGCACCTTCATGGCTTTCGACCGGCACATGA
ATCTGGTGTTAGGTGACTGCGAAGAGTATCGGAAAGTAAAAAACAAGAAA
GGAAGTGGAGGAAGCGGCCCTACCGCGATTGTGGAGGAAAAGGAGGAAAA
GCGCATGCTGGGGCTTGTCCTCCTTCGCGGAGAGAATGTGGTGTCCCTGA
CGGTGGAAGGTCCGCCGCCCCCCGATGAAGAGGCGAAAGCCACGCCGGGG
GGCCCGGGCATGGGCCGGGCGGCAGGCAGGGGCATCGCCGTGGGAGCCCC
AGTGATGGGAGCACCTGTAGGGCTGGCGGGGCCTGTCCGTGGAGTGGGAG
GCCCCGCGCAATCGCTGATGACTCCTGCGGCAGTAACATTGGCAGCGTTT
TTCGATTTGTAGCATTAAATCACTTCAAGAGGGCCTCACAGGCTCCTTCA
TATAGATTTCAGACCATGATGATAAGTGCAAAGCGTTTTCGGCGCCCCTC
AGGGCTTCCCTCCCCGTGGCCTCCCCCCTCCGGCTCCCGGCATGGGTTTT
CCTCCTCGCGGCGCCCCCGGTATGGGTATGGCCGCACCGCCGGGCTATCC
CCCGGCAGGCGGGCCAGGCGGGTTGCCTCCCGGCCCTCCGATGCCGCCGC
CGGGCCCGCCGCCAGGCATGCCCCCACGGGCCTTACCGCCGCGCTGAGGG
GCCTCTCCCCGAGGGCGGGAGGGCGGATGGAAGGGGCGACAGGAAGGGGG
GGAGGGCTAGATGGGGAAGCAGACTTGATTGTGAGAAGTATTGTCTCGGA
AGGCACGGCGGAGGAAAGAGAAGGACGGGCTCTCGCGGCGTACGCGAGTG
CGAAAACTATTAAAGGCCTCTCTGAGCAGGGCGAGACTTTCGATGGCGCG
TCCGGTGCTCGGCTTCCAAAAGCTTGAGCACCGTCCATGGAGGCCCTATC
AGTTCTACTCGCCCAGAGCAATGCGTTGCCTACGCTCGTCTTCACGCGCG
GACTCATTGATCGTGTTCGATTGCGTTAATCTGAACGGGCCACAGGTTGG
GCCGGCTCTGTCGATGTCCAAAAGCAGCAAGATGTTGAACTACATCAATT
ACCGGATGAGAGTGACTATTCAGGACAATCGTACACTCGTGGGCACCTTC
ATGGCTTTCGACCGGCACATGAATCTGGTGTTAGGTGACTGCGAAGAGTA
TCGGAAAGTAAAAAACAAGAAAGGAAGTGGAGGAAGCGGCCCTACCGCGA
TTGTGGAGGAAAAGGAGGAAAAGCGCATGCTGGGGCTTGTCCTCCTTCGC
GGAGAGAATGTGGTGTCCCTGACGGTGGAAGGTCCGCCGCCCCCCGATGA
AGAGGCGAAAGCCACGCCGGGGGGCCCGGGCATGGGCCGGGCGGCAGGCA
GGGGCATCGCCGTGGGAGCCCCAGTGATGGGAGCACCTGTAGGGCTGGCG
GGGCCTGTCCGTGGAGTGGGAGGCCCCGCGCAATCGCTGATGACTCCTGC
GGCAGTAACATTGGCAGCGTTTTTCGATTTGTAGCATTAAATCACTTCAA
GAGGGCCTCACAGGCTCCTTCATATAGATTTCAGACCATGATGATAAGTG
CAAAGCGTTT back to top
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