rna3519, rna3519 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3519
Unique Name	rna3519
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3046
Alignment location	CM002461.1:598548..599952 +

Link to JBrowse

Properties


Property Name	Value
Product	histone chaperone
Orig transcript id	gnl\|cribi\|Naga_100010g77.6127.mrna
Orig protein id	gnl\|cribi\|Naga_100010g77.6127
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:598548..599952 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g77	gene3389	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3519	rna3519-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27157.1	cds3510	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:598548..599952+
coding sequence from alignment at CM002461.1:598548..599952+

mRNA sequence

>rna3519 ID=rna3519|Name=rna3519|organism=Nannochloropsis gaditana|type=mRNA|length=3046bp
AGAGGGTTACGAAAGAATGTTACGCATTGGATGCGTGACAGGTCGTAAGT
GGGTACGGGAAGCTTGCGGGCTAGCGCTGCCTCGCACGCGGAGACCGTCC
GTGCCCCCAGGGCGCCTCAAGCCTCCGTTCTCCGTCTCAGAAGCGAGCGA
CGAGGCATCGGTGCGCTCGTTCTCATCCAGCGTCAAGCGTACTCGCAAAA
AGAGCCCGGGGCAAGTCCGATTGAAGAACGAACCATTGTGCCGCGTGGCG
GCCGTGGTTGACTACGGCAACCCCATGCAAAATTTAGTCTTAGGAACTGG
TGTATTGGCAACGCAGTGTGATGGCGCGGCCGTGGGGCGGCAGGGAGGTT
GTTTAGTTCTGGGCACAGCGGTCAGTGACAGACAGGCGCCGGCAGGAGCT
GGAGATGACTTCTTACCCTTGGTAGTGGAATATCGTGAGAAGGCACATGC
ATTCGGACGCATCAACAGGAGCGTTAATCGGCGTGAGGGAGCTCAGTCAG
ACCAAGAAATATTGGCCTCACGAGTTATAGATAGGGTGATACGCCCGCTC
TTCCCCGAAGGCTTTATTTATGACACACAAGTTGTCACGACGGTTGAGTC
TTCAGATCGTCAGAATGATCTAACAGTTTTGAGTGTCAACACTGCATCAG
CGGCTCTGGCAGTCTCTAATATTCCATGGAATGGGCCCGTAGGTTGCGTC
CGTGTAGGAATGACGCCAAGCGGTAAGCTTCTTATAAATCCAACTGAGGA
TGAGATGCAGGAATCTGACTTGAATTTGCTCTACGCGGGCAACGAGCAAC
GAACACTCATGATAGAGGCTGGAGGAAGCCAAGTGCCCGAGCTTGAAATG
ATTCGAGCCCTTAAATTTGCGCATTTTCATTGCGGCGCGATCATCAAGGC
ACAGCAACAGCTGGCTGTCCAGGTCGGGTCACCCAAGCGGGTGGTCCCGC
CCATTTTGCCGTCCTCAGCCATGTGGGATCTCGCTCATGCTGTGGGTTAT
CAAAAAGCTGTGGACCTTTTTTCCGATACAAAACTCACAAAAAGCGATCG
AAGCAGAGCCGAGGCTGTATTGCATGGGGAGATACGCACCGCCGTGAAGG
AGGCATTTCCTGACTGTCATGACTTAGCCCCCGCCATTTGCTCTGATAAA
ATCCTTCGACATGGACTCCGAGATGCAGCCGTGAACAACCACAGCCGGTG
CGATGGCAGAAAATTTATGGAGCTGCGACGTATATCATCGGCGGCAGACG
TAATGCCTTCGGTCCACGGCTCTTCCATCTTCACCCGGGGAGACACCCAG
GTTCTCTGTGCGGTAACTCTTGGCTCAGAAGACGACGCGATCAAAGCTCG
GTACACGGATGACGACGAGGTCCCGGGGAAAAAGGCATTTCTGCACTACG
ACTTCCCGCCCTACAGCGTGAACGAGACTGGAAAGGTTTTCGGCAGCAAT
CGTCGCATGGTGGGGCATGGCGCACTGGCTGAGCGAGCGATTCTCCCCGT
GCTCCCTTCGTCGGACGATTTCCCGTATACTATCCGCATTACAAGCGAGG
TGACGGCCTCAAATGGCTCATCCTCAATGGCTTCGGCATGCGCAGCTTCC
CTGGCACTCATGGACGCAGGTGTACCAGTCAAAGCCCCTGTGGCTGGCGT
TTCCGTTGGGCTGCTCAGCCAACCGGAGGACGAGAGTGAGACTTTGACTG
AAACAGGAAACAGTGACGATGAGGAGCTTTGCACGACTTCCTCTCAAACG
AGGGAGGAATGCAACCTTGAAAAGGAAGAGAGTGTTCATGCGGAAGATCA
GGACGGCCGACAGAAGGTCCCAGGAGGGAAGCGGGGAAAGGCGCAGCTCT
TGGTGGACATCCTGGGCACCGAGGACCATTTCGGCGACATGGACTTCAAG
GTGGCCGGGACTTTGGACGGTATCACAGCAATACAACTTGACATCAAGTT
GGCAGGGGGGGTACCGCCTGACATTCTTGTCGATGCCATTCACGTGGCAG
CTCGGGCTCGAAGGCAGATACTGGGATTCATGGGGAAAACGATAACAGAG
CCGAGGGCCAGACTCAAAGACTCAGCCCCTGGGATGGAGGTCGTAAAATA
CTCGTTTGATCAACACAAAGACATCTTCACTCTCGAAAATCGTCGCCTGG
TGGAGGACGAATACAATGTCCGTCTTTCTTTTCCAGAACGAGGGAAGGTG
ACAGTGTTCGGCCGAGACCCCAAGAAAGTATTGGAAGCACATCGTCATGT
ACAAGAACTGGTAGCCGATATTCAGGAAGGAGAAGTCTATATGGCAACAG
TAGTGGAAGTTAAGGATTTTGGTGCTGTTTTGGAGGTGCTGCGGGGCAAA
GAAGGCTTGCTACACATGTCGGAGATTTCGCATCACAAGGGCAGTCGATC
AACTGCAGAAATGCTTGCCGTAGGACAACAGGTGAAGGTGCAATGCGCAA
CCGTGGATCGCACCCGGGGTCTAATCAAGCTGTCCCGAAAGGCGCTACTA
GATCCTGGAGAGCCCGACGATCTTCACCCCGATCTCAGTGCAGCCGGTGT
GCTCCCCAAAGTGCCAGTGCCACCTGGTACATACTTTACACACATGGATA
TGCGCAAGGCTCGTATGCGCCGGGAGGCCGCTGTGTCCGAAGACAAAGAG
AACTCTGGCCTCAAGAAGGACGTCAAAAAGAATGGTGACGTTACTAGGAA
AAGAAGCCCTCGGAAGCCTATCAAGGACGACGACAAGCGCAGTTCTTTGT
TAGTGTTGGATGGAGAAAGTTTACCGCGGAAAACAAGCTTAAGCGCCTCG
TCGGAAAATCAAGGTAAGACTCGTCAGAAGCGGGCCGTCCGGTCTAGGTC
GAGTCGTAAAAAAGATGTGAATGTTATCAATGCTCCGGAGGACAGTGGTT
CACCTGTCAAAGCGGAAGGAAATGGTACATTGGAAAATATGTCAAAAAGT
ATGCCATCGATTCCTGAAAGCTTGTCTTCAGAAGTAGAAGGCGTTCCGAG
AAAGACTATATCTTCGACAGATTTAAAGTCAGAGGATCTGGCTTAA

protein sequence of rna3519

>rna3519-protein ID=rna3519-protein|Name=rna3519|organism=Nannochloropsis gaditana|type=polypeptide|length=245bp
MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAEN
ADQDQVLEEVMVGPVPVGVNKFVLQSAAPDVSQIPEEDIIGVTVILITCT
YREQEFVRVGYYVNNEYAEPFDPDHPPRPVDLLKLVRNILADKPRVTRFP
IDWGMGMGVEGGQQQQVTEEEAAAEGVVDFDALDQQQDGEEEEGEEEEEE
EEAEDDRELEGGEESEEGSVVQGDDAMAMELSSPVPRAQMREGTV

mRNA from alignment at CM002461.1:598548..599952+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3519 ID=rna3519|Name=rna3519|organism=Nannochloropsis gaditana|type=mRNA|length=1405bp|location=Sequence derived from alignment at CM002461.1:598548..599952+ (Nannochloropsis gaditana)
TGCGACAAGATGCTCTCAGCTAACAATATTCATGCTATCATGCGTGCTCG
GGTGAGCAGTAGGCAGGCATCTCACCCCCCCTGCTCGTTCCCTCTTACAT
TTTCTACCTGCAGCGAAGTGGAGGCTCTGTGAAGACGAATGGCGCTTGTT
AACTTGACAAACATCGTGGTGCTGGATAACCCGACCAGTTTTACAAATCC
CTTCACATTTGAAGTTACATTCGAGTGCGtgcaagagctggaggatgGTA
AGAAGTGCTTATACGTTCATCGATTTTTGCCGGCTACTGTTTCACGCCGA
TTTATCTAGTCCTCTTGTCTACTTTGGCTGCATTGCCGGTATTTTGGTAC
TTTGCGCACCGTGACCTCTTCTTGTCAACTTTGGTACCGCGATACATTCT
CGGACAGTATTCGCTCGCTCTTTGTACGTCACGTTGTTTTTGACATGCAt
cctccatcttccttcGTTACCGTAGATTTGGAGTGGAAGGTACTGTACGT
ATCGTCGGCCGAAAATGCCGACCAGGACCAAGTCTTGGAAGAAGTGATGG
TGGGACCCGTACCTGTAGGGGTGAACAAGTTCGTGTTGCAGTCGGCAGCC
CCGGACGTGTCCCAGAtccccgaggaggacatcATTGGCGTCAccgtcat
cctcatcacctGCACCTACCGCGAGCAGGAGTTCGTGCGCGTAGGATACT
ATGTAAACAATGAGTACGCCGAGCCATTTGACCCTGATCATCCACCCCGG
CCCGTAGATCTTCTCAAGCTCGTGCGGAATATCTTGGCGGACAAGCCCCG
CGTCACGCGGTTCCCAATCGATTGGGGCATGGGCATGGGCGTCGAGGGCG
GTCAACAACAGCAGGTgaccgaggaagaggcagctGCAGAAGGTGTGGTA
GATTTCGATGCTCTTGATCAGCAACAGGatggcgaagaggaggaggggga
ggaggaggaggaggaggaggaagcagaggacgATCGtgagttggagggag
gagaggaaagcgaggaagggagtgtggTGCAGGGGGATGATGCCATGGCA
ATGGAATTGTCATCACCTGTACCGAGAGCACAAATGCGCGAAGGAACAGT
ATGACGAGGCCTCAATGAGCGGAGAGCTCTCGTCTGCGGGGCGTCCGAGA
TGGGCGATGTGTCGAGTCGGAGGGACAGGGTATGCGGATAGATGTACAGG
CAAGTAATGCTCGACTCAGGGAGCCGGAAGGAAGCAATgacatgaaaaaa
aaaacaggcGAGCATGGATGAAATCAAGACGCGGGCGACAGTGGGCGCAA
AAGCAACGACAAGAAGTATGAGTCGAAAGCGAAATCTTGTCCCCTGCCTG
CCCGTCGGGCCGCCGACCTCTCtgttttcctttcttccaccCGCTCGTCT
CTCTA

Coding sequence (CDS) from alignment at CM002461.1:598548..599952+

>rna3519 ID=rna3519|Name=rna3519|organism=Nannochloropsis gaditana|type=CDS|length=1476bp|location=Sequence derived from alignment at CM002461.1:598548..599952+ (Nannochloropsis gaditana)
ATGGCGCTTGTTAACTTGACAAACATCGTGGTGCTGGATAACCCGACCAG
TTTTACAAATCCCTTCACATTTGAAGTTACATTCGAGTGCGtgcaagagc
tggaggatgATTTGGAGTGGAAGGTACTGTACGTATCGTCGGCCGAAAAT
GCCGACCAGGACCAAGTCTTGGAAGAAGTGATGGTGGGACCCGTACCTGT
AGGGGTGAACAAGTTCGTGTTGCAGTCGGCAGCCCCGGACGTGTCCCAGA
tccccgaggaggacatcATTGGCGTCAccgtcatcctcatcacctGCACC
TACCGCGAGCAGGAGTTCGTGCGCGTAGGATACTATGTAAACAATGAGTA
CGCCGAGCCATTTGACCCTGATCATCCACCCCGGCCCGTAGATCTTCTCA
AGCTCGTGCGGAATATCTTGGCGGACAAGCCCCGCGTCACGCGGTTCCCA
ATCGATTGGGGCATGGGCATGGGCGTCGAGGGCGGTCAACAACAGCAGGT
gaccgaggaagaggcagctGCAGAAGGTGTGGTAGATTTCGATGCTCTTG
ATCAGCAACAGGatggcgaagaggaggagggggaggaggaggaggaggag
gaggaagcagaggacgATCGtgagttggagggaggagaggaaagcgagga
agggagtgtggTGCAGGGGGATGATGCCATGGCAATGGAATTGTCATCAC
CTGTACCGAGAGCACAAATGCGCGAAGGAACAGTATGAATGGCGCTTGTT
AACTTGACAAACATCGTGGTGCTGGATAACCCGACCAGTTTTACAAATCC
CTTCACATTTGAAGTTACATTCGAGTGCGtgcaagagctggaggatgATT
TGGAGTGGAAGGTACTGTACGTATCGTCGGCCGAAAATGCCGACCAGGAC
CAAGTCTTGGAAGAAGTGATGGTGGGACCCGTACCTGTAGGGGTGAACAA
GTTCGTGTTGCAGTCGGCAGCCCCGGACGTGTCCCAGAtccccgaggagg
acatcATTGGCGTCAccgtcatcctcatcacctGCACCTACCGCGAGCAG
GAGTTCGTGCGCGTAGGATACTATGTAAACAATGAGTACGCCGAGCCATT
TGACCCTGATCATCCACCCCGGCCCGTAGATCTTCTCAAGCTCGTGCGGA
ATATCTTGGCGGACAAGCCCCGCGTCACGCGGTTCCCAATCGATTGGGGC
ATGGGCATGGGCGTCGAGGGCGGTCAACAACAGCAGGTgaccgaggaaga
ggcagctGCAGAAGGTGTGGTAGATTTCGATGCTCTTGATCAGCAACAGG
atggcgaagaggaggagggggaggaggaggaggaggaggaggaagcagag
gacgATCGtgagttggagggaggagaggaaagcgaggaagggagtgtggT
GCAGGGGGATGATGCCATGGCAATGGAATTGTCATCACCTGTACCGAGAG
CACAAATGCGCGAAGGAACAGTATGA

Synonyms

Publications