rna3548, rna3548 (mRNA) Nannochloropsis gaditana

Overview
Namerna3548
Unique Namerna3548
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1695
Alignment locationCM002461.1:672425..673412 +

Link to JBrowse

Properties
Property NameValue
Productvacuolar protein sorting-associated protein 25
Orig transcript idgnl|cribi|Naga_100010g110.6154.mrna
Orig protein idgnl|cribi|Naga_100010g110.6154
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:672425..673412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g110gene3418Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3548rna3548-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27184.1cds3539Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3548 ID=rna3548|Name=rna3548|organism=Nannochloropsis gaditana|type=mRNA|length=1695bp
TAAGATATGGGCCGGGAGGCTAGCTCCCGCCCTCCAGCCCCGCAGCCCGC
CGCATGCGACCTGTCTACTACCCACCATTCTTACTCACGTTGCCGTGCGC
ACGACTCCACAGGCAAAGTAACGTGTCGAATCAAGTAGAGATGCCTCCCA
AGAAGTCTAGCCTGAAATCGGCAGCCAAGGAGGAGGCAATCAGGGAACAG
CAGAAACGCATCAGTGAGCGGACCAAATCCCTTTCGAAGGCCCTAAAGGC
GGCTCCTACAAGGGACGAGGACGCTATGGACGTGGACGAGGAAGGAGGAG
AGCGCCAGGAAAAGGAAAAGGGTCGCGCACGCGGCCGCCCCCGCAGCGCC
GGCAGTGTGAAGAGCATGGACTCGGAAACCACGAGCACCCGCAGCAGCGG
CACCAGCAGAAGCAAGAGCAAAACTAAGACTAGTAGCGCAGTCAAGAGGA
AAAGTGTTTCACCTGTGGAGCGTCTGACCAAAAAGCAGGCAATTGAAGAT
GCGAGCAACGCAATTAAGGCACGCAGTAATGCTCATTCCTCCCTGATGGC
GAGCTCGAGCTCTGCTTTCAGCCACCGAAAGGTTTCCGCGTCTGTACAGG
CCACCGCACCAGCACGTGGACGGGGCATACCATCGAAGCGCCTCGGTGCT
GTCAAGCCAGTCCAGCTACGCGCAAAGGAGGAGGAGGAAGAAGAAGAGGA
GGCAGAGGAGGAGGAGGAGGTTGTGATAGCGCCTTGGAGATCTGCGCGCC
ACTCAGTGCTCCGCGTGTCGGCCCTGACACGCCGGAGAGTGGCCGTACCC
CTGGCTGCGTCGCCGCAGCCACCAGGACGGGCGCGAGCAGATCGGCTCCG
CCCCGAGGAGGAATTGGATGTGGCGAAGGAGCAGGCTACTGAAAATGCTG
TGAAACCGATGGGCGTATTGCTACGACTTGGCTACGCCATGTTCCGGCTG
GTGGGGTACGCGGTCGTAATCTTGACGGTCGCCTTCACGCTGCATTTGTC
GTTCGAGGCGTATCATGTCATGACGCCCTTGTGTTTTTATGACTCGTACA
GCGATGGGAAGGTGTTGTCAGGGCAAAGCGGGAAAACCTGCAAGACCGTT
GTGCCTTGCCCGCCTCTGTTTCTCTGCCATGGAGGTCAGATCAGGGGCCT
CGCCGGTATGATTCCAGAGAAGGTCAATGACAGTGCCAGCATCAGCTCGG
AGTCGCAGACAGAGGTCCCCGAGCACGTGAAAGAGGGCCTGAGCTTGAAT
GCTCAGAGAAATAGTCCAGACGAGAAAGACCAGTTGCAGGATGCGGGGGA
AGAGGAAGGAGGCATGGGGCTGGAGGAAAAGGGGAACAGAGATTCACCGG
AGGTAGATTGGAAGGCGGAGGAGGAAGAGGAGAATGAGAGAGAGGGAGAG
GAGGAGGAAAGATGATACGGTTGATGAAGAGGGATGAAGGGAGGGAAGAC
GAAGAATAAAGTGTGAAGGAGGACTGTCGGAAAGAAGCCTTTCATAGATC
AAGGATCCTTTCACGAGGAGGTATGCACTTGTTGCCGGACATGCAGAAAG
GGGAGAGCATGGGCCGGGCGGACACGCCCTCTCGTGCACTAGGAAAGCAA
AAGAAAAAGCACACTCAACGAAGCGTAAAAGCAGGCAAGTCGTCAAAAGC
ATAACATGACATTTTCAAAGAATTTAAACACCTTTTGGTCCTCGT
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protein sequence of rna3548

>rna3548-protein ID=rna3548-protein|Name=rna3548|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MVVSPVPPEEVLPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKG
VQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTAL
VLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPT
IFRRALEILERQGKAALFKGSSEEGDGIKFVADA
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mRNA from alignment at CM002461.1:672425..673412+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3548 ID=rna3548|Name=rna3548|organism=Nannochloropsis gaditana|type=mRNA|length=988bp|location=Sequence derived from alignment at CM002461.1:672425..673412+ (Nannochloropsis gaditana)
TCTGGAACGGGAAAGTAGAGGGTGACTATGGTCCGTCTGGCACTTCCGGA
GGCTCCCCCCGGCGTCCCcggcgagggcgagagggacaGGCGATACGAGG
CCACTGATCGACTCACATGTCAGGGAACTGACGGGGTTTCCGACATACAG
CGGCGACATACACCTTTGGCCTTCCTTATTCGCAGCAGCTTCGTGTTACA
TCGACGAGCAGTGCGAGTGAGTCGTATCCTGCGGAGTGGTCCAGTCGCCC
GGAGGAGGGCCCGCCTGGCCGCGCTTTGACTTGTTGTACGTGCTCGTCCC
GCGGACAAAGCTCTTCGCACATCCACGATGGTAGTATCACCAGTGCCGCC
AGAAGAGGTGTTGCCTGAGTATCATGGCTTTCCGCCTTTCTTTACGCTGC
AACCTGTCCTGGAGACTCGGAAAATGCAGCTAAAGCTGTGGCGTGAACTG
GTACTAAAATGGCACCAGGCAAAGGGTGTCCAGATTTTGAAGTTGAACGA
GTGGCCGCTTTTTGCCAATCCCGCCATCAACCGCACCTTACCATTGGATG
GGCGACGTGAAGTAGTCCAAAGCCTGGTTAGTAGCGGCCATGCAGAGTGG
AAGGACGATTCTAGGACCACGGCACTCGTTCTCTGGCGCTCCGCTCAGGA
GGTCGCTGCCTCCATCCTGACCTTCATCCGCGACAATGGCATGGCCGGCA
ATGTATATACCGTGTATGAGCTGCGTGCCGGGGACGAAATCACGGTTGGC
GCCGATTTCCATGGAACGGAACCCACAATATTTCGGCGGGCATTGGAGAT
TCTGGAGCgccaggggaaggcagcCTTGTTTAAAGGATCatccgaggagg
gggacggaatTAAATTTGTTGCAGACGCATAGACAGGGCATAGAAAGAAA
ATGTTATGTAAATTGCATTTAAATTCGTGAAAATGTAGGGAAGCGGTCTT
TACGTCTTTCCTTCTACTTTCCATGGCCGCTATCTTCC
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Coding sequence (CDS) from alignment at CM002461.1:672425..673412+

>rna3548 ID=rna3548|Name=rna3548|organism=Nannochloropsis gaditana|type=CDS|length=555bp|location=Sequence derived from alignment at CM002461.1:672425..673412+ (Nannochloropsis gaditana)
ATGGTAGTATCACCAGTGCCGCCAGAAGAGGTGTTGCCTGAGTATCATGG
CTTTCCGCCTTTCTTTACGCTGCAACCTGTCCTGGAGACTCGGAAAATGC
AGCTAAAGCTGTGGCGTGAACTGGTACTAAAATGGCACCAGGCAAAGGGT
GTCCAGATTTTGAAGTTGAACGAGTGGCCGCTTTTTGCCAATCCCGCCAT
CAACCGCACCTTACCATTGGATGGGCGACGTGAAGTAGTCCAAAGCCTGG
TTAGTAGCGGCCATGCAGAGTGGAAGGACGATTCTAGGACCACGGCACTC
GTTCTCTGGCGCTCCGCTCAGGAGGTCGCTGCCTCCATCCTGACCTTCAT
CCGCGACAATGGCATGGCCGGCAATGTATATACCGTGTATGAGCTGCGTG
CCGGGGACGAAATCACGGTTGGCGCCGATTTCCATGGAACGGAACCCACA
ATATTTCGGCGGGCATTGGAGATTCTGGAGCgccaggggaaggcagcCTT
GTTTAAAGGATCatccgaggagggggacggaatTAAATTTGTTGCAGACG
CATAG
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Synonyms
Publications