EWM27197.1, cds3513 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|585109377|gb|EWM27197.1| (SNARE-complex protein Syntaxin-18 like protein [Nannochloropsis gaditana]) HSP 1 Score: 505.368 bits (1300), Expect = 0.000e+0 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query: 1 MDVTDAWLAAVASARWTTKAASPGFPSSTCVKSRTAFATASTSTFPNKSADATHGIITDPFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVGGEGSRLAHHGKVVAYLAERLQDLGNTLQNLQARRRHLNGLVPSSSGADAGQACRPGSTTRTLTTPSWNSFAKAGGSHKAKGRPIMAPNKVGSAFVRF 244
MDVTDAWLAAVASARWTTKAASPGFPSSTCVKSRTAFATASTSTFPNKSADATHGIITDPFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVGGEGSRLAHHGKVVAYLAERLQDLGNTLQNLQARRRHLNGLVPSSSGADAGQACRPGSTTRTLTTPSWNSFAKAGGSHKAKGRPIMAPNKVGSAFVRF
Sbjct: 1 MDVTDAWLAAVASARWTTKAASPGFPSSTCVKSRTAFATASTSTFPNKSADATHGIITDPFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVGGEGSRLAHHGKVVAYLAERLQDLGNTLQNLQARRRHLNGLVPSSSGADAGQACRPGSTTRTLTTPSWNSFAKAGGSHKAKGRPIMAPNKVGSAFVRF 244
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|702424520|ref|XP_010067483.1| (PREDICTED: syntaxin-81 [Eucalyptus grandis] >gi|702424524|ref|XP_010067484.1| PREDICTED: syntaxin-81 [Eucalyptus grandis] >gi|702424530|ref|XP_010067485.1| PREDICTED: syntaxin-81 [Eucalyptus grandis] >gi|1091488287|ref|XP_018733051.1| PREDICTED: syntaxin-81 [Eucalyptus grandis] >gi|1091488289|ref|XP_018733052.1| PREDICTED: syntaxin-81 [Eucalyptus grandis] >gi|1091488293|ref|XP_018733053.1| PREDICTED: syntaxin-81 [Eucalyptus grandis] >gi|629099862|gb|KCW65627.1| hypothetical protein EUGRSUZ_G03020 [Eucalyptus grandis] >gi|629099863|gb|KCW65628.1| hypothetical protein EUGRSUZ_G03020 [Eucalyptus grandis]) HSP 1 Score: 70.0922 bits (170), Expect = 1.827e-10 Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 0
Query: 61 FTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEAS-------SLEAGGGNADLVGGEGSRLAHHGKVVAYLAERLQDLGNTLQNLQARR 181
FT+ A + L+SI+T E+ ++K+R YVDP R T+ ERD I+Q + +FI C QI+IL+ ++ E +L A G NAD + AH VV L+E+L + L+A R
Sbjct: 47 FTKAALKTLESIQTLEQFMRKHRKDYVDPLR--------TTEQERDSIEQEVTAFIKTCKEQIDILQVSITEEEKKLKGWLALSAEGSNADTI-------AHKQGVVLILSEKLHSVTAQFDQLRAIR 159
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|1002314601|ref|XP_015620666.1| (PREDICTED: syntaxin-81 isoform X1 [Oryza sativa Japonica Group] >gi|218186455|gb|EEC68882.1| hypothetical protein OsI_37514 [Oryza sativa Indica Group] >gi|222616657|gb|EEE52789.1| hypothetical protein OsJ_35261 [Oryza sativa Japonica Group] >gi|937941027|dbj|BAT15939.1| Os12g0154400 [Oryza sativa Japonica Group]) HSP 1 Score: 63.5438 bits (153), Expect = 3.056e-8 Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 0
Query: 60 PFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVG--GEGSRL---AHHGKVVAYLAERLQDLGNTLQNLQARR 181
PFT+ A + L+SIR E+ + K+R YVD +R T+ ERD I+ ++ F+ C QI+IL+ + E E GG +G E SRL AH VV L+ERL + L+ R
Sbjct: 46 PFTKAAIKTLESIRELEKFIVKHRKDYVDMHR--------TTEQERDNIEHEVSVFVKACKEQIDILKNRIHE----EKGGSTKTWLGTSDESSRLDLIAHQHGVVLILSERLHSVTAQFDRLRTMR 160
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|1191653092|gb|OTG05064.1| (putative syntaxin of plants 81 [Helianthus annuus]) HSP 1 Score: 63.5438 bits (153), Expect = 3.250e-8 Identity = 40/128 (31.25%), Postives = 65/128 (50.78%), Query Frame = 0
Query: 61 FTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEAS-------SLEAGGGNADLVGGEGSRLAHHGKVVAYLAERLQDLGNTLQNLQARR 181
FT+ A + L+SI T E+ LKK+R Y+DP+R T+ ERD I+ ++ F+ C QI++L+ ++ + + A NAD + AH VV L+E+L + + L+A R
Sbjct: 47 FTKAALKTLESIGTLEQFLKKHRKDYIDPHR--------TTEEERDSIEHEVSVFVKACKEQIDVLKTSITDEEVNSKGWLGIRADNANADTI-------AHKHGVVLILSEKLHSVTSQFDQLRAVR 159
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|1002314603|ref|XP_015620667.1| (PREDICTED: syntaxin-81 isoform X2 [Oryza sativa Japonica Group]) HSP 1 Score: 63.1586 bits (152), Expect = 3.694e-8 Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 0
Query: 60 PFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVG--GEGSRL---AHHGKVVAYLAERLQDLGNTLQNLQARR 181
PFT+ A + L+SIR E+ + K+R YVD +R T+ ERD I+ ++ F+ C QI+IL+ + E E GG +G E SRL AH VV L+ERL + L+ R
Sbjct: 46 PFTKAAIKTLESIRELEKFIVKHRKDYVDMHR--------TTEQERDNIEHEVSVFVKACKEQIDILKNRIHE----EKGGSTKTWLGTSDESSRLDLIAHQHGVVLILSERLHSVTAQFDRLRTMR 160
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|77553055|gb|ABA95851.1| (Syntaxin 81, putative [Oryza sativa Japonica Group]) HSP 1 Score: 63.1586 bits (152), Expect = 3.715e-8 Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 0
Query: 60 PFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVG--GEGSRL---AHHGKVVAYLAERLQDLGNTLQNLQARR 181
PFT+ A + L+SIR E+ + K+R YVD +R T+ ERD I+ ++ F+ C QI+IL+ + E E GG +G E SRL AH VV L+ERL + L+ R
Sbjct: 46 PFTKAAIKTLESIRELEKFIVKHRKDYVDMHR--------TTEQERDNIEHEVSVFVKACKEQIDILKNRIHE----EKGGSTKTWLGTSDESSRLDLIAHQHGVVLILSERLHSVTAQFDRLRTMR 160
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|1002263005|ref|XP_015635852.1| (PREDICTED: syntaxin-81 [Oryza sativa Japonica Group] >gi|38346626|emb|CAD41209.2| OSJNBa0074L08.20 [Oryza sativa Japonica Group] >gi|38346757|emb|CAE03862.2| OSJNBa0081C01.8 [Oryza sativa Japonica Group] >gi|113564960|dbj|BAF15303.1| Os04g0530400 [Oryza sativa Japonica Group] >gi|215695318|dbj|BAG90509.1| unnamed protein product [Oryza sativa Japonica Group] >gi|218195262|gb|EEC77689.1| hypothetical protein OsI_16746 [Oryza sativa Indica Group] >gi|222629256|gb|EEE61388.1| hypothetical protein OsJ_15559 [Oryza sativa Japonica Group] >gi|937915288|dbj|BAS90207.1| Os04g0530400 [Oryza sativa Japonica Group]) HSP 1 Score: 63.1586 bits (152), Expect = 4.267e-8 Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 0
Query: 60 PFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVG--GEGSRL---AHHGKVVAYLAERLQDLGNTLQNLQARR 181
PFT+ A + L+SIR E+ + K+R YVD +R T+ ERD I+ ++ F+ C QI+IL+ + E E GG +G E SRL AH VV L+ERL + L+ R
Sbjct: 46 PFTKAAIKTLESIRELEKFIVKHRKDYVDLHR--------TTEQERDNIEHEVSVFVKACKEQIDILKNRIHE----EKGGSTKTWLGTSDESSRLDLIAHQHGVVLILSERLHSVTVQFDRLRTMR 160
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|1070985309|gb|OEL35442.1| (Syntaxin-81 [Dichanthelium oligosanthes]) HSP 1 Score: 62.3882 bits (150), Expect = 1.122e-7 Identity = 54/175 (30.86%), Postives = 76/175 (43.43%), Query Frame = 0
Query: 13 SARWTTKAASPGFPSSTCVKSRTAFATASTSTFPNKSADATHGIITDPFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVGG---EGSRL---AHHGKVVAYLAERLQDLGNTLQNLQARR 181
S+ + K P F + CV + A +S K + PFT A + L+SIR E + K+R YVD +R T+ ERD I+ + F+ C QI+IL+ + + E GNA G E SRL AH VV L ERL + L++ R
Sbjct: 38 SSAYGRKLNDPQFIALRCVAMQAQLAALMSSFIIRKLTPKS------PFTNAAIKTLESIRELERFIVKHRRDYVDLHR--------TTEQERDNIEHEVGVFVKACKEQIDILKNRIHD----EEKNGNAKTWLGTRDESSRLDLIAHQHGVVLILCERLHSVTAQFDRLRSMR 194
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|449441332|ref|XP_004138436.1| (PREDICTED: syntaxin-81 [Cucumis sativus] >gi|778709443|ref|XP_011656400.1| PREDICTED: syntaxin-81 [Cucumis sativus] >gi|700190562|gb|KGN45766.1| hypothetical protein Csa_6G009450 [Cucumis sativus]) HSP 1 Score: 61.6178 bits (148), Expect = 1.334e-7 Identity = 47/159 (29.56%), Postives = 74/159 (46.54%), Query Frame = 0
Query: 60 PFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVGGEGSRLAHHGKVVAYLAERLQDLGNTLQNLQARRRH--LNGLVPSSSGADAGQACRPGSTTRTLTTPSWNS 216
PF + A + L+SI EE + K++ YVD YR TD ERD I+ +A+FI C Q++IL+ ++ E + G +AH VV L+E+L + + L+A R ++ VP Q +P R+ TP +N+
Sbjct: 46 PFIKAALKTLESIGALEEFMLKHQKDYVDMYR--------TTDQERDNIEHEVAAFIKACQEQLDILKNSINEDDAHSKGWLGPRTDDSNADTIAHKHGVVLILSEKLHSVTSQFDKLRAIRFQDIISKAVPRRK---LNQVNKP----RSANTPEYNN 189
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|514802862|ref|XP_004976323.1| (PREDICTED: syntaxin-81 [Setaria italica] >gi|944233852|gb|KQK98214.1| hypothetical protein SETIT_010629mg [Setaria italica]) HSP 1 Score: 61.2326 bits (147), Expect = 2.179e-7 Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 0
Query: 60 PFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVG--GEGSRL---AHHGKVVAYLAERLQDLGNTLQNLQARR 181
PFT A + L+SIR E + K+R YVD +R T+ ERD I+ + F+ C QI+IL+ + E E GG +G E SRL AH VV L+ERL + L++ R
Sbjct: 46 PFTNAAIKTLESIRELERFIVKHRRDYVDLHR--------TTEQERDNIEHEVGVFVKACKEQIDILKNRIHEE---EKNGGAKTWLGTRDESSRLDLIAHQHGVVLILSERLHSVTAQFDRLRSMR 161 The following BLAST results are available for this feature:
BLAST of EWM27197.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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