rna353, rna353 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna353
Unique Name	rna353
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1023
Alignment location	CM002455.1:862183..865776 +

Link to JBrowse

Properties


Property Name	Value
Product	dna-directed rna polymerase iii subunit rpc2
Orig transcript id	gnl\|cribi\|Naga_100003g143.1749.mrna
Orig protein id	gnl\|cribi\|Naga_100003g143.1749
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:862183..865776 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g143	gene340	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna353	rna353-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30232.1	cds353	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:862183..865776+
coding sequence from alignment at CM002455.1:862183..865776+

mRNA sequence

>rna353 ID=rna353|Name=rna353|organism=Nannochloropsis gaditana|type=mRNA|length=1023bp
ATGCGTCGGCTAAACTATTTATCCTCCTTCAGAGGTGACCCAAACGCTGC
CTCGCTCCGTCTGATAGCTTTTTCAAGTTTCTCAATCTACCATTCGGCAG
CCATATGTGTCAATTGTCAGGCAAGGCCCAGCACTGATACGTGGTGCTTA
AAAACCGAGGGCATGCACGTACCGCTGCTCCATGGCAAACGAGATGGGGC
GGAAGTTGCCACTAACCTTTACAATAGAATCGATGAGAAAGTCGACCACA
GTGACACTCAAGAAGGCGCTGACTGCATTAATGCTCAAGTGCCACGTCAA
AACGATCGCGGCCTTCGTATGCTCCAAAAGGCGTCAAGAGAGGTTGTAGC
CTTTCTTGTGCTAATCATGGCAGGCATCGTTATGGGTCTAGCATTGCCGA
GAAACAAAGAGCTCCGTAACGAGGGCTACGCCACGCTTTCAAATATATTA
GGATGGATTTATTTTTTGGCCTGGACAGTTTCATTTTACCCGCAAATTTT
TCTCAATTGGAGGCAACGGAATACAGAAGGACTGTCTCTTGGCTTTGAGC
TTCTCAACCTCCTAGGGTTTCTCTTTTACAGCGTATATGCGCTTTCTTTC
TTCTTGCTCCCACAGATTCAAGAAGCATACAGAAAACGACATAACGGACA
CGAGAACAAGGTGACAATTCAAGACGTGGTCTTCGCATGTCATGCTACAA
TTCTTACTGCTTTGACAGTCGCCCAAATGCTTCACTATGATGGCATAAGA
ATCTATCGGCGACTCTCGTGGCCTATCTTAATGGTCCTGACAGGATTGCT
GGTCATTACTTGTGTAGCTTTAGTGGTAGTAAGTGCGAGAGGAGATGGGC
CCTCTGATTGGCTGCTTTATTTATATACCATATCCTTCATGAAGCTATTT
GTAAGTGTCATCAAAGGCGTGCCCCAGGCCTTTTTAAATTATCGGCGTAA
GTCCACTGTAGGATGGTCGATTCACAATGTACTTTGCGACTTTACAGGTA
CGCAGGAAATTATGACGGGTTGA

protein sequence of rna353

>rna353-protein ID=rna353-protein|Name=rna353|organism=Nannochloropsis gaditana|type=polypeptide|length=1197bp
MAPPSAENCSSGIKASNASNLGSNFFFTELADQSQEDVSKPVTDVADKWK
LLPHFLQLRGLMRQHIDSFDFFVNREIKDIVNAASNRELRSEADPKFWLR
YTDVHVGEPSVDDDAYVSSRVTPFQCRLRDCTYSAPITVDVRYTRGRQIV
VKRGVMIGRIPIMLRSCKCILAGRSEAELAEKKECPYDPGGYFIVKGVER
VILMQEQLSKNRVIIEEDNKGNVSASITSSTHDRKGRSNIFVKNGTKVYL
KNNLLGDDVPIVVVLKAMGMQSDQEIVCMVGDSPEMLDAFAPSLEEPYHL
GICTQAQALRYIGAKIRNTTQNRGPGPSGMGFAFYRRASSPEEEAREVLA
SVILNHVPVINFDFRTKCIFVCHVIRRVLLTHRDRSQLDDKDYYGNKRLE
LAGQLLSLLFEDLFKRLNVQLKKQADQGLSKPNRTQSFDVIKCIRTDTIT
NGFIQAIATGNWKLQRFRMDRQGVTQVLTRLSYISCLGMMTRINSQFEKT
RKVSGPRSLQPSQWGMICPADTPEGEACGLVKNLALLAHVTTDEESEPIR
KLCFDLGIEDVTLLSGAEINASSNYLVFLNGLIVGCHSRPLRFVRLLRLL
RRKGLVAEFVSVCLHEVQRAIYIATDGGRVCRPLLVCEKGVPRLTNMMMR
QLSSGLLTLAELIRCGVVEYVDVNEENNCLIALAQTQLTVKHTHMEIDPL
TVLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTVALNQYERLDSLLYAM
VYPQKPLVTTRTLDLVNFNELPGGQNAIVAVMSYSGYDIEDAVVLNKASL
DRGFGRCLILRKHQTSLRKYANGAADNLRGPPEDTAAVCSGMGGEPSAAQ
SNLAGAYSIRRDPRLRRFEALDKDGICQVGERLGNGSVMINKESPISVAD
LNMGSGADPTPFKPTPLSYKGPAPSHVDQVLITSNEGGDLLVKVSVRQCR
RPEVGDKFSSRHGQKGVCGIIVAQEDMPFNDDGICPDLIMNPHGFPSRMT
VGKLIEFVAGKASVMIGRQAYGTAFGEDFGSADRVVACSGALVENGFSYV
GKEIITSGTSGEPLLTYIFQGPVFYQKLKHMVMDKMHARARGPRAVLTRQ
PTEGRSRDGGLRLGEMERDCLIGYGASSLLTERLMISSDAFTATVCERCG
LLGYAGWCQSCRSSERMADIRLPYACKLLFQELQSMNVIPKLKLMEF

mRNA from alignment at CM002455.1:862183..865776+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna353 ID=rna353|Name=rna353|organism=Nannochloropsis gaditana|type=mRNA|length=3594bp|location=Sequence derived from alignment at CM002455.1:862183..865776+ (Nannochloropsis gaditana)
ATGGCACCACCAAGCGCGGAAAATTGCAGCAGCGGGATTAAAGCTTCAAA
TGCTAGTAATTTGGGATCAAACTTTTTCTTCACGGAGCTAGCGGACCAAT
CACAAGAAGATGTGAGTAAGCCTGTGACAGACGTTGCCGATAAGTGGAAG
TTGCTGCCCCATTTTTTGCAGCTCCGGGGCCTGATGCGTCAACATATCGA
TTCCTTCGACTTTTTCGTCAACCGTGAGATCAAAGATATTGTGAACGCCG
CATCCAATCGTGAATTGCGCTCAGAAGCTGATCCTAAGTTTTGGCTGCGT
TATACGGACGTGCACGTAGGTGAACCGTCCGTAGACGACGACGCTTACGT
GAGCTCCCGGGTGACCCCCTTCCAGTGCCGCCTTCGAGACTGCACTTACT
CGGCACCCATTACTGTGGATGTCCGATATACGAGGGGGAGACAGATAGTG
GTGAAGCGCGGAGTCATGATCGGACGGATCCCTATTATGCTCCGGTCCTG
CAAGTGCATCTTGGCTGGGAGAAGTGAGGCCGAGTTGGCcgaaaaaaaag
aatgcCCTTATGATCCAGGGGGCTACTTTATTGTAAAAGGCGTGGAAAGA
GTAATACTGATGCAAGAGCAACTGAGCAAAAATCGCGTTATCATCGAAGA
AGATAACAAGGGCAACGTCAgcgcctccatcacgtcctcaaCGCATGACA
GGAAAGGGCGCTCGAATATTTTTGTCAAAAATGGAACCAAAGTCTACCTG
AAGAATAACTTGCTTGGGGACGATGTTCCAATTGTTGTGGTGCTGAAGGC
GATGGGAATGCAGTCGGATCAGGAGATCGTATGTATGGTCGGAGACTCTC
CCGAAATGTTGGACGCGTTCGCTCCTTCGTTGGAAGAGCCTTATCATCTA
GGAATCTGTACCCAAGCGCAAGCTCTTAGATATATTGGAGCCAAAATTCG
GAACACTACACAGAACCGAGGACCGGGTCCGTCTGGCATGGGTTTCGCGT
TCTACCGACGGGCCAGCTctccggaggaggaagctcggGAAGTGCTTGCG
TCGGTAATTCTTAATCATGTGCCAGTCATAAACTTTGACTTTCGAACCAA
ATGCATTTTTGTGTGCCACGTCATCAGGCGCGTGCTTCTTACGCACAGGG
ACCGCAGCCAACTCGACGATAAGGACTACTACGGGAACAAGAGACTGGAG
CTGGCTGGGCAACTGCTTTCGCTCCTTTTTGAGGATCTTTTCAAGCGCTT
GAATGTGCAACTGAAGAAACAGGCAGATCAGGGCCTGAGCAAGCCAAATC
GGACGCAAAGTTTCGACGTGATTAAATGCATCCGGACAGATACGATCACG
AATGGTTTTATTCAAGCCATCGCAACTGGAAATTGGAAGCTTCAGCGTTT
CCGAATGGATCGACAAGGTGTAACGCAAGTTTTAACACGGCTTTCGTACA
TTTCGTGTTTGGGTATGATGACACGAATCAATTCTCAGTTTGAGAAAACA
CGAAAAGTCTCAGGTCCCCGCTCCCTTCAACCTTCTCAATGGGGCATGAT
CTGTCCGGCAGACACGCCTGAGGGCGAGGCATGCGGTCTGGTGAAAAACT
TGGCCTTGCTCGCTCATGTCACGACTGACGAAGAGAGCGAGCCCATCCGT
AAACTATGCTTCGATCTTGGGATCGAGGATGTGACGCTTTTGAGCGGGGC
GGAGATAAACGCCTCAAGCAATTACCTCGTTTTTCTGAACGGACTCATCG
TTGGATGCCATTCAAGACCCTTGCGATTTGTCCGCCTGTTACGTCTGTTG
CGCAGGAAAGGGTTGGTAGCCGAGTTTGTGTCTGTGTGTCTACATGAAGT
TCAGCGTGCAATTTACATTGCCACAGACGGTGGCAGGGTCTGTCGCCCTC
TTTTGGTTTGTGAAAAGGGCGTGCCCCGTCTTACAAACATGATGATGCGC
CAGCTCTCATCAGGCCTTCTGACTTTGGCAGAGCTCATTCGATGCGGTGT
TGTGGAGTACGTGGACGTGAACGAGGAAAATAATTGTTTAATAGCTCTTG
CTCAGACTCAACTGACAGTCAAGCACACACACATGGAGATCGATCCTTTG
ACTGTGCTTGGCGTAGTAGCTGGGTTGATACCTTACCCACATCATAATCA
GTCTCCGCGAAATACGTACCAGTGTGCCATGGGAAAACAAGCGATGGGCA
CAGTCGCGCTCAATCAGTACGAACGTTTAGACTCGCTTCTGTACGCTATG
GTATATCCACAAAAACCTTTGGTGACCACGCGCACATTGGATCTTGTAAA
TTTTAATGAACTTCCAGGCGGTCAAAATGCCATCGTGGCTGTCATGTCTT
ACTCTGGCTACGACATAGAGGATGCCGTTGTGCTCAACAAAGCTAGTCTG
GACCGCGGTTTCGGTCGATGTCTCATACTTCGCAAGCATCAGACATCTCT
TCGTAAGTATGCTAATGGTGCAGCCGACAACCTTAGAGGCCCACCCGAGG
ATACGGCAGCGGTATGTTCGGGGATGGGTGGGGAACCAAGCGCGGCACAA
TCAAATTTAGCTGGAGCATATTCAATTCGACGGGATCCACGATTACGACG
CTTTGAGGCGTTGGATAAGGATGGAATCTGTCAGGTGGGAGAGCGGCTCG
GAAATGGATCAGTTATGATCAATAAGGAGTCGCCAATATCTGTGGCAGAT
TTGAACATGGGAAGTGGAGCAGATCCGACGCCTTTCAAACCCACACCACT
TTCGTACAAAGGTCCCGCCCCCAGCCACGTGGATCAGGTTCTAATTACTT
caaacgaaggaggagacttgCTTGTGAAGGTCAGTGTGCGACAGTGTCGA
CGACCGGAAGTTGGCGACAAATTTTCCAGTCGGCACGGCCAAAAGGGCGT
TTGTGGAATCATTGTAGCACAAGAAGACATGCCATTTAACGATGACGGAA
TATGTCCGGATCTTATCATGAATCCACacggctttccctcccggaTGACC
GTTGGGAAACTTATCGAATTCGTGGCGGGTAAGGCAAGCGTTATGATCGG
ACGGCAGGCATATGGGACAGCGTTTGGGGAAGACTTTGGAAGCGCTGATC
GGGTTGTGGCTTGCTCTGGCGCTTTGGTTGAAAATGGCTTCAGTTATGTT
GGCAAAGAGATCATCACGAGTGGCACAAGTGGGGAACCGCTACTCACATA
TATATTTCAAGGGCCCGTTTTTTATCAAAAACTCAAACATATGGTGATGG
ACAAGATGCATGCTCGCGCCCGCGGCCCCAGGGCAGTGCTGACGCGACAG
CCTACGGAGGGACGGTCACGGGACGGGGGGTTGCGGCTCGGAGAAATGGA
GCGTGATTGTTTAATCGGGTATGGAGCTTCTTCATTACTCACTGAGCGGC
TCATGATTTCTTCCGATGCTTTCACTGCCACGGTTTGCGAAAGATGTGGC
TTATTGGGGTATGCTGGGTGGTGTCAAAGCTGTAGGTCGTCAGAAAGAAT
GGCCGACATTCGTCTCCCCTACGCCTGCAAGCTTCTTTTTCAGGAACTCC
AGAGCATGAATGTTATCCCAAAATTAAAGCTGATGGAGTTTTAA

Coding sequence (CDS) from alignment at CM002455.1:862183..865776+

>rna353 ID=rna353|Name=rna353|organism=Nannochloropsis gaditana|type=CDS|length=3594bp|location=Sequence derived from alignment at CM002455.1:862183..865776+ (Nannochloropsis gaditana)
ATGGCACCACCAAGCGCGGAAAATTGCAGCAGCGGGATTAAAGCTTCAAA
TGCTAGTAATTTGGGATCAAACTTTTTCTTCACGGAGCTAGCGGACCAAT
CACAAGAAGATGTGAGTAAGCCTGTGACAGACGTTGCCGATAAGTGGAAG
TTGCTGCCCCATTTTTTGCAGCTCCGGGGCCTGATGCGTCAACATATCGA
TTCCTTCGACTTTTTCGTCAACCGTGAGATCAAAGATATTGTGAACGCCG
CATCCAATCGTGAATTGCGCTCAGAAGCTGATCCTAAGTTTTGGCTGCGT
TATACGGACGTGCACGTAGGTGAACCGTCCGTAGACGACGACGCTTACGT
GAGCTCCCGGGTGACCCCCTTCCAGTGCCGCCTTCGAGACTGCACTTACT
CGGCACCCATTACTGTGGATGTCCGATATACGAGGGGGAGACAGATAGTG
GTGAAGCGCGGAGTCATGATCGGACGGATCCCTATTATGCTCCGGTCCTG
CAAGTGCATCTTGGCTGGGAGAAGTGAGGCCGAGTTGGCcgaaaaaaaag
aatgcCCTTATGATCCAGGGGGCTACTTTATTGTAAAAGGCGTGGAAAGA
GTAATACTGATGCAAGAGCAACTGAGCAAAAATCGCGTTATCATCGAAGA
AGATAACAAGGGCAACGTCAgcgcctccatcacgtcctcaaCGCATGACA
GGAAAGGGCGCTCGAATATTTTTGTCAAAAATGGAACCAAAGTCTACCTG
AAGAATAACTTGCTTGGGGACGATGTTCCAATTGTTGTGGTGCTGAAGGC
GATGGGAATGCAGTCGGATCAGGAGATCGTATGTATGGTCGGAGACTCTC
CCGAAATGTTGGACGCGTTCGCTCCTTCGTTGGAAGAGCCTTATCATCTA
GGAATCTGTACCCAAGCGCAAGCTCTTAGATATATTGGAGCCAAAATTCG
GAACACTACACAGAACCGAGGACCGGGTCCGTCTGGCATGGGTTTCGCGT
TCTACCGACGGGCCAGCTctccggaggaggaagctcggGAAGTGCTTGCG
TCGGTAATTCTTAATCATGTGCCAGTCATAAACTTTGACTTTCGAACCAA
ATGCATTTTTGTGTGCCACGTCATCAGGCGCGTGCTTCTTACGCACAGGG
ACCGCAGCCAACTCGACGATAAGGACTACTACGGGAACAAGAGACTGGAG
CTGGCTGGGCAACTGCTTTCGCTCCTTTTTGAGGATCTTTTCAAGCGCTT
GAATGTGCAACTGAAGAAACAGGCAGATCAGGGCCTGAGCAAGCCAAATC
GGACGCAAAGTTTCGACGTGATTAAATGCATCCGGACAGATACGATCACG
AATGGTTTTATTCAAGCCATCGCAACTGGAAATTGGAAGCTTCAGCGTTT
CCGAATGGATCGACAAGGTGTAACGCAAGTTTTAACACGGCTTTCGTACA
TTTCGTGTTTGGGTATGATGACACGAATCAATTCTCAGTTTGAGAAAACA
CGAAAAGTCTCAGGTCCCCGCTCCCTTCAACCTTCTCAATGGGGCATGAT
CTGTCCGGCAGACACGCCTGAGGGCGAGGCATGCGGTCTGGTGAAAAACT
TGGCCTTGCTCGCTCATGTCACGACTGACGAAGAGAGCGAGCCCATCCGT
AAACTATGCTTCGATCTTGGGATCGAGGATGTGACGCTTTTGAGCGGGGC
GGAGATAAACGCCTCAAGCAATTACCTCGTTTTTCTGAACGGACTCATCG
TTGGATGCCATTCAAGACCCTTGCGATTTGTCCGCCTGTTACGTCTGTTG
CGCAGGAAAGGGTTGGTAGCCGAGTTTGTGTCTGTGTGTCTACATGAAGT
TCAGCGTGCAATTTACATTGCCACAGACGGTGGCAGGGTCTGTCGCCCTC
TTTTGGTTTGTGAAAAGGGCGTGCCCCGTCTTACAAACATGATGATGCGC
CAGCTCTCATCAGGCCTTCTGACTTTGGCAGAGCTCATTCGATGCGGTGT
TGTGGAGTACGTGGACGTGAACGAGGAAAATAATTGTTTAATAGCTCTTG
CTCAGACTCAACTGACAGTCAAGCACACACACATGGAGATCGATCCTTTG
ACTGTGCTTGGCGTAGTAGCTGGGTTGATACCTTACCCACATCATAATCA
GTCTCCGCGAAATACGTACCAGTGTGCCATGGGAAAACAAGCGATGGGCA
CAGTCGCGCTCAATCAGTACGAACGTTTAGACTCGCTTCTGTACGCTATG
GTATATCCACAAAAACCTTTGGTGACCACGCGCACATTGGATCTTGTAAA
TTTTAATGAACTTCCAGGCGGTCAAAATGCCATCGTGGCTGTCATGTCTT
ACTCTGGCTACGACATAGAGGATGCCGTTGTGCTCAACAAAGCTAGTCTG
GACCGCGGTTTCGGTCGATGTCTCATACTTCGCAAGCATCAGACATCTCT
TCGTAAGTATGCTAATGGTGCAGCCGACAACCTTAGAGGCCCACCCGAGG
ATACGGCAGCGGTATGTTCGGGGATGGGTGGGGAACCAAGCGCGGCACAA
TCAAATTTAGCTGGAGCATATTCAATTCGACGGGATCCACGATTACGACG
CTTTGAGGCGTTGGATAAGGATGGAATCTGTCAGGTGGGAGAGCGGCTCG
GAAATGGATCAGTTATGATCAATAAGGAGTCGCCAATATCTGTGGCAGAT
TTGAACATGGGAAGTGGAGCAGATCCGACGCCTTTCAAACCCACACCACT
TTCGTACAAAGGTCCCGCCCCCAGCCACGTGGATCAGGTTCTAATTACTT
caaacgaaggaggagacttgCTTGTGAAGGTCAGTGTGCGACAGTGTCGA
CGACCGGAAGTTGGCGACAAATTTTCCAGTCGGCACGGCCAAAAGGGCGT
TTGTGGAATCATTGTAGCACAAGAAGACATGCCATTTAACGATGACGGAA
TATGTCCGGATCTTATCATGAATCCACacggctttccctcccggaTGACC
GTTGGGAAACTTATCGAATTCGTGGCGGGTAAGGCAAGCGTTATGATCGG
ACGGCAGGCATATGGGACAGCGTTTGGGGAAGACTTTGGAAGCGCTGATC
GGGTTGTGGCTTGCTCTGGCGCTTTGGTTGAAAATGGCTTCAGTTATGTT
GGCAAAGAGATCATCACGAGTGGCACAAGTGGGGAACCGCTACTCACATA
TATATTTCAAGGGCCCGTTTTTTATCAAAAACTCAAACATATGGTGATGG
ACAAGATGCATGCTCGCGCCCGCGGCCCCAGGGCAGTGCTGACGCGACAG
CCTACGGAGGGACGGTCACGGGACGGGGGGTTGCGGCTCGGAGAAATGGA
GCGTGATTGTTTAATCGGGTATGGAGCTTCTTCATTACTCACTGAGCGGC
TCATGATTTCTTCCGATGCTTTCACTGCCACGGTTTGCGAAAGATGTGGC
TTATTGGGGTATGCTGGGTGGTGTCAAAGCTGTAGGTCGTCAGAAAGAAT
GGCCGACATTCGTCTCCCCTACGCCTGCAAGCTTCTTTTTCAGGAACTCC
AGAGCATGAATGTTATCCCAAAATTAAAGCTGATGGAGTTTTAA

Synonyms

Publications