EWM27197.1, cds3513 (CDS) Nannochloropsis gaditana

Overview
NameEWM27197.1
Unique Namecds3513
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:603179..603572 -
Alignment locationCM002461.1:603002..603102 -
Alignment locationCM002461.1:602811..602935 -
Alignment locationCM002461.1:602619..602733 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27197.1
ProductSNARE-complex protein Syntaxin-18 like protein
Orig transcript idgnl|cribi|Naga_100010g80.6167.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:603179..603572 -
CM002461.1supercontigCM002461.1:603002..603102 -
CM002461.1supercontigCM002461.1:602811..602935 -
CM002461.1supercontigCM002461.1:602619..602733 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019529Syntaxin-18_N
Homology
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|585109377|gb|EWM27197.1| (SNARE-complex protein Syntaxin-18 like protein [Nannochloropsis gaditana])

HSP 1 Score: 505.368 bits (1300), Expect = 0.000e+0
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:    1 MDVTDAWLAAVASARWTTKAASPGFPSSTCVKSRTAFATASTSTFPNKSADATHGIITDPFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVGGEGSRLAHHGKVVAYLAERLQDLGNTLQNLQARRRHLNGLVPSSSGADAGQACRPGSTTRTLTTPSWNSFAKAGGSHKAKGRPIMAPNKVGSAFVRF 244
            MDVTDAWLAAVASARWTTKAASPGFPSSTCVKSRTAFATASTSTFPNKSADATHGIITDPFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVGGEGSRLAHHGKVVAYLAERLQDLGNTLQNLQARRRHLNGLVPSSSGADAGQACRPGSTTRTLTTPSWNSFAKAGGSHKAKGRPIMAPNKVGSAFVRF
Sbjct:    1 MDVTDAWLAAVASARWTTKAASPGFPSSTCVKSRTAFATASTSTFPNKSADATHGIITDPFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVGGEGSRLAHHGKVVAYLAERLQDLGNTLQNLQARRRHLNGLVPSSSGADAGQACRPGSTTRTLTTPSWNSFAKAGGSHKAKGRPIMAPNKVGSAFVRF 244          
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|702424520|ref|XP_010067483.1| (PREDICTED: syntaxin-81 [Eucalyptus grandis] >gi|702424524|ref|XP_010067484.1| PREDICTED: syntaxin-81 [Eucalyptus grandis] >gi|702424530|ref|XP_010067485.1| PREDICTED: syntaxin-81 [Eucalyptus grandis] >gi|1091488287|ref|XP_018733051.1| PREDICTED: syntaxin-81 [Eucalyptus grandis] >gi|1091488289|ref|XP_018733052.1| PREDICTED: syntaxin-81 [Eucalyptus grandis] >gi|1091488293|ref|XP_018733053.1| PREDICTED: syntaxin-81 [Eucalyptus grandis] >gi|629099862|gb|KCW65627.1| hypothetical protein EUGRSUZ_G03020 [Eucalyptus grandis] >gi|629099863|gb|KCW65628.1| hypothetical protein EUGRSUZ_G03020 [Eucalyptus grandis])

HSP 1 Score: 70.0922 bits (170), Expect = 1.827e-10
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 0
Query:   61 FTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEAS-------SLEAGGGNADLVGGEGSRLAHHGKVVAYLAERLQDLGNTLQNLQARR 181
            FT+ A + L+SI+T E+ ++K+R  YVDP R         T+ ERD I+Q + +FI  C  QI+IL+ ++ E         +L A G NAD +       AH   VV  L+E+L  +      L+A R
Sbjct:   47 FTKAALKTLESIQTLEQFMRKHRKDYVDPLR--------TTEQERDSIEQEVTAFIKTCKEQIDILQVSITEEEKKLKGWLALSAEGSNADTI-------AHKQGVVLILSEKLHSVTAQFDQLRAIR 159          
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|1002314601|ref|XP_015620666.1| (PREDICTED: syntaxin-81 isoform X1 [Oryza sativa Japonica Group] >gi|218186455|gb|EEC68882.1| hypothetical protein OsI_37514 [Oryza sativa Indica Group] >gi|222616657|gb|EEE52789.1| hypothetical protein OsJ_35261 [Oryza sativa Japonica Group] >gi|937941027|dbj|BAT15939.1| Os12g0154400 [Oryza sativa Japonica Group])

HSP 1 Score: 63.5438 bits (153), Expect = 3.056e-8
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 0
Query:   60 PFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVG--GEGSRL---AHHGKVVAYLAERLQDLGNTLQNLQARR 181
            PFT+ A + L+SIR  E+ + K+R  YVD +R         T+ ERD I+  ++ F+  C  QI+IL+  + E    E GG     +G   E SRL   AH   VV  L+ERL  +      L+  R
Sbjct:   46 PFTKAAIKTLESIRELEKFIVKHRKDYVDMHR--------TTEQERDNIEHEVSVFVKACKEQIDILKNRIHE----EKGGSTKTWLGTSDESSRLDLIAHQHGVVLILSERLHSVTAQFDRLRTMR 160          
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|1191653092|gb|OTG05064.1| (putative syntaxin of plants 81 [Helianthus annuus])

HSP 1 Score: 63.5438 bits (153), Expect = 3.250e-8
Identity = 40/128 (31.25%), Postives = 65/128 (50.78%), Query Frame = 0
Query:   61 FTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEAS-------SLEAGGGNADLVGGEGSRLAHHGKVVAYLAERLQDLGNTLQNLQARR 181
            FT+ A + L+SI T E+ LKK+R  Y+DP+R         T+ ERD I+  ++ F+  C  QI++L+ ++ +          + A   NAD +       AH   VV  L+E+L  + +    L+A R
Sbjct:   47 FTKAALKTLESIGTLEQFLKKHRKDYIDPHR--------TTEEERDSIEHEVSVFVKACKEQIDVLKTSITDEEVNSKGWLGIRADNANADTI-------AHKHGVVLILSEKLHSVTSQFDQLRAVR 159          
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|1002314603|ref|XP_015620667.1| (PREDICTED: syntaxin-81 isoform X2 [Oryza sativa Japonica Group])

HSP 1 Score: 63.1586 bits (152), Expect = 3.694e-8
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 0
Query:   60 PFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVG--GEGSRL---AHHGKVVAYLAERLQDLGNTLQNLQARR 181
            PFT+ A + L+SIR  E+ + K+R  YVD +R         T+ ERD I+  ++ F+  C  QI+IL+  + E    E GG     +G   E SRL   AH   VV  L+ERL  +      L+  R
Sbjct:   46 PFTKAAIKTLESIRELEKFIVKHRKDYVDMHR--------TTEQERDNIEHEVSVFVKACKEQIDILKNRIHE----EKGGSTKTWLGTSDESSRLDLIAHQHGVVLILSERLHSVTAQFDRLRTMR 160          
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|77553055|gb|ABA95851.1| (Syntaxin 81, putative [Oryza sativa Japonica Group])

HSP 1 Score: 63.1586 bits (152), Expect = 3.715e-8
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 0
Query:   60 PFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVG--GEGSRL---AHHGKVVAYLAERLQDLGNTLQNLQARR 181
            PFT+ A + L+SIR  E+ + K+R  YVD +R         T+ ERD I+  ++ F+  C  QI+IL+  + E    E GG     +G   E SRL   AH   VV  L+ERL  +      L+  R
Sbjct:   46 PFTKAAIKTLESIRELEKFIVKHRKDYVDMHR--------TTEQERDNIEHEVSVFVKACKEQIDILKNRIHE----EKGGSTKTWLGTSDESSRLDLIAHQHGVVLILSERLHSVTAQFDRLRTMR 160          
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|1002263005|ref|XP_015635852.1| (PREDICTED: syntaxin-81 [Oryza sativa Japonica Group] >gi|38346626|emb|CAD41209.2| OSJNBa0074L08.20 [Oryza sativa Japonica Group] >gi|38346757|emb|CAE03862.2| OSJNBa0081C01.8 [Oryza sativa Japonica Group] >gi|113564960|dbj|BAF15303.1| Os04g0530400 [Oryza sativa Japonica Group] >gi|215695318|dbj|BAG90509.1| unnamed protein product [Oryza sativa Japonica Group] >gi|218195262|gb|EEC77689.1| hypothetical protein OsI_16746 [Oryza sativa Indica Group] >gi|222629256|gb|EEE61388.1| hypothetical protein OsJ_15559 [Oryza sativa Japonica Group] >gi|937915288|dbj|BAS90207.1| Os04g0530400 [Oryza sativa Japonica Group])

HSP 1 Score: 63.1586 bits (152), Expect = 4.267e-8
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 0
Query:   60 PFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVG--GEGSRL---AHHGKVVAYLAERLQDLGNTLQNLQARR 181
            PFT+ A + L+SIR  E+ + K+R  YVD +R         T+ ERD I+  ++ F+  C  QI+IL+  + E    E GG     +G   E SRL   AH   VV  L+ERL  +      L+  R
Sbjct:   46 PFTKAAIKTLESIRELEKFIVKHRKDYVDLHR--------TTEQERDNIEHEVSVFVKACKEQIDILKNRIHE----EKGGSTKTWLGTSDESSRLDLIAHQHGVVLILSERLHSVTVQFDRLRTMR 160          
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|1070985309|gb|OEL35442.1| (Syntaxin-81 [Dichanthelium oligosanthes])

HSP 1 Score: 62.3882 bits (150), Expect = 1.122e-7
Identity = 54/175 (30.86%), Postives = 76/175 (43.43%), Query Frame = 0
Query:   13 SARWTTKAASPGFPSSTCVKSRTAFATASTSTFPNKSADATHGIITDPFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVGG---EGSRL---AHHGKVVAYLAERLQDLGNTLQNLQARR 181
            S+ +  K   P F +  CV  +   A   +S    K    +      PFT  A + L+SIR  E  + K+R  YVD +R         T+ ERD I+  +  F+  C  QI+IL+  + +    E   GNA    G   E SRL   AH   VV  L ERL  +      L++ R
Sbjct:   38 SSAYGRKLNDPQFIALRCVAMQAQLAALMSSFIIRKLTPKS------PFTNAAIKTLESIRELERFIVKHRRDYVDLHR--------TTEQERDNIEHEVGVFVKACKEQIDILKNRIHD----EEKNGNAKTWLGTRDESSRLDLIAHQHGVVLILCERLHSVTAQFDRLRSMR 194          
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|449441332|ref|XP_004138436.1| (PREDICTED: syntaxin-81 [Cucumis sativus] >gi|778709443|ref|XP_011656400.1| PREDICTED: syntaxin-81 [Cucumis sativus] >gi|700190562|gb|KGN45766.1| hypothetical protein Csa_6G009450 [Cucumis sativus])

HSP 1 Score: 61.6178 bits (148), Expect = 1.334e-7
Identity = 47/159 (29.56%), Postives = 74/159 (46.54%), Query Frame = 0
Query:   60 PFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVGGEGSRLAHHGKVVAYLAERLQDLGNTLQNLQARRRH--LNGLVPSSSGADAGQACRPGSTTRTLTTPSWNS 216
            PF + A + L+SI   EE + K++  YVD YR         TD ERD I+  +A+FI  C  Q++IL+ ++ E  +   G             +AH   VV  L+E+L  + +    L+A R    ++  VP        Q  +P    R+  TP +N+
Sbjct:   46 PFIKAALKTLESIGALEEFMLKHQKDYVDMYR--------TTDQERDNIEHEVAAFIKACQEQLDILKNSINEDDAHSKGWLGPRTDDSNADTIAHKHGVVLILSEKLHSVTSQFDKLRAIRFQDIISKAVPRRK---LNQVNKP----RSANTPEYNN 189          
BLAST of EWM27197.1 vs. NCBI_GenBank
Match: gi|514802862|ref|XP_004976323.1| (PREDICTED: syntaxin-81 [Setaria italica] >gi|944233852|gb|KQK98214.1| hypothetical protein SETIT_010629mg [Setaria italica])

HSP 1 Score: 61.2326 bits (147), Expect = 2.179e-7
Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 0
Query:   60 PFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVG--GEGSRL---AHHGKVVAYLAERLQDLGNTLQNLQARR 181
            PFT  A + L+SIR  E  + K+R  YVD +R         T+ ERD I+  +  F+  C  QI+IL+  + E    E  GG    +G   E SRL   AH   VV  L+ERL  +      L++ R
Sbjct:   46 PFTNAAIKTLESIRELERFIVKHRRDYVDLHR--------TTEQERDNIEHEVGVFVKACKEQIDILKNRIHEE---EKNGGAKTWLGTRDESSRLDLIAHQHGVVLILSERLHSVTAQFDRLRSMR 161          
The following BLAST results are available for this feature:
BLAST of EWM27197.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109377|gb|EWM27197.1|0.000e+0100.00SNARE-complex protein Syntaxin-18 like protein [Na... [more]
gi|702424520|ref|XP_010067483.1|1.827e-1035.16PREDICTED: syntaxin-81 [Eucalyptus grandis] >gi|70... [more]
gi|1002314601|ref|XP_015620666.1|3.056e-835.43PREDICTED: syntaxin-81 isoform X1 [Oryza sativa Ja... [more]
gi|1191653092|gb|OTG05064.1|3.250e-831.25putative syntaxin of plants 81 [Helianthus annuus][more]
gi|1002314603|ref|XP_015620667.1|3.694e-835.43PREDICTED: syntaxin-81 isoform X2 [Oryza sativa Ja... [more]
gi|77553055|gb|ABA95851.1|3.715e-835.43Syntaxin 81, putative [Oryza sativa Japonica Group... [more]
gi|1002263005|ref|XP_015635852.1|4.267e-835.43PREDICTED: syntaxin-81 [Oryza sativa Japonica Grou... [more]
gi|1070985309|gb|OEL35442.1|1.122e-730.86Syntaxin-81 [Dichanthelium oligosanthes][more]
gi|449441332|ref|XP_004138436.1|1.334e-729.56PREDICTED: syntaxin-81 [Cucumis sativus] >gi|77870... [more]
gi|514802862|ref|XP_004976323.1|2.179e-735.43PREDICTED: syntaxin-81 [Setaria italica] >gi|94423... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3522rna3522Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications