EWM27184.1, cds3539 (CDS) Nannochloropsis gaditana

Overview
NameEWM27184.1
Unique Namecds3539
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:672752..673306 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27184.1
Productvacuolar protein sorting-associated protein 25
Orig transcript idgnl|cribi|Naga_100010g110.6154.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:672752..673306 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0005768endosome
Vocabulary: INTERPRO
TermDefinition
IPR008570ESCRT-II_cplx_vps25-sub
IPR014041ESCRT-II_cplx_Vps25-sub_N
IPR011991WHTH_DNA-bd_dom
Homology
BLAST of EWM27184.1 vs. NCBI_GenBank
Match: gi|585109364|gb|EWM27184.1| (vacuolar protein sorting-associated protein 25 [Nannochloropsis gaditana])

HSP 1 Score: 377.481 bits (968), Expect = 1.804e-132
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
Query:    1 MVVSPVPPEEVLPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFVADA 184
            MVVSPVPPEEVLPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFVADA
Sbjct:    1 MVVSPVPPEEVLPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFVADA 184          
BLAST of EWM27184.1 vs. NCBI_GenBank
Match: gi|698794664|ref|XP_009830361.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574114950|gb|ETV80437.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 182.185 bits (461), Expect = 2.366e-55
Identity = 88/174 (50.57%), Postives = 115/174 (66.09%), Query Frame = 0
Query:   11 VLPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFVADA 184
              PE++GFPPFFTLQPV  TR+ QL LW+ LVL +H++    +L  N  P+F N  INR L ++ R  +V  LV  G+AEW+DD+ T   + W+   E AA I TF  D GM  NVYTVYEL +G+E T GA F+G EP + R+ALEILE + KAA+  G + E DG+KF+A A
Sbjct:    9 TFPEHYGFPPFFTLQPVRSTREKQLILWKALVLDYHKSMNQPVLTPNSSPIFENQQINRKLSMEARTAIVTYLVRCGNAEWEDDTHTRLRIFWKPPAEWAAEIYTFATDRGMISNVYTVYELHSGEE-TQGASFYGLEPWLLRKALEILEHEAKAAIIHGDTPENDGVKFLATA 181          
BLAST of EWM27184.1 vs. NCBI_GenBank
Match: gi|669163018|ref|XP_008617071.1| (hypothetical protein SDRG_12768 [Saprolegnia diclina VS20] >gi|530731277|gb|EQC29519.1| hypothetical protein SDRG_12768 [Saprolegnia diclina VS20])

HSP 1 Score: 178.333 bits (451), Expect = 8.383e-54
Identity = 85/173 (49.13%), Postives = 114/173 (65.90%), Query Frame = 0
Query:   12 LPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFVADA 184
             PE++ FPPFFTLQP+  TR+ QL LW+ LV+++H+A    I   N  P+F N  INR L ++ R  VV  +V  G+ EW+DD+ T   + W+S  E AA I  F +DNGM  NVYT+YEL AGDE T GA F+G E  + R+ALE+LE + KAA+  G + E DG+KF+A A
Sbjct:   11 FPEHYHFPPFFTLQPIRSTREKQLILWKTLVVEYHRALQQPIFTPNTTPIFENTTINRKLSMEARHAVVSYIVRCGNGEWEDDTHTRCRIFWKSPAEWAAEIYAFAQDNGMLNNVYTLYELHAGDE-TEGASFYGIEMWLLRKALEVLEHEAKAAIIHGDTPENDGVKFLATA 182          
BLAST of EWM27184.1 vs. NCBI_GenBank
Match: gi|673014378|ref|XP_008861150.1| (hypothetical protein H310_00228 [Aphanomyces invadans] >gi|574482748|gb|ETW09739.1| hypothetical protein H310_00228 [Aphanomyces invadans])

HSP 1 Score: 177.178 bits (448), Expect = 1.802e-53
Identity = 86/172 (50.00%), Postives = 112/172 (65.12%), Query Frame = 0
Query:   11 VLPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFVA 182
              PE++ FPPFFTLQPV  TR+ QL LW+ LVL +H+A    +L  N   +F N  INR L ++ R  +V  LV  G+AEW+DD+ T   + W+   E AA I TF  D GM  NVYTVYEL +G+E T GA FHG EP + R+ALEILE + KAA+  G + + DG+KF+A
Sbjct:    9 TFPEHYSFPPFFTLQPVRSTREKQLILWKALVLDYHKAMNQPVLTPNSTSIFENQQINRKLSMEARTAIVTYLVRCGNAEWEDDTHTRLRIFWKPPAEWAAEIYTFANDRGMINNVYTVYELHSGEE-TEGASFHGLEPWLLRKALEILELEAKAAIIHGDTPDNDGVKFLA 179          
BLAST of EWM27184.1 vs. NCBI_GenBank
Match: gi|325183621|emb|CCA18081.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 174.096 bits (440), Expect = 3.912e-52
Identity = 82/174 (47.13%), Postives = 115/174 (66.09%), Query Frame = 0
Query:    9 EEVLPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFVA 182
            E   PEY  FPPFFT+QPV  TR+ QL LW++L+L +H AK V I      P+F N  I+R +  +GR  +++ L+  G+A W+D S+T   V+W+   E A  +  F++D GM G +YTVYEL AG+E T+G+ FHG EP I R AL+ILE+ GKA L  G++ + DG+KF+A
Sbjct:    6 EFTFPEYFDFPPFFTIQPVRATREKQLGLWKQLILDYHHAKEVSIFNPQTSPVFENSKISRKMKSEGRTTIIEFLIQCGNAMWEDISQTRCRVMWKKPTEWAVELYDFVKDRGMLGEIYTVYELYAGEE-TLGSQFHGMEPWILRDALKILEQHGKAMLIFGATCQEDGVKFIA 178          
BLAST of EWM27184.1 vs. NCBI_GenBank
Match: gi|635359929|emb|CCI11058.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 172.555 bits (436), Expect = 1.139e-51
Identity = 81/174 (46.55%), Postives = 114/174 (65.52%), Query Frame = 0
Query:    9 EEVLPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFVA 182
            E   PEY+ FPPFFTLQPV  TR+ QL LW++L+L +HQA+ + I      PLFAN  I+R +  +G+  +++ L+  G+A W+D S T   ++W+   E AA +  F++  GM G +YTVYEL AG+E T+G+ FHG EP   R AL+ILE  GK  L  G++ E DG+KF+A
Sbjct:    6 EFTFPEYYDFPPFFTLQPVRATREKQLGLWKQLILDYHQARHLSIFSPQTSPLFANCKISRKMKAEGQTAIIEYLIQCGNAIWEDASETRCRLIWKKPAEWAAELYDFVKGRGMLGKIYTVYELYAGEE-TLGSQFHGMEPWSLRDALKILEEHGKVVLISGTTCEEDGVKFIA 178          
BLAST of EWM27184.1 vs. NCBI_GenBank
Match: gi|1173932540|gb|OQR84489.1| (hypothetical protein ACHHYP_13295 [Achlya hypogyna])

HSP 1 Score: 172.94 bits (437), Expect = 1.183e-51
Identity = 85/185 (45.95%), Postives = 117/185 (63.24%), Query Frame = 0
Query:    1 MVVSPVPPEE-VLPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFVADA 184
            M  +P P      PE++ FPPFFTLQP+  TR+ QL LW+ LV+ +H+A    I   N  P+F N  I+R L ++ R  VV  LV  G+AEW+DD+ T   + W+S  E AA I  F ++ GM  NVYT++EL AG+E T GA F+G E  + R+ALE+LE + KAA+  G + E DG+KF+A A
Sbjct:    1 MTTAPAPATTFTFPEHYHFPPFFTLQPIRSTREKQLILWKALVVDYHRALNQPIFTPNTTPIFENRDISRKLSMEARHAVVSYLVRCGNAEWEDDTHTRCRIFWKSPAEWAAEIYAFAQERGMLNNVYTLFELHAGEE-TQGASFYGIESWLLRKALEVLEHEAKAAIIHGDTPENDGVKFLATA 184          
BLAST of EWM27184.1 vs. NCBI_GenBank
Match: gi|675180629|ref|XP_008899199.1| (hypothetical protein PPTG_06905 [Phytophthora parasitica INRA-310] >gi|566032609|gb|ETI55520.1| hypothetical protein F443_01799 [Phytophthora parasitica P1569] >gi|567970310|gb|ETK95351.1| hypothetical protein L915_01714 [Phytophthora parasitica] >gi|567998677|gb|ETL48742.1| hypothetical protein L916_01686 [Phytophthora parasitica] >gi|568027853|gb|ETM01798.1| hypothetical protein L917_01651 [Phytophthora parasitica] >gi|568058402|gb|ETM55032.1| hypothetical protein L914_01707 [Phytophthora parasitica] >gi|568100988|gb|ETN15678.1| hypothetical protein PPTG_06905 [Phytophthora parasitica INRA-310] >gi|570336329|gb|ETO84277.1| hypothetical protein F444_01800 [Phytophthora parasitica P1976] >gi|570960372|gb|ETP25351.1| hypothetical protein F441_01762 [Phytophthora parasitica CJ01A1] >gi|570996821|gb|ETP53353.1| hypothetical protein F442_01736 [Phytophthora parasitica P10297])

HSP 1 Score: 171.785 bits (434), Expect = 2.226e-51
Identity = 81/170 (47.65%), Postives = 116/170 (68.24%), Query Frame = 0
Query:   13 PEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFVA 182
            PEY+ FPPFFTLQPV  TR+ QL LW++L+L++H+A  + + +     LF N  I+R +  DGR  VV+ L+  GH  W+DD++T   ++W+   E AA I  F +++GM GNV+TVYEL AG+E T+G + HG EP + R AL +LE +GKAA+  G + E DG+KF+A
Sbjct:    7 PEYYDFPPFFTLQPVRATREKQLVLWQQLILEYHRAHDLPLFQPLASTLFENVKISRNMAQDGRMAVVEHLIRCGHGRWEDDTKTRCRIMWKKPAEWAAEIYDFAKEHGMLGNVFTVYELYAGEE-TLGTNIHGMEPWLLREALRVLEGEGKAAVIAGETCEEDGVKFLA 175          
BLAST of EWM27184.1 vs. NCBI_GenBank
Match: gi|743796780|ref|XP_010924814.1| (PREDICTED: vacuolar protein sorting-associated protein 25 [Elaeis guineensis] >gi|743796784|ref|XP_010924815.1| PREDICTED: vacuolar protein sorting-associated protein 25 [Elaeis guineensis])

HSP 1 Score: 164.081 bits (414), Expect = 2.928e-48
Identity = 78/172 (45.35%), Postives = 119/172 (69.19%), Query Frame = 0
Query:   12 LPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNE-WPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFVA 182
            LP +  +PP+FTLQPV ETR+ Q++LW+EL+L + + + + ++ L E +PLF+NP I R+L  + R+  + +LV+ GHAEW D S    L+LWR  Q+ AA IL F+++NG   +V TV ++R+G E T G D  G +  +  RAL +LE++GKAA+FKG+S + +G+KF A
Sbjct:    9 LPYFFNYPPYFTLQPVRETREKQVQLWKELILDYCRNQKIFVIGLEEDFPLFSNPVIERSLSHEARKVFLNALVAEGHAEWMDKSHKKCLILWRRIQDWAAYILNFVKENGFEDSVMTVEDIRSGIE-TRGTDLAGIDRGVLMRALRLLEQKGKAAIFKGTSADDEGVKFSA 179          
BLAST of EWM27184.1 vs. NCBI_GenBank
Match: gi|219125135|ref|XP_002182843.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405637|gb|EEC45579.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 163.696 bits (413), Expect = 3.260e-48
Identity = 75/173 (43.35%), Postives = 112/173 (64.74%), Query Frame = 0
Query:    8 PEEVLPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKF 180
            P+   PE++ FPPFFT+QPVL TR+ Q+ LWREL+L++H  K ++ L +++ PL+ N  I R L     +EV+      GH EW+D ++TT  +LWR+ +++A  I  +   NG  G+V TVYEL +G+++  G  F G +  + RRAL ILE +GK  +F+G + E DGIKF
Sbjct:    2 PDFQYPEFYSFPPFFTIQPVLATREKQMALWRELILRYHTEKKIKTLVVHDCPLWKNDNIKRRLQPGEIQEVLDDFCRHGHGEWQDANKTTCRILWRTPEQLATDIHQWAEKNGYVGSVCTVYELHSGEDVN-GMSFQGADEELLRRALSILEDRGKCTIFRGETSEEDGIKF 173          
The following BLAST results are available for this feature:
BLAST of EWM27184.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109364|gb|EWM27184.1|1.804e-132100.00vacuolar protein sorting-associated protein 25 [Na... [more]
gi|698794664|ref|XP_009830361.1|2.366e-5550.57hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|669163018|ref|XP_008617071.1|8.383e-5449.13hypothetical protein SDRG_12768 [Saprolegnia dicli... [more]
gi|673014378|ref|XP_008861150.1|1.802e-5350.00hypothetical protein H310_00228 [Aphanomyces invad... [more]
gi|325183621|emb|CCA18081.1|3.912e-5247.13conserved hypothetical protein [Albugo laibachii N... [more]
gi|635359929|emb|CCI11058.1|1.139e-5146.55unnamed protein product [Albugo candida][more]
gi|1173932540|gb|OQR84489.1|1.183e-5145.95hypothetical protein ACHHYP_13295 [Achlya hypogyna... [more]
gi|675180629|ref|XP_008899199.1|2.226e-5147.65hypothetical protein PPTG_06905 [Phytophthora para... [more]
gi|743796780|ref|XP_010924814.1|2.928e-4845.35PREDICTED: vacuolar protein sorting-associated pro... [more]
gi|219125135|ref|XP_002182843.1|3.260e-4843.35predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3548rna3548Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications