rna3522, rna3522 (mRNA) Nannochloropsis gaditana

Overview
Namerna3522
Unique Namerna3522
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1148
Alignment locationCM002461.1:602619..603572 -

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Properties
Property NameValue
ProductSNARE-complex protein Syntaxin-18 like protein
Orig transcript idgnl|cribi|Naga_100010g80.6167.mrna
Orig protein idgnl|cribi|Naga_100010g80.6167
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:602619..603572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g80gene3392Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3522rna3522-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27197.1cds3513Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3522 ID=rna3522|Name=rna3522|organism=Nannochloropsis gaditana|type=mRNA|length=1148bp
GCTGCTTTCTTTTCATCCGTTTCCGGCTCAGCAGTCAATACATCGGAGTG
TCGTCCTCCGAGAATTGGATGATTTTCAATCATTGTAACAAGCTTTTTGA
ATCACAAGGCGTAGCCCCGGGCAAGGGAGCCAAGGTGATGAGATGGCAGC
TGTGGGGTATATTCGAAAGAGACTCCGAGTTATACAAAAAAATGCTTTTC
TTGACGTTTTGACGAAGGGAATTCACACATTTTGCACTTTGGAGTGTGGA
CTGAACGTGCCAAACGAAAGCAACCTCGTACAATTTTGGTGCGCGCGGTC
GTGGAACAAGGGCGCATTCGAGAACGTGTGGAAGCGAAAGTCAGGCCGCG
CAGGCGCCGTCGCCGTACACTGCCGGCGAGCCGGGCGGAAGACAGTTCTT
TATATCAGGGCATTACTTGATCGATCACAAGGAGGGCAATGCATAGCATG
AGCACGAAACTAAACATGGTCTGGCTGGCTTTACTGTTTCTCTCGAGCGT
CGCCAAGAGCTCTTTGTTGGCGTGACCTAAATTCTCGTGCGTGCCTCGAG
CCGCTTCATGAACCTCTTCTACTTGGCCCTGTTGCTCTAAAAGCTCTCCG
GTAAAGAGTCCCAGAAGTTGCGACAGCTCCTCCATTTTCCCTTCCATGAT
CCTGAGAAGTTACGGAATATTGTATGGACAGGGTGGGAGGTTATTGAGAT
GCGAGAGTGCACGGAATGCATGGAATATACGCAACATTTCAACAAATTTC
TCACTACTCATCCACTTAATCATAGTATATTAAATTACTTATGAATCTCC
TTCGAGCTGGATTGTCAATTTGATGATGCGCGACGGTTCTTCAATGACTT
TGATGCACCAAAACTTACTTGACGTCGTGTAACTCGTTGTTAAGCCGCAC
TTTGAGTACTCGGTTCTCGTGCTCAAGCATAGCTTGCCTCTGTACTTGCT
CCCCGACGTCTCGCCCTGCTTCACGCGCTGCCAACCGGCGTCTAAAAGCC
TCATCTTCATCGCTCTCAAGCTTGTGAATGTGAAGGATGAAAATACAGTC
ATGTAAGCTTCCAGAGCTCAACACAGGGTACTTATCTCCCAGAAATGGAG
AGACTGAAAACCTGATGAACAAAAGCAATTTCAAAATCGCACGAATGC
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protein sequence of rna3522

>rna3522-protein ID=rna3522-protein|Name=rna3522|organism=Nannochloropsis gaditana|type=polypeptide|length=244bp
MDVTDAWLAAVASARWTTKAASPGFPSSTCVKSRTAFATASTSTFPNKSA
DATHGIITDPFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANM
TDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVGGEG
SRLAHHGKVVAYLAERLQDLGNTLQNLQARRRHLNGLVPSSSGADAGQAC
RPGSTTRTLTTPSWNSFAKAGGSHKAKGRPIMAPNKVGSAFVRF
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mRNA from alignment at CM002461.1:602619..603572-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3522 ID=rna3522|Name=rna3522|organism=Nannochloropsis gaditana|type=mRNA|length=954bp|location=Sequence derived from alignment at CM002461.1:602619..603572- (Nannochloropsis gaditana)
ATGGACGTGACAGACGCATGGTTGGCGGCAGTGGCGAGTGCTAGATGGAC
AACAAAGGCGGCCTCTCCTGGCTTCCCCTCCTCGACCTGTGTAAAGTCCC
GCACAGCTTTTGCAACTGCCTCGACTTCGACTTTTCCAAATAAGTCAGCC
GACGCCACTCATGGGATCATAACAGACCCTTTTACGCAGCAGGCTCGTGA
GGTTCTGGACAGCATTCGGACCAAGGAAGAAATATTAAAAAAAAATCGGG
GCCGCTACGTAGATCCGTATCGATATGTGCCGTCGAGGGCTGCAAACATG
ACGGACCTAGAACGTGACCAAATAGATCAGGTCATGGCCTCATTCATCAT
CAAATGTGGCTCACAAATTGAAATACTTCGTTGCGCGCTTGCTGGTAAGG
AGCTATTTAAAAAGACATCTGGTAATCGAGAGGGGCTTTGATTCGAGCTC
ACATGTCTTATCTTCTACAGAAGCGAGTTCCCTCGAAGCTGGAGGAGGGA
ACGCCGACCTTGTGGGAGGTGAAGGATCTCGACTGGCCCATCACGGGAAG
GTGGTGGCCTACCTTGCAGAGGTGGGTTCTTGCTTTGACATGTACAGCGG
TGCTGCACCTGGTTACTGATCTCAAAATCACTTCCAGAGGTTGCAAGATC
TAGGTAACACGTTACAAAACCTTCAGGCCCGACGACGGCACTTGAATGGG
CTCGTGCCGTCAAGTTCCGGTGCTGATGCAGGGCAAGCTTGTCGTCCAGG
CTCAACGACAAGGTTAGAAACGTGCGAGGTAGCTCTTCTGAGATTTCAAC
TTTATCTAAGATGCTTCTGTACCTGCTCGCAATTGACAGGACGCTTACTA
CACCATCTTGGAATTCCTTCGCCAAGGCAGGCGGCTCACACAAAGCAAAA
GGGCGGCCGATCATGGCTCCTAACAAGGTTGGTTCCGCATTCGTGCGATT
TTGA
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Coding sequence (CDS) from alignment at CM002461.1:602619..603572-

>rna3522 ID=rna3522|Name=rna3522|organism=Nannochloropsis gaditana|type=CDS|length=2940bp|location=Sequence derived from alignment at CM002461.1:602619..603572- (Nannochloropsis gaditana)
GACGCTTACTACACCATCTTGGAATTCCTTCGCCAAGGCAGGCGGCTCAC
ACAAAGCAAAAGGGCGGCCGATCATGGCTCCTAACAAGGTTGGTTCCGCA
TTCGTGCGATTTTGAAGGTTGCAAGATCTAGGTAACACGTTACAAAACCT
TCAGGCCCGACGACGGCACTTGAATGGGCTCGTGCCGTCAAGTTCCGGTG
CTGATGCAGGGCAAGCTTGTCGTCCAGGCTCAACGACAAGAAGCGAGTTC
CCTCGAAGCTGGAGGAGGGAACGCCGACCTTGTGGGAGGTGAAGGATCTC
GACTGGCCCATCACGGGAAGGTGGTGGCCTACCTTGCAGAGATGGACGTG
ACAGACGCATGGTTGGCGGCAGTGGCGAGTGCTAGATGGACAACAAAGGC
GGCCTCTCCTGGCTTCCCCTCCTCGACCTGTGTAAAGTCCCGCACAGCTT
TTGCAACTGCCTCGACTTCGACTTTTCCAAATAAGTCAGCCGACGCCACT
CATGGGATCATAACAGACCCTTTTACGCAGCAGGCTCGTGAGGTTCTGGA
CAGCATTCGGACCAAGGAAGAAATATTAAAAAAAAATCGGGGCCGCTACG
TAGATCCGTATCGATATGTGCCGTCGAGGGCTGCAAACATGACGGACCTA
GAACGTGACCAAATAGATCAGGTCATGGCCTCATTCATCATCAAATGTGG
CTCACAAATTGAAATACTTCGTTGCGCGCTTGCTGGACGCTTACTACACC
ATCTTGGAATTCCTTCGCCAAGGCAGGCGGCTCACACAAAGCAAAAGGGC
GGCCGATCATGGCTCCTAACAAGGTTGGTTCCGCATTCGTGCGATTTTGA
AGGTTGCAAGATCTAGGTAACACGTTACAAAACCTTCAGGCCCGACGACG
GCACTTGAATGGGCTCGTGCCGTCAAGTTCCGGTGCTGATGCAGGGCAAG
CTTGTCGTCCAGGCTCAACGACAAGAAGCGAGTTCCCTCGAAGCTGGAGG
AGGGAACGCCGACCTTGTGGGAGGTGAAGGATCTCGACTGGCCCATCACG
GGAAGGTGGTGGCCTACCTTGCAGAGATGGACGTGACAGACGCATGGTTG
GCGGCAGTGGCGAGTGCTAGATGGACAACAAAGGCGGCCTCTCCTGGCTT
CCCCTCCTCGACCTGTGTAAAGTCCCGCACAGCTTTTGCAACTGCCTCGA
CTTCGACTTTTCCAAATAAGTCAGCCGACGCCACTCATGGGATCATAACA
GACCCTTTTACGCAGCAGGCTCGTGAGGTTCTGGACAGCATTCGGACCAA
GGAAGAAATATTAAAAAAAAATCGGGGCCGCTACGTAGATCCGTATCGAT
ATGTGCCGTCGAGGGCTGCAAACATGACGGACCTAGAACGTGACCAAATA
GATCAGGTCATGGCCTCATTCATCATCAAATGTGGCTCACAAATTGAAAT
ACTTCGTTGCGCGCTTGCTGGACGCTTACTACACCATCTTGGAATTCCTT
CGCCAAGGCAGGCGGCTCACACAAAGCAAAAGGGCGGCCGATCATGGCTC
CTAACAAGGTTGGTTCCGCATTCGTGCGATTTTGAAGGTTGCAAGATCTA
GGTAACACGTTACAAAACCTTCAGGCCCGACGACGGCACTTGAATGGGCT
CGTGCCGTCAAGTTCCGGTGCTGATGCAGGGCAAGCTTGTCGTCCAGGCT
CAACGACAAGAAGCGAGTTCCCTCGAAGCTGGAGGAGGGAACGCCGACCT
TGTGGGAGGTGAAGGATCTCGACTGGCCCATCACGGGAAGGTGGTGGCCT
ACCTTGCAGAGATGGACGTGACAGACGCATGGTTGGCGGCAGTGGCGAGT
GCTAGATGGACAACAAAGGCGGCCTCTCCTGGCTTCCCCTCCTCGACCTG
TGTAAAGTCCCGCACAGCTTTTGCAACTGCCTCGACTTCGACTTTTCCAA
ATAAGTCAGCCGACGCCACTCATGGGATCATAACAGACCCTTTTACGCAG
CAGGCTCGTGAGGTTCTGGACAGCATTCGGACCAAGGAAGAAATATTAAA
AAAAAATCGGGGCCGCTACGTAGATCCGTATCGATATGTGCCGTCGAGGG
CTGCAAACATGACGGACCTAGAACGTGACCAAATAGATCAGGTCATGGCC
TCATTCATCATCAAATGTGGCTCACAAATTGAAATACTTCGTTGCGCGCT
TGCTGGACGCTTACTACACCATCTTGGAATTCCTTCGCCAAGGCAGGCGG
CTCACACAAAGCAAAAGGGCGGCCGATCATGGCTCCTAACAAGGTTGGTT
CCGCATTCGTGCGATTTTGAAGGTTGCAAGATCTAGGTAACACGTTACAA
AACCTTCAGGCCCGACGACGGCACTTGAATGGGCTCGTGCCGTCAAGTTC
CGGTGCTGATGCAGGGCAAGCTTGTCGTCCAGGCTCAACGACAAGAAGCG
AGTTCCCTCGAAGCTGGAGGAGGGAACGCCGACCTTGTGGGAGGTGAAGG
ATCTCGACTGGCCCATCACGGGAAGGTGGTGGCCTACCTTGCAGAGATGG
ACGTGACAGACGCATGGTTGGCGGCAGTGGCGAGTGCTAGATGGACAACA
AAGGCGGCCTCTCCTGGCTTCCCCTCCTCGACCTGTGTAAAGTCCCGCAC
AGCTTTTGCAACTGCCTCGACTTCGACTTTTCCAAATAAGTCAGCCGACG
CCACTCATGGGATCATAACAGACCCTTTTACGCAGCAGGCTCGTGAGGTT
CTGGACAGCATTCGGACCAAGGAAGAAATATTAAAAAAAAATCGGGGCCG
CTACGTAGATCCGTATCGATATGTGCCGTCGAGGGCTGCAAACATGACGG
ACCTAGAACGTGACCAAATAGATCAGGTCATGGCCTCATTCATCATCAAA
TGTGGCTCACAAATTGAAATACTTCGTTGCGCGCTTGCTG
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Synonyms
Publications