EWM27134.1, cds3521 (CDS) Nannochloropsis gaditana

Overview
NameEWM27134.1
Unique Namecds3521
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:612645..612950 +
Alignment locationCM002461.1:613194..613562 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27134.1
Productef-1 guanine nucleotide exchange domain-containing
Orig transcript idgnl|cribi|Naga_100010g89.6104.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:612645..612950 +
CM002461.1supercontigCM002461.1:613194..613562 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003746translation elongation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005853eukaryotic translation elongation factor 1 complex
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: INTERPRO
TermDefinition
IPR001326Transl_elong_EF1B_B/D_CS
IPR010987Glutathione-S-Trfase_C-like
IPR014717Transl_elong_EF1B/ribosomal_S6
IPR014038Transl_elong_fac_EF1B_bsu/dsu
Homology
BLAST of EWM27134.1 vs. NCBI_GenBank
Match: gi|585109314|gb|EWM27134.1| (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 454.907 bits (1169), Expect = 6.595e-162
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query:    1 MPSKFDFSKGFGDLEKHLSTRSYIEGFSFSAADSSTFSALPSVPVASSHPNAYRWYLHIASLTGLKKILGGDGRAVASASKKASAPAVATDDDDMDLFGDDDEDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224
            MPSKFDFSKGFGDLEKHLSTRSYIEGFSFSAADSSTFSALPSVPVASSHPNAYRWYLHIASLTGLKKILGGDGRAVASASKKASAPAVATDDDDMDLFGDDDEDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL
Sbjct:    1 MPSKFDFSKGFGDLEKHLSTRSYIEGFSFSAADSSTFSALPSVPVASSHPNAYRWYLHIASLTGLKKILGGDGRAVASASKKASAPAVATDDDDMDLFGDDDEDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224          
BLAST of EWM27134.1 vs. NCBI_GenBank
Match: gi|585105124|gb|EWM23852.1| (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 189.889 bits (481), Expect = 9.778e-58
Identity = 108/122 (88.52%), Postives = 117/122 (95.90%), Query Frame = 0
Query:  103 EDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224
            ED + K TMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDT+V+LD LYKTIK+E+CP GLTWGEGYNK+PVAFGIFKLIIS+VV+DDEVSIDDVV+KIEAMEDSVQSVDINSFNKL
Sbjct:   68 EDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189          
BLAST of EWM27134.1 vs. NCBI_GenBank
Match: gi|553182754|ref|XP_005853780.1| (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana CCMP526] >gi|422295281|gb|EKU22580.1| ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 188.734 bits (478), Expect = 1.791e-57
Identity = 108/122 (88.52%), Postives = 117/122 (95.90%), Query Frame = 0
Query:  103 EDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224
            ED + K TMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDT+V+LD LYKTIK+E+CP GLTWGEGYNK+PVAFGIFKLIIS+VV+DDEVSIDDVV+KIEAMEDSVQSVDINSFNKL
Sbjct:   47 EDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 168          
BLAST of EWM27134.1 vs. NCBI_GenBank
Match: gi|501751672|emb|CCG84137.1| (protein of unknown function [Taphrina deformans PYCC 5710])

HSP 1 Score: 151.754 bits (382), Expect = 3.068e-42
Identity = 97/230 (42.17%), Postives = 130/230 (56.52%), Query Frame = 0
Query:    5 FDFSKGFGDLEKHLSTRSYIEGFSFSAADSSTFSALPSVPVASSHPNAYRWYLHIASLTGLKKILGGDG---------RAVASASKKASAPAVATDDDDMDLFG-DDDEDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224
            FD S     LE HL+TRSYIEGF  S AD + F+ L + P AS +P+A RWY HIAS T     L GD             AS + K +APA   D+DD+DLFG DDDE+        R +++A   A+K  KEK   K   S + ++VKP D E ++ EL  +++  I   GL WG G    PV +G+ KL I++V+ DD+V +DD+ + I   ED VQS DI +  KL
Sbjct:    3 FDLSSSISGLESHLATRSYIEGFEPSQADVALFNELKTAPSASEYPHAARWYEHIASYTEEHGSLPGDSSKPYSSYGPETSASEATKEAAPAA--DEDDIDLFGSDDDEEEDQAAIDLREKRLAEYAAKKAGKEKPAAK---SVVTMDVKPWDDETDMKELEASVR-SITMDGLVWGGG-KLVPVGYGVSKLQINLVIEDDKVGLDDLQDAIAEFEDYVQSSDIAAMQKL 225          
BLAST of EWM27134.1 vs. NCBI_GenBank
Match: gi|219126454|ref|XP_002183472.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405228|gb|EEC45172.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 142.124 bits (357), Expect = 3.449e-38
Identity = 94/223 (42.15%), Postives = 133/223 (59.64%), Query Frame = 0
Query:    4 KFDFS--KGFGDLEKHLSTRSYIEGFSFSAADSSTFSALPSVPVASSHPNAYRWYLHIASLTGLKKILGGDGRAVASASKKASAPAVATDDDDMDLFGDDDEDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224
            +FD S  KG       + ++SYIEG+SFS ADS  F+   SVP A+  P++YRWY+H+A+L G++   G +    A A+  A A A A  +D+ D+FGDDDE    +P  SRA+ +A +K E E +    +   R+ + +E+KP D E +L  L+K I E I   GL WGE  N + VA+GI K+  + V+  +  S DDVVEKI  MED VQS ++ S N L
Sbjct:   39 QFDVSSDKGAAAFNGFMGSKSYIEGWSFSPADSEMFAKFESVPDAAKFPHSYRWYIHVAALQGVR---GLNLSPPAPAAAAAPAAAKADAEDEFDVFGDDDE-EDDEPKESRADMLARLKKEAEERTAKKEANQRTLVAIEIKPWDVEQDLMVLWKKITETIVQDGLKWGESCNLADVAYGIKKIQCTFVMGVNNSS-DDVVEKILEMEDEVQSCEVTSMNVL 256          
BLAST of EWM27134.1 vs. NCBI_GenBank
Match: gi|953488825|emb|CEG47691.1| (ef-1 guanine nucleotide exchange domain-containing [Plasmopara halstedii])

HSP 1 Score: 140.584 bits (353), Expect = 5.653e-38
Identity = 95/216 (43.98%), Postives = 131/216 (60.65%), Query Frame = 0
Query:   10 GFGDLEKHLSTRSYIEGFSFSAADSSTFSALPSVPVASSHPNAYRWYLHIASLTGLKKILGGDGRAVASASKKASAPA-VATDDDDMDLFGDDDEDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224
            G   L   L++RSYIEGF FS+AD+  F    SVP A+ + N YRWY+H+A+  GL+ IL    + V + +K A A + V  DD + D     D+D       ++A      +A K AK++  K  +RSQ+V+EVKP + E +L+EL   IK  +   GL+WGEG+   PVAFGI KL++  V+ D+ V +DD+ E IEA ED VQSVDI S NKL
Sbjct:   13 GLKKLNGFLTSRSYIEGFKFSSADADLFHKFLSVPDAAKYANVYRWYVHVAARLGLRAILV--TKKVTATTKAAVASSKVVKDDGNDDDDLFGDDDEDEDDEAAKALAAKRAEAAKAAKKEKKKPVERSQVVIEVKPWEAETDLEELAVKIK-ALPIEGLSWGEGHKLVPVAFGIKKLLVQCVIVDELVLLDDITEAIEAFEDYVQSVDIASMNKL 225          
BLAST of EWM27134.1 vs. NCBI_GenBank
Match: gi|673041401|ref|XP_008874661.1| (hypothetical protein H310_10160 [Aphanomyces invadans] >gi|574469871|gb|ETV96884.1| hypothetical protein H310_10160 [Aphanomyces invadans])

HSP 1 Score: 140.969 bits (354), Expect = 6.556e-38
Identity = 99/228 (43.42%), Postives = 128/228 (56.14%), Query Frame = 0
Query:   10 GFGDLEKHLSTRSYIEGFSFSAADSSTFSALPSVPVASSHPNAYRWYLHIASLTGLKKILGGDGRAVAS-----ASKKASAPAVATDDDDMDLFGDDDEDSSAKPTMSRAEQVAAMKAEKEAKEKANKKR-------DRSQIVLEVKPTDTEVNLDELYKTIKE-EICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224
            G   L   L+ +SYIEGF FSAADS+ F+   +VP A+  PN YRWY+HIAS  GL+  L     + A      A+ K S P  +T         DDD+D           + AA +A K+  E A   +       +RSQ+VLEVKP + E +L EL   IK  EI  +GL WGEG+   PVAFGI KL+I  ++ DD V +DD+ E IEA ED VQSVD+ S NK+
Sbjct:   11 GLKKLNGFLTAKSYIEGFQFSAADSALFAKFNAVPDAAKVPNVYRWYIHIASKLGLRVALAARTPSAAKPSTPKAAAKPSTPKASTPKGKKPAADDDDDDLFGDDDDDEEAEAAAKEAAKKRAEAAKAGKKEKAKPVERSQVVLEVKPWEAETDLVELAGKIKALEI--NGLNWGEGHKLVPVAFGIKKLLIQCIIVDDLVLLDDITEAIEAFEDYVQSVDVASMNKV 236          
BLAST of EWM27134.1 vs. NCBI_GenBank
Match: gi|325186356|emb|CCA20862.1| (EF1 guanine nucleotide exchange domaincontaining protein putative [Albugo laibachii Nc14])

HSP 1 Score: 138.658 bits (348), Expect = 2.882e-37
Identity = 99/230 (43.04%), Postives = 137/230 (59.57%), Query Frame = 0
Query:    1 MPSKF---DFSKGFGDLEKHLSTRSYIEGFSFSAADSSTFSALPSVPVASSHPNAYRWYLHIASLTGLKKILGGDGRAVASASKKASAPAVATDDDDMDLFGDDDEDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDEL---YKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224
            MP +F   D  +G   L   L+++SYIEG+S S AD + F  +PS P  S +PN YRWY+HIAS  G++ +  G    +A            T++DD DLFGDDD++ +A+    RAE     K  K  K+      +RSQ+V+EVKP D E +L+ L    K+ K+E    GLTWGEG+    VA+GI KL++  V+ DD VS++D+ + IE  EDSVQSVDI S NK+
Sbjct:    1 MPMQFTQLDKPEGLKKLNGFLTSKSYIEGYSLSDADLTLFKQIPSCPEPSQYPNVYRWYVHIASKFGVRALWSG----IAPKKTPTEPSKTQTEEDDDDLFGDDDDEEAAEAAKKRAETAKNAKEAKNKKKVV----ERSQVVVEVKPWDKETDLEALAIKIKSTKKE----GLTWGEGHKLVDVAYGIKKLLVQCVILDDMVSLEDITDIIEQFEDSVQSVDIASMNKI 218          
BLAST of EWM27134.1 vs. NCBI_GenBank
Match: gi|646302746|gb|KDQ23895.1| (hypothetical protein PLEOSDRAFT_1067950 [Pleurotus ostreatus PC15])

HSP 1 Score: 137.887 bits (346), Expect = 5.522e-37
Identity = 94/214 (43.93%), Postives = 125/214 (58.41%), Query Frame = 0
Query:   14 LEKHLSTRSYIEGFSFSAADSSTFSALPSVPVASSHPNAYRWYLHIASLTGLKKILGGD---GRAVASASKKASAPAVATDDDDMDLFGDDDEDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224
            LE+HL++RSY+EG++ S AD   F A+ S P AS+ P+  RWY HI S       L G    G A      +A A A A DDDD+DLFG DDE+ +A+    +AE+VAA  A+K  K K   K   S + LEVKP D E ++  L K ++  I   GL WG      P+ +GI KL I++VV D++VS D++ EKI   ED VQS DI +  KL
Sbjct:    7 LEQHLASRSYVEGYAPSQADVHVFKAIASAPDASAQPHVARWYNHIKSYAAEHDSLPGSSTAGEAFVGGDAEAPAGAAADDDDDVDLFGSDDEEDNAEAERIKAERVAAYNAKKAGKAKTVAK---SVVTLEVKPWDDETDMAALEKAVR-SIEQDGLLWGSS-KLVPIGYGIRKLQITLVVEDEKVSTDELQEKIAEFEDYVQSTDIAAMQKL 215          
BLAST of EWM27134.1 vs. NCBI_GenBank
Match: gi|449543926|gb|EMD34900.1| (hypothetical protein CERSUDRAFT_85667 [Gelatoporia subvermispora B])

HSP 1 Score: 137.502 bits (345), Expect = 7.387e-37
Identity = 95/217 (43.78%), Postives = 128/217 (58.99%), Query Frame = 0
Query:   11 FGDLEKHLSTRSYIEGFSFSAADSSTFSALPSVPVASSHPNAYRWYLHIASLTGLKKILGGD---GRAVASASKKASAPAVATDDDDMDLFGDDDEDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224
            F  LE HL++RSY+EG++ S AD   F A+ SVP AS++P+  RWY HIAS       L G    G A    +  A A A   DDD++DLFG DDE+  A+    +AE+VAA +A+K  K K   K   S + LEVKP D E ++  L ++++  I   GL WG      PV +G+ KL I++VV D+ VS+DD+ EKI   ED VQS DI +  KL
Sbjct:    5 FTKLESHLASRSYVEGYTPSQADVHVFKAITSVPSASAYPHIARWYTHIASYASEHASLPGSSTAGEAFFGTAAAAPAAAAEEDDDEVDLFGSDDEE-DAEAERIKAERVAAYQAKKANKPKTIAK---SVVTLEVKPWDDETDMAALEESVR-SIEMEGLVWGAS-KLVPVGYGVRKLQITLVVEDELVSLDDLQEKIAEFEDYVQSSDIAAMQKL 215          
The following BLAST results are available for this feature:
BLAST of EWM27134.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109314|gb|EWM27134.1|6.595e-162100.00ef-1 guanine nucleotide exchange domain-containing... [more]
gi|585105124|gb|EWM23852.1|9.778e-5888.52ef-1 guanine nucleotide exchange domain-containing... [more]
gi|553182754|ref|XP_005853780.1|1.791e-5788.52ef-1 guanine nucleotide exchange domain-containing... [more]
gi|501751672|emb|CCG84137.1|3.068e-4242.17protein of unknown function [Taphrina deformans PY... [more]
gi|219126454|ref|XP_002183472.1|3.449e-3842.15predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|953488825|emb|CEG47691.1|5.653e-3843.98ef-1 guanine nucleotide exchange domain-containing... [more]
gi|673041401|ref|XP_008874661.1|6.556e-3843.42hypothetical protein H310_10160 [Aphanomyces invad... [more]
gi|325186356|emb|CCA20862.1|2.882e-3743.04EF1 guanine nucleotide exchange domaincontaining p... [more]
gi|646302746|gb|KDQ23895.1|5.522e-3743.93hypothetical protein PLEOSDRAFT_1067950 [Pleurotus... [more]
gi|449543926|gb|EMD34900.1|7.387e-3743.78hypothetical protein CERSUDRAFT_85667 [Gelatoporia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3530rna3530Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications