rna3526, rna3526 (mRNA) Nannochloropsis gaditana

Overview
Namerna3526
Unique Namerna3526
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1972
Alignment locationCM002461.1:607583..608364 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g84.6108.mrna
Orig protein idgnl|cribi|Naga_100010g84.6108
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:607583..608364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g84gene3396Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3526rna3526-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27138.1cds3517Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3526 ID=rna3526|Name=rna3526|organism=Nannochloropsis gaditana|type=mRNA|length=1972bp
AGGAACTTTCCCAAAGAAACTTCTTAGAAACAATGTGGCAGATGCCAGTT
TGGTCACTTACGGTACCCGAGTATTCCTGCTTCCATGGAGTGCGGAGAAT
CATTTGAATTCTACTTGAAAAGCTGTTAACTTCGCGTATGACAGATTTGT
CAGAGAATTGAGGTCATTAATTTCTCCGTTTCCAAGGCAAGAGGCGACGA
AATCTCACACTGGATGAGCCGGGAGATCAGTTTCATCAGTAAATTTACGG
ACCTACTCGAAAACATTACAACAAAACAGCGTAAAAATGAATGATAAGAA
TCACAACTCGGCATTTCTAGGCACTAACTCCTTTGAGCAGAGCGAAAGTC
TCTGCCGGGGTGTGCTCGACCCAGAAGCTGAATTTGACATCGAGGAACTT
GGCCCTGCCACACGCTCTATTGGGGTCTCCAGTGGCCCGACCCCGGTACA
AACCCTACCAAGCCATTACAATCGTCACCAGGGCGCCTATTTGTACAGGG
ACGGGGTTGGTACTGGCGGGAACGACGGGGACGGAGACAAGCATGTTGAG
TGTACGCCACCTTTGACCATCCCTTTCATGCCTCAGAAGCAGCATCAACG
GGCCGATTACTTGCTATCCTCAAAACTGCGGTCTAACGATGCGGTCGATA
TGATTCCTGCAAAGCTTGTTGCGCCAAATCTGCCTTTTGAAACGTCACTG
TTCCCTCTCGAAAGGTGTCACTACTACACAAATAAGCCTACTCCTGAATT
GTTTTCTGATATTCAGGTGGCACTCAAGGAGAAAGCCGTTGTATTCAAAT
TTGTACCTGGTAAATTTAAATTCAGTTGCGAGTATCGGACCGGTGTAAAT
AATGTACGCTTTGTTTGCCGGGCATACTTTGTTCCTGAGGATGGTCGCAC
GGTGGTAGAGTTTCAGAGACGTTCGGGCTGCTGCATTGTGTGCGCCAAAG
TAGTGGATGCGGTGCGCTCTACTCTGCTCGCTCGTGAATGCAATTCTGAG
GCATTACCGATTTCCATAAGGCCTTTCAAGCCCAAGCCCTTGGCTGCGTC
TGCCTGTCTGGTCCAGGAGGAAGGTGAGTCAAGCGCAAAGGTTGAGCGCG
CTCGCCAGGAGGCCCAGCAGTGCAAGCTCATGCGAGACCTGCAGGACTGC
CTTGCTCAAGGCAGAGATGACGTTTTGACAGATTTTGCGAAGGTTTTAAT
TCCACTTTCTCAGCTTGCACCGGAGCATTTACTGGGTCAGCCAAGCCATG
CCGAGCTGTTGGCAGCTCTGGGACGGCATGAGATTCAAAGCACCCGCCTG
AGCGCGCTAGTTTGTTTAGCCAACCTCGCAGCAGCTTGCTTCCCGCAATC
TGGAGAAGGATTATCGAGTGTTCCCTTCCTGCGGCGAGGTGTGAGCACAG
ACACAGAGGATGATAACCCGGATGTGGAGACCGGAGAGGAGCCGGCGCCA
AGCGCGGGCGATGTATGTGCTTGGTTCGAGGACGTGCTCGAAACAATAAT
TAACGCACTACAGTCTAAATTTGGCCCCCGTTCGGATGCGCATGTTCGTC
GAGAGGCCGCTCGTGCCCTGTGGCACCTGTCTAAAGAGTCCTTTGCTCGC
ACCGCAGCCGCACGACAGGTTTTGGAATCATGTGTTTCTGGGGATGCAGA
GGAAGACCACGTCCTTCAAGAGTATGTCCGTGGGGCCTTGGAGCACATGC
AGTTTTGCTGAATACAAGAAAAGGTGATAGCAACGCGGGATGGTCAACAA
ATATCTTAGATCCCCTGTACAAACCATTGGACGAAGAGTGGAGATCCCTG
CATCGATTTTCTGTGGTATTAGCAGTACTTCATGTTTTATGTACACTTTC
TTCTAGATTGACGATGTTATTCTGATAAAGATTTGCGAAATTAAGGGAGC
GAACGGGAAGTAAACCATCTTGCGACTGATGGGTAAATTTTCGAATAGAA
ATATCCAACTAAGGATGAAACA
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protein sequence of rna3526

>rna3526-protein ID=rna3526-protein|Name=rna3526|organism=Nannochloropsis gaditana|type=polypeptide|length=95bp
MVISAAEQNSMKLVKTRKRHVDFRRELVLREEHVFYHELVKMVPKLASLR
RMLDDSVLSKLVGKSRSLEDSLPDYYHLNEATNIALHGEFHEEED
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mRNA from alignment at CM002461.1:607583..608364+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3526 ID=rna3526|Name=rna3526|organism=Nannochloropsis gaditana|type=mRNA|length=782bp|location=Sequence derived from alignment at CM002461.1:607583..608364+ (Nannochloropsis gaditana)
ttttgtcAAAGTAACGCGGGACATGGAGCCTTGCCAGAACAACCGGTGTG
AGGCATGGTGCTGCCGAGCCTTGCCAGGCCCCGAAGTGGCCATAATCAAC
CACTGCGAGACCGACATTGGCCTGTACATATGAGGTGCACGCCGCATGGT
CATTTCGGCGGCAGAGCAGAACAGCATGAAGCTCGTCAAGACACGCAAGC
GCCACGTTGATTTTCGACGCGAGCTCGtcctgcgggaggagcaCGTCTTC
TATCACGAGCTTGTGAAGATGGTACCAAAGCTGGCATCGCTGCGACGGAT
GCTAGACGACAGCGTGCTGTCCAAGCTCGTGGGCAAGAGCAGAAGCTTGG
aggactccctccctgaTTATTATCACCTCAATGAAGCCACTAACATCGCA
TTGCATGGCGAGTttcacgaggaggaagactaAGAGAGGATTGAGGATTA
CCTGCGTAAAATTGCACGCCACGCTGGGTACGGGCCGAATCAAAGGTTCT
ACATTCGGGTCATGAGGCATTTGGGTGCGCTCGAGGCCCTGTGCGGACGT
CGCGTTCTACCAAATGACGCAGGAGGGTGAGCGGTTACTGGCGGAAGTGG
CGGTCTACCTCAAGGTCTGTGTGGAGCGTATGCAGGCGGGGTGAATTCCG
CCGCCACACACAGACACTTTGTCTATCGAGTGGTTTTGATGCAGACTGCC
ACTTCTTAGTACCTGCTTGCCCGCGAGGCGCATGATATGTATGAAAATAT
GGAAgccttttttaaaaagaaACAGCTTAGGA
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Coding sequence (CDS) from alignment at CM002461.1:607583..608364+

>rna3526 ID=rna3526|Name=rna3526|organism=Nannochloropsis gaditana|type=CDS|length=288bp|location=Sequence derived from alignment at CM002461.1:607583..608364+ (Nannochloropsis gaditana)
ATGGTCATTTCGGCGGCAGAGCAGAACAGCATGAAGCTCGTCAAGACACG
CAAGCGCCACGTTGATTTTCGACGCGAGCTCGtcctgcgggaggagcaCG
TCTTCTATCACGAGCTTGTGAAGATGGTACCAAAGCTGGCATCGCTGCGA
CGGATGCTAGACGACAGCGTGCTGTCCAAGCTCGTGGGCAAGAGCAGAAG
CTTGGaggactccctccctgaTTATTATCACCTCAATGAAGCCACTAACA
TCGCATTGCATGGCGAGTttcacgaggaggaagactaA
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Synonyms
Publications