rna3530, rna3530 (mRNA) Nannochloropsis gaditana

Overview
Namerna3530
Unique Namerna3530
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1180
Alignment locationCM002461.1:612645..613562 +

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Properties
Property NameValue
Productef-1 guanine nucleotide exchange domain-containing
Orig transcript idgnl|cribi|Naga_100010g89.6104.mrna
Orig protein idgnl|cribi|Naga_100010g89.6104
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:612645..613562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g89gene3400Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3530rna3530-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27134.1cds3521Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3530 ID=rna3530|Name=rna3530|organism=Nannochloropsis gaditana|type=mRNA|length=1180bp
AGGTCCCCTTCTTCACCTTGCCCACGACCCGGTCCTTGGTCTGGACACAG
CAAATCAGGCCAAGGCCATGGCCTGCCATGCTTGAGCAGGACGGCGTAGG
CCCCATTCGACGGGCCTTGGCTCACTTCAAACGGCATCCTGGGTGCATGG
CCATCCGTGTTCGACAGCCGTCATATGCTCATGCTCACCGCCCCATCCCT
TTAATTCGACGTCACAGAACGCATGGCAGAAGAGTTGCGATCGGTACAGG
TCTTTGGCCGCAAGAAAACGGCTACAGCAGTTGCGTTTGTGAAAGACGGG
CGTGGCCTCATCAACGTCAATGGAGCGCCCATTGAGAACGTGGAGCCGGA
GCTGCTTCGTTTCAAGATTTTGGAGCCCGTATTGCTACTGAATCAAGAGA
CTTTCGCGAAGGTGGATATCCGTGTTCGTGTAAAGGGCGGCGGGCACACT
GCTCAGATCTATGCGATTCGACAGGCGATCTCCAAGGGCATCGTGGCTTT
TTATCAAAAGTATGTGGATGAGGCGAAGAAGAACGAGTTAAAAGAAACCC
TGCTTGCGTACGACAGGACCCTTCTAGTCGCCGATCCTCGGCACTGTGAG
CCCAAGAAGTTTGGGGGCCCATCTGCGCGGGCTCGGTATCAGAAGTCCTA
CCGCTAGTTCCGGAGAGGACATGCACGAGATGGAAAGAAGGTGGTGTAGA
GATCCAGGGCATGGTAATGAGTGGAGTTCGATAGTGCACTGGTGTGGGAG
GCGACGGATCCTTGGACGCAGCTATTCACCTTAGTGAGAATGGTGTCCAG
ACAGGGTTGGTGTGCGGGCGCCTGAGGGCGCAGGATTTCCGAGCAGACCG
CCAGGAGTGGTGGGTGAGATTGCGCTGCCATTATTGGAAGAAAACAATTT
GCGTTGAGCCACTTGATCACGTTCAAAACGTAAAAAGTGATTGTTGTGTC
TAGTCCGTTCGTCATGGTGGTCACGTCTCTCGATTTTGTTTCTTTGGAGC
TGGGTGAACACGTCATTAATCTCCTTGTTGAAGATTCATGCGACAAAACG
AGAGGGAATTTAGAACGCAACGACCGTATCTTGGAGTTTGCAATGAGAGA
GCTCACCCAAGAATTTATCCGTTTGTGGATTGCTTCAGGCGAGCCGTTAA
TCCATTTCTTTTCCAAGCACAGAAAAGCTC
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protein sequence of rna3530

>rna3530-protein ID=rna3530-protein|Name=rna3530|organism=Nannochloropsis gaditana|type=polypeptide|length=224bp
MPSKFDFSKGFGDLEKHLSTRSYIEGFSFSAADSSTFSALPSVPVASSHP
NAYRWYLHIASLTGLKKILGGDGRAVASASKKASAPAVATDDDDMDLFGD
DDEDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEV
NLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSID
DVVEKIEAMEDSVQSVDINSFNKL
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mRNA from alignment at CM002461.1:612645..613562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3530 ID=rna3530|Name=rna3530|organism=Nannochloropsis gaditana|type=mRNA|length=918bp|location=Sequence derived from alignment at CM002461.1:612645..613562+ (Nannochloropsis gaditana)
ATGCCCTCTAAGTTTGATTTTAGCAAAGGCTTCGGTGACCTAGAGAAGCA
TCTAAGCACGCGCTCGTACATCGAGGGTTTCTCCTTCAGCGCAGCGGACT
CATCGACCTTCAGCGCTCTTCCGTCCGTTCCtgtggcctcctcccaccct
aaTGCCTACCGGTGGTATCTGCACATTGCATCGCTTACAGGATTGAAAAA
GATTTTGGGTGGAGATGGCCGCGCCGTGGCCTCAGCCTCCAAGAAGGCGA
GCGCGCCTGCAGTGGCCACGGACGACGATGACATGGACCTTTTCGGGGAC
GACGATGTGAGTACACATTTCGGAAGAGTCTGCTTTGGTTCCTTGAGTCC
TTGCCATATGAGCCTCTAGGTCTCAAAAATTGTGATATGTGTAGTTGTTG
GATTGAAGCCAATCCCCGGGTGGCAACAGGGAGGCGTCACATGAGAACCT
CTTGTGTACTTCCGTAAGAAATGTGAGCTACATGTCACACCGCTCATCTA
CTTTTGATCCCTCATTTTGGTCCTGGTCTCGGGCTACCATTGTCAACAGG
AAGATTCATCGGCAAAGCCTACCATGTCTCGCGCCGAGCAAGTGGCAGCt
atgaaggcggagaaggaggctaaGGAAAAGGCCAACAAAAAGCGCGATCG
ATCTCAGATTGTTTTGGAAGTCAAACCAACTGATACAGAGGTAAATTTGG
ATGAACTCTATAAAACCATCAAGGAAGAAATTTGCCCGTCAGGCCTTACC
TGGGGCGAGGGCTACAACAAGTCACCGGTAGCCTTCGGCATCTTCAAATT
GATCATTTCCATGGTCGTGTACGACGACGAAGTCTCTATTGACGATGTTG
TGGAAAAGATTGAGGCCATGGAAGATAGCGTGCAGTCAGTGGACATCAAC
AGCTTCAACAAGCTGTAA
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Coding sequence (CDS) from alignment at CM002461.1:612645..613562+

>rna3530 ID=rna3530|Name=rna3530|organism=Nannochloropsis gaditana|type=CDS|length=1350bp|location=Sequence derived from alignment at CM002461.1:612645..613562+ (Nannochloropsis gaditana)
ATGCCCTCTAAGTTTGATTTTAGCAAAGGCTTCGGTGACCTAGAGAAGCA
TCTAAGCACGCGCTCGTACATCGAGGGTTTCTCCTTCAGCGCAGCGGACT
CATCGACCTTCAGCGCTCTTCCGTCCGTTCCtgtggcctcctcccaccct
aaTGCCTACCGGTGGTATCTGCACATTGCATCGCTTACAGGATTGAAAAA
GATTTTGGGTGGAGATGGCCGCGCCGTGGCCTCAGCCTCCAAGAAGGCGA
GCGCGCCTGCAGTGGCCACGGACGACGATGACATGGACCTTTTCGGGGAC
GACGATGAAGATTCATCGGCAAAGCCTACCATGTCTCGCGCCGAGCAAGT
GGCAGCtatgaaggcggagaaggaggctaaGGAAAAGGCCAACAAAAAGC
GCGATCGATCTCAGATTGTTTTGGAAGTCAAACCAACTGATACAGAGGTA
AATTTGGATGAACTCTATAAAACCATCAAGGAAGAAATTTGCCCGTCAGG
CCTTACCTGGGGCGAGGGCTACAACAAGTCACCGGTAGCCTTCGGCATCT
TCAAATTGATCATTTCCATGGTCGTGTACGACGACGAAGTCTCTATTGAC
GATGTTGTGGAAAAGATTGAGGCCATGGAAGATAGCGTGCAGTCAGTGGA
CATCAACAGCTTCAACAAGCTGTAAATGCCCTCTAAGTTTGATTTTAGCA
AAGGCTTCGGTGACCTAGAGAAGCATCTAAGCACGCGCTCGTACATCGAG
GGTTTCTCCTTCAGCGCAGCGGACTCATCGACCTTCAGCGCTCTTCCGTC
CGTTCCtgtggcctcctcccaccctaaTGCCTACCGGTGGTATCTGCACA
TTGCATCGCTTACAGGATTGAAAAAGATTTTGGGTGGAGATGGCCGCGCC
GTGGCCTCAGCCTCCAAGAAGGCGAGCGCGCCTGCAGTGGCCACGGACGA
CGATGACATGGACCTTTTCGGGGACGACGATGAAGATTCATCGGCAAAGC
CTACCATGTCTCGCGCCGAGCAAGTGGCAGCtatgaaggcggagaaggag
gctaaGGAAAAGGCCAACAAAAAGCGCGATCGATCTCAGATTGTTTTGGA
AGTCAAACCAACTGATACAGAGGTAAATTTGGATGAACTCTATAAAACCA
TCAAGGAAGAAATTTGCCCGTCAGGCCTTACCTGGGGCGAGGGCTACAAC
AAGTCACCGGTAGCCTTCGGCATCTTCAAATTGATCATTTCCATGGTCGT
GTACGACGACGAAGTCTCTATTGACGATGTTGTGGAAAAGATTGAGGCCA
TGGAAGATAGCGTGCAGTCAGTGGACATCAACAGCTTCAACAAGCTGTAA
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Synonyms
Publications