EWM27128.1, cds3542 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|585109307|gb|EWM27128.1| (small nuclear ribonucleoprotein associated protein b [Nannochloropsis gaditana]) HSP 1 Score: 753.436 bits (1944), Expect = 0.000e+0 Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 0 Query: 1 MISAKRFNIGSVFRFVALNHFKRASQAPSYRFQTMSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAEASLSRARLSMARPVLGFQKLEHRPWRPYQFYSPRAMRCLRSSSRADSLIVFDCVNLNGPQVGPALSAPLRASLPVASPLRLPAWVFLLAAPPVWVWPHRRAIPRQAGQAGCLPALRCRRRARRQACPHGPYRRAEGPLPEGGRADGRGDRKGGRARWGSRLDCEKYCLGRHGGGKRRTGSRGVRECENY 373 MISAKRFNIGSVFRFVALNHFKRASQAPSYRFQTMSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAEASLSRARLSMARPVLGFQKLEHRPWRPYQFYSPRAMRCLRSSSRADSLIVFDCVNLNGPQVGPALSAPLRASLPVASPLRLPAWVFLLAAPPVWVWPHRRAIPRQAGQAGCLPALRCRRRARRQACPHGPYRRAEGPLPEGGRADGRGDRKGGRARWGSRLDCEKYCLGRHGGGKRRTGSRGVRECENY Sbjct: 1 MISAKRFNIGSVFRFVALNHFKRASQAPSYRFQTMSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAEASLSRARLSMARPVLGFQKLEHRPWRPYQFYSPRAMRCLRSSSRADSLIVFDCVNLNGPQVGPALSAPLRASLPVASPLRLPAWVFLLAAPPVWVWPHRRAIPRQAGQAGCLPALRCRRRARRQACPHGPYRRAEGPLPEGGRADGRGDRKGGRARWGSRLDCEKYCLGRHGGGKRRTGSRGVRECENY 373
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|298714462|emb|CBJ27484.1| (Small nuclear ribonucleoprotein-associated protein B [Ectocarpus siliculosus]) HSP 1 Score: 207.223 bits (526), Expect = 5.250e-62 Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 0 Query: 35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLM 179 MSMS+SSKML Y+NYRMR+TI D R LVGT MAFDRH+NLVLGDCEEYR+ K KKGS I EE+EEKR+LGLVLLRGENV SLTVEGPPP ++ KATPGGPG+GRAAGRG+ PV GAP GLAGPVRG+GGPA S+M Sbjct: 1 MSMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPKKGS--EAAAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDTGKATPGGPGVGRAAGRGVPT-MPVQGAPRGLAGPVRGIGGPASSMM 142
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|527191832|gb|EPS62499.1| (hypothetical protein M569_12292, partial [Genlisea aurea]) HSP 1 Score: 194.512 bits (493), Expect = 1.771e-56 Identity = 104/152 (68.42%), Postives = 115/152 (75.66%), Query Frame = 0 Query: 35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEE-AKATPG----GPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181 MSMSKSSKML YINYRMRVTIQD R L+G FMAFDRHMNLVLGDCEE+RK+ KKG+ EE+E++R LGLVLLRGE V+SLTVEGPPPPDE K T G GPG+GRAAGRGI G P P GLAGP+RGVGGPA +M P Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPKKGTK--------EEREDRRTLGLVLLRGEEVISLTVEGPPPPDESRLKTTSGAGVAGPGIGRAAGRGIVAGLPTQAQP-GLAGPIRGVGGPAPGMMQP 143
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|1035902017|gb|OAY31617.1| (hypothetical protein MANES_14G127000 [Manihot esculenta]) HSP 1 Score: 192.2 bits (487), Expect = 3.813e-55 Identity = 103/153 (67.32%), Postives = 116/153 (75.82%), Query Frame = 0 Query: 35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDE------EAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181 MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+ KG + EE+E++R LGLVLLRGE V+S+TVEGPPPP+E A A P GPG+GRAAGRGI APV+ A GLAGP+RGVGGPA +M P Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN------EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSATAVP-GPGIGRAAGRGIPT-APVVQAQPGLAGPIRGVGGPAPGMMQP 145
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|1021548951|ref|XP_016165879.1| (small nuclear ribonucleoprotein-associated proteins B and B' [Arachis ipaensis] >gi|1191767855|ref|XP_020962665.1| small nuclear ribonucleoprotein-associated proteins B and B' [Arachis ipaensis]) HSP 1 Score: 191.43 bits (485), Expect = 4.814e-55 Identity = 106/152 (69.74%), Postives = 118/152 (77.63%), Query Frame = 0 Query: 35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEE-AKATP----GGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181 MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+ KG TA E++E++R LGLVLLRGE V+S+TVEGPPPP+E AKA GGPG+GRAAGRGI APV+ A GLAGPVRGVGGPA +M P Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK----TAPGEDREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVNAAAMGGPGIGRAAGRGIPA-APVVQAQPGLAGPVRGVGGPAPGMMQP 147
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|747069947|ref|XP_011081782.1| (LOW QUALITY PROTEIN: small nuclear ribonucleoprotein-associated protein B'-like [Sesamum indicum]) HSP 1 Score: 191.43 bits (485), Expect = 5.014e-55 Identity = 103/153 (67.32%), Postives = 115/153 (75.16%), Query Frame = 0 Query: 35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDE------EAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181 MSMSKSSKML YINYRMRVTIQD R L+G FMAFDRHMNLVLGDCEE+RK+ KGS EE+E++R LGLVLLRGE V+SLTVEGPPPPD+ A A P GPG+GRAAGRG+ G P+ A GLAGPVRGVGGPA +M P Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPTKGSK--------EEREDRRTLGLVLLRGEEVISLTVEGPPPPDDSRLKPTSANAIP-GPGIGRAAGRGVITG-PLTQAQPGLAGPVRGVGGPAPGMMQP 143
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|1137203781|gb|OMO73738.1| (hypothetical protein COLO4_26893 [Corchorus olitorius]) HSP 1 Score: 191.43 bits (485), Expect = 6.841e-55 Identity = 104/153 (67.97%), Postives = 117/153 (76.47%), Query Frame = 0 Query: 35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEE------AKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181 MSMSKSSKML +INYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+ KG S + EE+E++R LGLVLLRGE V+S+TVEGPPPP+E A A P GPGMGRAAGRGI G P++ A GLAGPVRGVGGPA +M P Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNS---STNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRSKAAAANAVP-GPGMGRAAGRGIPTG-PLVQAQPGLAGPVRGVGGPAPGMMQP 148
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|1137215877|gb|OMO83192.1| (hypothetical protein CCACVL1_11513 [Corchorus capsularis]) HSP 1 Score: 191.045 bits (484), Expect = 8.007e-55 Identity = 103/153 (67.32%), Postives = 117/153 (76.47%), Query Frame = 0 Query: 35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEE------AKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181 MSMSKSSKML +INYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+ KG S + EE+E++R LGLVLLRGE V+S+TVEGPPPP+E A A P GPGMGRAAGRG+ G P++ A GLAGPVRGVGGPA +M P Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNS---STNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRSKAAAANAVP-GPGMGRAAGRGVPTG-PLVQAQPGLAGPVRGVGGPAPGMMQP 148
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|1179508410|ref|XP_020677094.1| (small nuclear ribonucleoprotein-associated protein B' [Dendrobium catenatum]) HSP 1 Score: 190.66 bits (483), Expect = 9.285e-55 Identity = 106/154 (68.83%), Postives = 119/154 (77.27%), Query Frame = 0 Query: 35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSG--GSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEE-AKATP----GGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181 MSMSK SKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+ KGS G GP EE+E++R LGLVLLRGE VVS+TVEGPPPPDE AKA+ GPG+GRAAGRGI AP++ A GLAGPVRG+GGP+ +M P Sbjct: 1 MSMSKGSKMLQYINYRMRVTIQDGRMLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGSKKVGGGPP---EEREDRRTLGLVLLRGEEVVSMTVEGPPPPDESRAKASTASALAGPGIGRAAGRGIPT-APLIHAQPGLAGPVRGIGGPSPGMMQP 150
BLAST of EWM27128.1 vs. NCBI_GenBank
Match: gi|848894264|ref|XP_012847168.1| (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B'-like [Erythranthe guttata] >gi|604317207|gb|EYU29283.1| hypothetical protein MIMGU_mgv1a011695mg [Erythranthe guttata]) HSP 1 Score: 190.274 bits (482), Expect = 1.017e-54 Identity = 102/153 (66.67%), Postives = 115/153 (75.16%), Query Frame = 0 Query: 35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDE------EAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTP 181 MSMSKSSKML YINYRMRVTIQD R L+G FMAFDRHMNLVLGDCEE+RK+ KGS EE+E++R LGLVLLRGE V+SLTVEGPPPPD+ A A P GPG+GRAAGRG+ G P+ A GL+GPVRGVGGPA +M P Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPTKGSK--------EEREDRRTLGLVLLRGEEVISLTVEGPPPPDDSRLKTTSANAVP-GPGIGRAAGRGVVTG-PLTQAQPGLSGPVRGVGGPAPGMMQP 143 The following BLAST results are available for this feature:
BLAST of EWM27128.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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