EWM27128.1, cds3542 (CDS) Nannochloropsis gaditana

Overview
NameEWM27128.1
Unique Namecds3542
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:680440..680459 -
Alignment locationCM002461.1:680245..680329 -
Alignment locationCM002461.1:679532..679976 -
Alignment locationCM002461.1:679129..679325 -
Alignment locationCM002461.1:678620..678994 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27128.1
Productsmall nuclear ribonucleoprotein associated protein b
Orig transcript idgnl|cribi|Naga_100419g5.1241.mrna
GeneSmB
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:680440..680459 -
CM002461.1supercontigCM002461.1:680245..680329 -
CM002461.1supercontigCM002461.1:679532..679976 -
CM002461.1supercontigCM002461.1:679129..679325 -
CM002461.1supercontigCM002461.1:678620..678994 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR001163Ribonucl_LSM
IPR006649Ribonucl_LSM_euk/arc
Homology
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|585109307|gb|EWM27128.1| (small nuclear ribonucleoprotein associated protein b [Nannochloropsis gaditana])

HSP 1 Score: 753.436 bits (1944), Expect = 0.000e+0
Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 0
Query:    1 MISAKRFNIGSVFRFVALNHFKRASQAPSYRFQTMSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAEASLSRARLSMARPVLGFQKLEHRPWRPYQFYSPRAMRCLRSSSRADSLIVFDCVNLNGPQVGPALSAPLRASLPVASPLRLPAWVFLLAAPPVWVWPHRRAIPRQAGQAGCLPALRCRRRARRQACPHGPYRRAEGPLPEGGRADGRGDRKGGRARWGSRLDCEKYCLGRHGGGKRRTGSRGVRECENY 373
            MISAKRFNIGSVFRFVALNHFKRASQAPSYRFQTMSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAEASLSRARLSMARPVLGFQKLEHRPWRPYQFYSPRAMRCLRSSSRADSLIVFDCVNLNGPQVGPALSAPLRASLPVASPLRLPAWVFLLAAPPVWVWPHRRAIPRQAGQAGCLPALRCRRRARRQACPHGPYRRAEGPLPEGGRADGRGDRKGGRARWGSRLDCEKYCLGRHGGGKRRTGSRGVRECENY
Sbjct:    1 MISAKRFNIGSVFRFVALNHFKRASQAPSYRFQTMSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAEASLSRARLSMARPVLGFQKLEHRPWRPYQFYSPRAMRCLRSSSRADSLIVFDCVNLNGPQVGPALSAPLRASLPVASPLRLPAWVFLLAAPPVWVWPHRRAIPRQAGQAGCLPALRCRRRARRQACPHGPYRRAEGPLPEGGRADGRGDRKGGRARWGSRLDCEKYCLGRHGGGKRRTGSRGVRECENY 373          
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|298714462|emb|CBJ27484.1| (Small nuclear ribonucleoprotein-associated protein B [Ectocarpus siliculosus])

HSP 1 Score: 207.223 bits (526), Expect = 5.250e-62
Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 0
Query:   35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLM 179
            MSMS+SSKML Y+NYRMR+TI D R LVGT MAFDRH+NLVLGDCEEYR+ K KKGS       I EE+EEKR+LGLVLLRGENV SLTVEGPPP ++  KATPGGPG+GRAAGRG+    PV GAP GLAGPVRG+GGPA S+M
Sbjct:    1 MSMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPKKGS--EAAAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDTGKATPGGPGVGRAAGRGVPT-MPVQGAPRGLAGPVRGIGGPASSMM 142          
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|527191832|gb|EPS62499.1| (hypothetical protein M569_12292, partial [Genlisea aurea])

HSP 1 Score: 194.512 bits (493), Expect = 1.771e-56
Identity = 104/152 (68.42%), Postives = 115/152 (75.66%), Query Frame = 0
Query:   35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEE-AKATPG----GPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181
            MSMSKSSKML YINYRMRVTIQD R L+G FMAFDRHMNLVLGDCEE+RK+  KKG+         EE+E++R LGLVLLRGE V+SLTVEGPPPPDE   K T G    GPG+GRAAGRGI  G P    P GLAGP+RGVGGPA  +M P
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPKKGTK--------EEREDRRTLGLVLLRGEEVISLTVEGPPPPDESRLKTTSGAGVAGPGIGRAAGRGIVAGLPTQAQP-GLAGPIRGVGGPAPGMMQP 143          
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|1035902017|gb|OAY31617.1| (hypothetical protein MANES_14G127000 [Manihot esculenta])

HSP 1 Score: 192.2 bits (487), Expect = 3.813e-55
Identity = 103/153 (67.32%), Postives = 116/153 (75.82%), Query Frame = 0
Query:   35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDE------EAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181
            MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+   KG   +      EE+E++R LGLVLLRGE V+S+TVEGPPPP+E       A A P GPG+GRAAGRGI   APV+ A  GLAGP+RGVGGPA  +M P
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN------EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSATAVP-GPGIGRAAGRGIPT-APVVQAQPGLAGPIRGVGGPAPGMMQP 145          
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|1021548951|ref|XP_016165879.1| (small nuclear ribonucleoprotein-associated proteins B and B' [Arachis ipaensis] >gi|1191767855|ref|XP_020962665.1| small nuclear ribonucleoprotein-associated proteins B and B' [Arachis ipaensis])

HSP 1 Score: 191.43 bits (485), Expect = 4.814e-55
Identity = 106/152 (69.74%), Postives = 118/152 (77.63%), Query Frame = 0
Query:   35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEE-AKATP----GGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181
            MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+   KG      TA  E++E++R LGLVLLRGE V+S+TVEGPPPP+E  AKA      GGPG+GRAAGRGI   APV+ A  GLAGPVRGVGGPA  +M P
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK----TAPGEDREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVNAAAMGGPGIGRAAGRGIPA-APVVQAQPGLAGPVRGVGGPAPGMMQP 147          
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|747069947|ref|XP_011081782.1| (LOW QUALITY PROTEIN: small nuclear ribonucleoprotein-associated protein B'-like [Sesamum indicum])

HSP 1 Score: 191.43 bits (485), Expect = 5.014e-55
Identity = 103/153 (67.32%), Postives = 115/153 (75.16%), Query Frame = 0
Query:   35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDE------EAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181
            MSMSKSSKML YINYRMRVTIQD R L+G FMAFDRHMNLVLGDCEE+RK+   KGS         EE+E++R LGLVLLRGE V+SLTVEGPPPPD+       A A P GPG+GRAAGRG+  G P+  A  GLAGPVRGVGGPA  +M P
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPTKGSK--------EEREDRRTLGLVLLRGEEVISLTVEGPPPPDDSRLKPTSANAIP-GPGIGRAAGRGVITG-PLTQAQPGLAGPVRGVGGPAPGMMQP 143          
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|1137203781|gb|OMO73738.1| (hypothetical protein COLO4_26893 [Corchorus olitorius])

HSP 1 Score: 191.43 bits (485), Expect = 6.841e-55
Identity = 104/153 (67.97%), Postives = 117/153 (76.47%), Query Frame = 0
Query:   35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEE------AKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181
            MSMSKSSKML +INYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+   KG   S   +  EE+E++R LGLVLLRGE V+S+TVEGPPPP+E       A A P GPGMGRAAGRGI  G P++ A  GLAGPVRGVGGPA  +M P
Sbjct:    1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNS---STNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRSKAAAANAVP-GPGMGRAAGRGIPTG-PLVQAQPGLAGPVRGVGGPAPGMMQP 148          
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|1137215877|gb|OMO83192.1| (hypothetical protein CCACVL1_11513 [Corchorus capsularis])

HSP 1 Score: 191.045 bits (484), Expect = 8.007e-55
Identity = 103/153 (67.32%), Postives = 117/153 (76.47%), Query Frame = 0
Query:   35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEE------AKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181
            MSMSKSSKML +INYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+   KG   S   +  EE+E++R LGLVLLRGE V+S+TVEGPPPP+E       A A P GPGMGRAAGRG+  G P++ A  GLAGPVRGVGGPA  +M P
Sbjct:    1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNS---STNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRSKAAAANAVP-GPGMGRAAGRGVPTG-PLVQAQPGLAGPVRGVGGPAPGMMQP 148          
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|1179508410|ref|XP_020677094.1| (small nuclear ribonucleoprotein-associated protein B' [Dendrobium catenatum])

HSP 1 Score: 190.66 bits (483), Expect = 9.285e-55
Identity = 106/154 (68.83%), Postives = 119/154 (77.27%), Query Frame = 0
Query:   35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSG--GSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEE-AKATP----GGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181
            MSMSK SKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+   KGS   G GP    EE+E++R LGLVLLRGE VVS+TVEGPPPPDE  AKA+      GPG+GRAAGRGI   AP++ A  GLAGPVRG+GGP+  +M P
Sbjct:    1 MSMSKGSKMLQYINYRMRVTIQDGRMLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGSKKVGGGPP---EEREDRRTLGLVLLRGEEVVSMTVEGPPPPDESRAKASTASALAGPGIGRAAGRGIPT-APLIHAQPGLAGPVRGIGGPSPGMMQP 150          
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|848894264|ref|XP_012847168.1| (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B'-like [Erythranthe guttata] >gi|604317207|gb|EYU29283.1| hypothetical protein MIMGU_mgv1a011695mg [Erythranthe guttata])

HSP 1 Score: 190.274 bits (482), Expect = 1.017e-54
Identity = 102/153 (66.67%), Postives = 115/153 (75.16%), Query Frame = 0
Query:   35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDE------EAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181
            MSMSKSSKML YINYRMRVTIQD R L+G FMAFDRHMNLVLGDCEE+RK+   KGS         EE+E++R LGLVLLRGE V+SLTVEGPPPPD+       A A P GPG+GRAAGRG+  G P+  A  GL+GPVRGVGGPA  +M P
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPTKGSK--------EEREDRRTLGLVLLRGEEVISLTVEGPPPPDDSRLKTTSANAVP-GPGIGRAAGRGVVTG-PLTQAQPGLSGPVRGVGGPAPGMMQP 143          
The following BLAST results are available for this feature:
BLAST of EWM27128.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109307|gb|EWM27128.1|0.000e+0100.00small nuclear ribonucleoprotein associated protein... [more]
gi|298714462|emb|CBJ27484.1|5.250e-6273.10Small nuclear ribonucleoprotein-associated protein... [more]
gi|527191832|gb|EPS62499.1|1.771e-5668.42hypothetical protein M569_12292, partial [Genlisea... [more]
gi|1035902017|gb|OAY31617.1|3.813e-5567.32hypothetical protein MANES_14G127000 [Manihot escu... [more]
gi|1021548951|ref|XP_016165879.1|4.814e-5569.74small nuclear ribonucleoprotein-associated protein... [more]
gi|747069947|ref|XP_011081782.1|5.014e-5567.32LOW QUALITY PROTEIN: small nuclear ribonucleoprote... [more]
gi|1137203781|gb|OMO73738.1|6.841e-5567.97hypothetical protein COLO4_26893 [Corchorus olitor... [more]
gi|1137215877|gb|OMO83192.1|8.007e-5567.32hypothetical protein CCACVL1_11513 [Corchorus caps... [more]
gi|1179508410|ref|XP_020677094.1|9.285e-5568.83small nuclear ribonucleoprotein-associated protein... [more]
gi|848894264|ref|XP_012847168.1|1.017e-5466.67PREDICTED: small nuclear ribonucleoprotein-associa... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3551rna3551Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications