rna3524, rna3524 (mRNA) Nannochloropsis gaditana

Overview
Namerna3524
Unique Namerna3524
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length309
Alignment locationCM002461.1:604515..604954 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g82.6140.mrna
Orig protein idgnl|cribi|Naga_100010g82.6140
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:604515..604954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g82gene3394Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3524rna3524-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27170.1cds3515Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3524 ID=rna3524|Name=rna3524|organism=Nannochloropsis gaditana|type=mRNA|length=309bp
ATGAGACCGATTTTCTCAACCTTCCGTGTAAAGGAAGAAACATCTAAGAT
CCTGAACAAAGCTTATTGTCATGAGCTAACTTGTATCCATTGTATTCGGA
GGCTTCTACGGACCTTGCCTGATATCATACCGCGATGTCGATTCTTTTCT
ATATCCGGCGCGGCTATCCCCGATGGTTGCCGAGGCTTTTACGATCGTCT
GCTAAAGATACATGAGCGCGTCGAAGCTGCACAAAATGAAGCTCTTCCAT
CAACAAGATCAACATCAAATTATCGCATGCTTACGACTACTCTTGTCAAA
ACTAGCTAG
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protein sequence of rna3524

>rna3524-protein ID=rna3524-protein|Name=rna3524|organism=Nannochloropsis gaditana|type=polypeptide|length=131bp
MCSYRLVQREELVTCATINRGHDLDIGSIARSLERPRASDSHTPRGRALL
ETLKSVMEYFDHIGSPPKPECYVYPPPIQCYGKDTCVPFYSKFCHLILSK
LLMKRLTNRFLFFAQGHFLKQKCFDVSWPPR
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mRNA from alignment at CM002461.1:604515..604954+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3524 ID=rna3524|Name=rna3524|organism=Nannochloropsis gaditana|type=mRNA|length=440bp|location=Sequence derived from alignment at CM002461.1:604515..604954+ (Nannochloropsis gaditana)
ATGTGCTCTTACAGACTTGTACAGCGAGAAGAACTGGTTACCTGTGCAAC
CATTAACCGAGGTCATGACCTGGACATAGGCTCCATCGCCAGGAGTTTGG
AGAGGCCCCGCGCTGTCAGCAGCCTATCAACTCTAGATGTATTTATTGTT
AGACCTAGAGCGATTCACACACGCCACGTGGACGAGCATTGCTGGAAACT
TTGAAGTCTGTAATGGAGTATTTTGACCATATAGGATCACCTCCGAAGCC
CGAGTGCTATGTGTACCCCCCGCCCATACAATGCTACGGGAAGGATACTT
GCGTACCCTTCTACAGCAAATTTTGTCACCTTATCTTATCGAAGCTCCTA
ATGAAACGCTTGACCAACCGGTTTTTGTTCTTCGCACAAGGTCACTTCTT
AAAACAAAAGTGCTTTGATGTGTCCTGGCCGCCGAGATAG
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Coding sequence (CDS) from alignment at CM002461.1:604515..604954+

>rna3524 ID=rna3524|Name=rna3524|organism=Nannochloropsis gaditana|type=CDS|length=792bp|location=Sequence derived from alignment at CM002461.1:604515..604954+ (Nannochloropsis gaditana)
ATGTGCTCTTACAGACTTGTACAGCGAGAAGAACTGGTTACCTGTGCAAC
CATTAACCGAGGTCATGACCTGGACATAGGCTCCATCGCCAGGAGTTTGG
AGAGGCCCCGCGCTAGCGATTCACACACGCCACGTGGACGAGCATTGCTG
GAAACTTTGAAGTCTGTAATGGAGTATTTTGACCATATAGGATCACCTCC
GAAGCCCGAGTGCTATGTGTACCCCCCGCCCATACAATGCTACGGGAAGG
ATACTTGCGTACCCTTCTACAGCAAATTTTGTCACCTTATCTTATCGAAG
CTCCTAATGAAACGCTTGACCAACCGGTTTTTGTTCTTCGCACAAGGTCA
CTTCTTAAAACAAAAGTGCTTTGATGTGTCCTGGCCGCCGAGATAGATGT
GCTCTTACAGACTTGTACAGCGAGAAGAACTGGTTACCTGTGCAACCATT
AACCGAGGTCATGACCTGGACATAGGCTCCATCGCCAGGAGTTTGGAGAG
GCCCCGCGCTAGCGATTCACACACGCCACGTGGACGAGCATTGCTGGAAA
CTTTGAAGTCTGTAATGGAGTATTTTGACCATATAGGATCACCTCCGAAG
CCCGAGTGCTATGTGTACCCCCCGCCCATACAATGCTACGGGAAGGATAC
TTGCGTACCCTTCTACAGCAAATTTTGTCACCTTATCTTATCGAAGCTCC
TAATGAAACGCTTGACCAACCGGTTTTTGTTCTTCGCACAAGGTCACTTC
TTAAAACAAAAGTGCTTTGATGTGTCCTGGCCGCCGAGATAG
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Synonyms
Publications