rna3518, rna3518 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3518
Unique Name	rna3518
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1460
Alignment location	CM002461.1:595041..598086 +

Link to JBrowse

Properties


Property Name	Value
Product	polyribonucleotide nucleotidyltransferase 1
Orig transcript id	gnl\|cribi\|Naga_100010g76.6184.mrna
Orig protein id	gnl\|cribi\|Naga_100010g76.6184
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:595041..598086 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g76	gene3388	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3518	rna3518-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27214.1	cds3509	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:595041..598086+
coding sequence from alignment at CM002461.1:595041..598086+

mRNA sequence

>rna3518 ID=rna3518|Name=rna3518|organism=Nannochloropsis gaditana|type=mRNA|length=1460bp
GCATCCCATCCCGATTCACTTGGGTGCGCTGTATGAAACTGACTCAACGA
CGACGACGACGAGGATTTCATGTGAGTACAGAAACTCGAAGACATGGTGA
GTACCGGGGTTTGCAGGTGTCCTCGACGCTCCTCTCGACTTAAGCCCTCG
GGGTCAAAGCGTCTGACACGTACTTCCGACAGCCAAGTGACCCCTGTCTG
CCATGTCATCTTTATTGGCAGTATTAGCTCTGTACTGACATTTCCAGGGA
GTCCACCTACAGCAACTGTTCCGTGTACATGCCCGACATAATAATTTCCC
CCCTGCCAAAATTACAATTATTCGCAAGACATCTCGCAGTGATAATCATG
TGATATGACTTTATAAGTAGATATGGATGAATGGCTGTACCTTCTACATC
GTAATCCGTACGTCTAATGATGAAGGCCTATTTAGCATGCGGTTTTCCCT
CTCTTTTTCAACCATAGCGACACTCAGCATTGTTCAGCTCGCCTCCTGTT
CCATTCGTGGAGCGAGTGGATTCGTTTCGTCAGGAGCACCCAAAAAACTA
TTCTGGACGCGTTCAGCTAGCTTTTCCGCAGTAGGTGCCCGATCCCGTTC
AACGACGGTACCTTCCATGCTTTTCAGTCGCATGTTTGCTACACAAGCAC
AAGACCCGGCCACGAATTTGGCCGCGAAGCCGGCTTTAACTAAAGTGAAA
ACCGAGGAGGAATGGAAGCAAATTCTGAGCCCCACTGCCTTCAAGGTTCT
CCGGCGCAAAGCCACGGAGCCTCGAAAAGTAACCGTGGCGAAAGGGGGCT
GGGATGACCACAATGCCAAGGGGACATACGTGTGCACAGGGTGCAAGACG
CCTCTATACACGTCGGCCATGAAGTTTGATTGCGGGTGCGGCTGGCCTGG
TTTCTGGACGAACATCAAAGACGCCGTCTACGAGCAGCGAGACGCGGACG
GTTTTCGGTGCGAGATCCTGTGTTCAGAGTGCGACGGGCACCTTGGGCAC
GTTTTCCGCAACGAAGGCTTCGGAAATCCGCCTCCGGATGAGAGGCACTG
CGTAAACTCAGTGTCTGTGGGCTTCGTGCCCGAGGGGACCGATGCGGTCC
AGCCCTGCACGTACGAGGGCCCCGTGTACGAATGAGGTCGCTGATAACAC
TGGAAAATAGATTAAACAGACCAAAGAGTCTTCTTCTGTCGAGCACATGG
CTGTAGTCGCAGGGGGCCAGGAAATGTGCAGGGAATTTTTGATTTGGTGA
ACCATGGTAGTGGACGTCCAACGCTGTATTTCTCTTCTAACAATGGAGCA
TGGGTCTCCTCTAAAATCAAGAGCTTTCTTCAAGCTTTGATAGGGGATTA
TGGGAGTAGTCACTTACAAATGGCAGACAATGCGCTGGAACTCAGACTCA
TGGCTTCTTTGCCTTTTCCGCTCAGCACGAAAGAAAAATTCTTCATTTCA
ACCCGTCCCC

protein sequence of rna3518

>rna3518-protein ID=rna3518-protein|Name=rna3518|organism=Nannochloropsis gaditana|type=polypeptide|length=1009bp
MLRIGCVTGRKWVREACGLALPRTRRPSVPPGRLKPPFSVSEASDEASVR
SFSSSVKRTRKKSPGQVRLKNEPLCRVAAVVDYGNPMQNLVLGTGVLATQ
CDGAAVGRQGGCLVLGTAVSDRQAPAGAGDDFLPLVVEYREKAHAFGRIN
RSVNRREGAQSDQEILASRVIDRVIRPLFPEGFIYDTQVVTTVESSDRQN
DLTVLSVNTASAALAVSNIPWNGPVGCVRVGMTPSGKLLINPTEDEMQES
DLNLLYAGNEQRTLMIEAGGSQVPELEMIRALKFAHFHCGAIIKAQQQLA
VQVGSPKRVVPPILPSSAMWDLAHAVGYQKAVDLFSDTKLTKSDRSRAEA
VLHGEIRTAVKEAFPDCHDLAPAICSDKILRHGLRDAAVNNHSRCDGRKF
MELRRISSAADVMPSVHGSSIFTRGDTQVLCAVTLGSEDDAIKARYTDDD
EVPGKKAFLHYDFPPYSVNETGKVFGSNRRMVGHGALAERAILPVLPSSD
DFPYTIRITSEVTASNGSSSMASACAASLALMDAGVPVKAPVAGVSVGLL
SQPEDESETLTETGNSDDEELCTTSSQTREECNLEKEESVHAEDQDGRQK
VPGGKRGKAQLLVDILGTEDHFGDMDFKVAGTLDGITAIQLDIKLAGGVP
PDILVDAIHVAARARRQILGFMGKTITEPRARLKDSAPGMEVVKYSFDQH
KDIFTLENRRLVEDEYNVRLSFPERGKVTVFGRDPKKVLEAHRHVQELVA
DIQEGEVYMATVVEVKDFGAVLEVLRGKEGLLHMSEISHHKGSRSTAEML
AVGQQVKVQCATVDRTRGLIKLSRKALLDPGEPDDLHPDLSAAGVLPKVP
VPPGTYFTHMDMRKARMRREAAVSEDKENSGLKKDVKKNGDVTRKRSPRK
PIKDDDKRSSLLVLDGESLPRKTSLSASSENQGKTRQKRAVRSRSSRKKD
VNVINAPEDSGSPVKAEGNGTLENMSKSMPSIPESLSSEVEGVPRKTISS
TDLKSEDLA

mRNA from alignment at CM002461.1:595041..598086+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3518 ID=rna3518|Name=rna3518|organism=Nannochloropsis gaditana|type=mRNA|length=3046bp|location=Sequence derived from alignment at CM002461.1:595041..598086+ (Nannochloropsis gaditana)
AGAGGGTTACGAAAGAATGTTACGCATTGGATGCGTGACAGGTCGTAAGT
GGGTACGGGAAGCTTGCGGGCTAGCGCTGCCTCGCACGCGGAGACCGTCC
GTGCCCCCAGGGCGCCTCAAGCCTCCGTTCTCCGTCTCAGAAGCGAGCGA
CGAGGCATCGGTGCGCTCGTTCTCATCCAGCGTCAAGCGTACTCGCAAAA
AGAGCCCGGGGCAAGTCCGATTGAAGAACGAACCATTGTGCCGCGTGGCG
GCCGTGGTTGACTACGGCAACCCCATGCAAAATTTAGTCTTAGGAACTGG
TGTATTGGCAACGCAGTGTGATGGCGCGGCCGtggggcggcagggaggtT
GTTTAGTTCTGGGCACAGCGGTCAGTGACAGACAGGCGCCGGCAGGAGCT
GGAGATGACTTCTTACCCTTGGTAGTGGAATATCGTGAGAAGGCACATGC
ATTCGGACGCATCAACAGGAGCGTTAATCGGCGTGAGGGAGCTCAGTCAG
ACCAAGAAATATTGGCCTCACGAGTTATAGATAGGGTGATACGCCCGCTC
TTCCCCGAAGGCTTTATTTATGACACACAAGTTGTCACGACGGTTGAGTC
TTCAGATCGTCAGAATGATCTAACAGTTTTGAGTGTCAACACTGCATCAG
CGGCTCTGGCAGTCTCTAATATTCCATGGAATGGGCCCGTAGGTTGCGTC
CGTGTAGGAATGACGCCAAGCGGTAAGCTTCTTATAAATCCAACTGAGGA
TGAGATGCAGGAATCTGACTTGAATTTGCTCTACGCGGGCAACGAGCAAC
GAACACTCATGATAGAGGCTGGAGGAAGCCAAGTGCCCGAGCTTGAAATG
ATTCGAGCCCTTAAATTTGCGCATTTTCATTGCGGCGCGATCATCAAGGC
ACAGCAACAGCTGGCTGTCCAGGTCGGGTCACCCAAGCGGGTGGTCCCGC
CCATTTTGCCGTCCTCAGCCATGTGGGATCTCGCTCATGCTGTGGGTTAT
CAAAAAGCTGTGGACCTTTTTTCCGATACAAAACTCACAAAAAGCGATCG
AAGCAGAGCCGAGGCTGTATTGCATGGGGAGATACGCACCGCCGTGAAGG
AGGCATTTCCTGACTGTCATGACTTAGCCCCCGCCATTTGCTCTGATAAA
ATCCTTCGACATGGACTCCGAGATGCAGCCGTGAACAACCACAGCCGGTG
CGATGGCAGAAAATTTATGGAGCTGCGACGTATATCATCGGCGGCAGACG
TAATGCCTTCGGTCCACGGCTCTTCCATCTTCACCCGGGGAGACACCCAG
GTTCTCTGTGCGGTAACTCTTGGCTCAGAAGACGACGCGATCAAAGCTCG
GTACACGGATGACGACGAGGTcccggggaaaaaggcatttCTGCACTACG
ACTTCCCGCCCTACAGCGTGAACGAGACTGGAAAGGTTTTCGGCAGCAAT
CGTCGCATGGTGGGGCATGGCGCACTGGCTGAGCGAGCGAttctccccgt
gctcccttCGTCGGACGATTTCCCGTATACTATCCGCATTACAAGCGAGG
TGACGGCCTCAAATGGCTCATCCTCAATGGCTTCGGCATGCGCAGCTTCC
CTGGCACTCATGGACGCAGGTGTACCAGTCAAAGCCCCTGTGGCTGGCGT
TTCCGTTGGGCTGCTCAGCCAACCGGAGGACGAGAGTGAGACTTTGACTG
AAACAGGAAACAGTGACGATGAGGAGCTTTGCACGACTTCCTCTcaaacg
agggaggaatgcaaccttgaaaaggaagagagtgTTCATGCGGAAGATCA
GGACGGCCGACAGAAGGTcccaggagggaagcggggaaagGCGCAGCTCT
TGGTGGACATCCTGGGCACCGAGGACCATTTCGGCGACATGGACTTCAAG
GTGGCCGGGACTTTGGACGGTATCACAGCAATACAACTTGACATCAAGTT
GGCAGGGGGGGTACCGCCTGACATTCTTGTCGATGCCATTCACGTGGCAG
CTCGGGCTCGAAGGCAGATACTGGGATTCATGGGGAAAACGATAACAGAG
CCGAGGGCCAGACTCAAAGACTCAGCCCCTGGGATGGAGGTCGTAAAATA
CTCGTTTGATCAACACAAAGACATCTTCACTCTCGAAAATCGTcgcctgg
tggaggacgaatACAATGTCCGTCTTTCTTTTCCAGAACGAGGGAAGGTG
ACAGTGTTCGGCCGAGACCCCAAGAAAGTATTGGAAGCACATCGTCATGT
ACAAGAACTGGTAGCCGATAttcaggaaggagaagtctATATGGCAACAG
TAGTGGAAGTTAAGGATTTTGGTGCTGTTTTGGAGGTGCTGCGGGGCAAA
GAAGGCTTGCTACACATGTCGGAGATTTCGCATCACAAGGGCAGTCGATC
AACTGCAGAAATGCTTGCCGTAGGACAACAGGTGAAGGTGCAATGCGCAA
CCGTGGATCGCACCCGGGGTCTAATCAAGCTGTCCCGAAAGGCGCTACTA
GATCCTGGAGAGCCCGACGATCTTCACCCCGATCTCAGTGCAGCCGGTGT
GCTCCCCAAAGTGCCAGTGCCACCTGGTACATACTTTACACACATGGATA
TGCGCAAGGCTCGTATGCGCCGGGAGGCCGCTGTGTCCGAAGACAAAGAG
AACTCTGGCCTCAAGAAGGACGTCAAAAAGAATGGTGACGTTACTAGGAA
AAGAAGCCCTCGGAAGCCTATCAAGGACGACGACAAGCGCAGTTCTTTGT
TAGTGTTGGATGGAGAAAGTTTACCGCGGAAAACAAGCTTAAGCGCCTCG
TCGGAAAATCAAGGTAAGACTCGTCAGAAGCGGGCCGTCCGGTCTAGGTC
GAGTCGTAAAAAAGATGTGAATGTTATCAATGCTCCGGAGGACAGTGGTT
CACCTGTCAAAGCGGAAGGAAATGGTACATTGGAAAATATGTCAAAAAGT
ATGCCATCGATTCCTGAAAGCTTGTCTTCAGAAGTAGAAGGCGTTCCGAG
AAAGACTATATCTTCGACAGATTTAAAGTCAGAGGATCTGGCTTAA

Coding sequence (CDS) from alignment at CM002461.1:595041..598086+

>rna3518 ID=rna3518|Name=rna3518|organism=Nannochloropsis gaditana|type=CDS|length=3030bp|location=Sequence derived from alignment at CM002461.1:595041..598086+ (Nannochloropsis gaditana)
ATGTTACGCATTGGATGCGTGACAGGTCGTAAGTGGGTACGGGAAGCTTG
CGGGCTAGCGCTGCCTCGCACGCGGAGACCGTCCGTGCCCCCAGGGCGCC
TCAAGCCTCCGTTCTCCGTCTCAGAAGCGAGCGACGAGGCATCGGTGCGC
TCGTTCTCATCCAGCGTCAAGCGTACTCGCAAAAAGAGCCCGGGGCAAGT
CCGATTGAAGAACGAACCATTGTGCCGCGTGGCGGCCGTGGTTGACTACG
GCAACCCCATGCAAAATTTAGTCTTAGGAACTGGTGTATTGGCAACGCAG
TGTGATGGCGCGGCCGtggggcggcagggaggtTGTTTAGTTCTGGGCAC
AGCGGTCAGTGACAGACAGGCGCCGGCAGGAGCTGGAGATGACTTCTTAC
CCTTGGTAGTGGAATATCGTGAGAAGGCACATGCATTCGGACGCATCAAC
AGGAGCGTTAATCGGCGTGAGGGAGCTCAGTCAGACCAAGAAATATTGGC
CTCACGAGTTATAGATAGGGTGATACGCCCGCTCTTCCCCGAAGGCTTTA
TTTATGACACACAAGTTGTCACGACGGTTGAGTCTTCAGATCGTCAGAAT
GATCTAACAGTTTTGAGTGTCAACACTGCATCAGCGGCTCTGGCAGTCTC
TAATATTCCATGGAATGGGCCCGTAGGTTGCGTCCGTGTAGGAATGACGC
CAAGCGGTAAGCTTCTTATAAATCCAACTGAGGATGAGATGCAGGAATCT
GACTTGAATTTGCTCTACGCGGGCAACGAGCAACGAACACTCATGATAGA
GGCTGGAGGAAGCCAAGTGCCCGAGCTTGAAATGATTCGAGCCCTTAAAT
TTGCGCATTTTCATTGCGGCGCGATCATCAAGGCACAGCAACAGCTGGCT
GTCCAGGTCGGGTCACCCAAGCGGGTGGTCCCGCCCATTTTGCCGTCCTC
AGCCATGTGGGATCTCGCTCATGCTGTGGGTTATCAAAAAGCTGTGGACC
TTTTTTCCGATACAAAACTCACAAAAAGCGATCGAAGCAGAGCCGAGGCT
GTATTGCATGGGGAGATACGCACCGCCGTGAAGGAGGCATTTCCTGACTG
TCATGACTTAGCCCCCGCCATTTGCTCTGATAAAATCCTTCGACATGGAC
TCCGAGATGCAGCCGTGAACAACCACAGCCGGTGCGATGGCAGAAAATTT
ATGGAGCTGCGACGTATATCATCGGCGGCAGACGTAATGCCTTCGGTCCA
CGGCTCTTCCATCTTCACCCGGGGAGACACCCAGGTTCTCTGTGCGGTAA
CTCTTGGCTCAGAAGACGACGCGATCAAAGCTCGGTACACGGATGACGAC
GAGGTcccggggaaaaaggcatttCTGCACTACGACTTCCCGCCCTACAG
CGTGAACGAGACTGGAAAGGTTTTCGGCAGCAATCGTCGCATGGTGGGGC
ATGGCGCACTGGCTGAGCGAGCGAttctccccgtgctcccttCGTCGGAC
GATTTCCCGTATACTATCCGCATTACAAGCGAGGTGACGGCCTCAAATGG
CTCATCCTCAATGGCTTCGGCATGCGCAGCTTCCCTGGCACTCATGGACG
CAGGTGTACCAGTCAAAGCCCCTGTGGCTGGCGTTTCCGTTGGGCTGCTC
AGCCAACCGGAGGACGAGAGTGAGACTTTGACTGAAACAGGAAACAGTGA
CGATGAGGAGCTTTGCACGACTTCCTCTcaaacgagggaggaatgcaacc
ttgaaaaggaagagagtgTTCATGCGGAAGATCAGGACGGCCGACAGAAG
GTcccaggagggaagcggggaaagGCGCAGCTCTTGGTGGACATCCTGGG
CACCGAGGACCATTTCGGCGACATGGACTTCAAGGTGGCCGGGACTTTGG
ACGGTATCACAGCAATACAACTTGACATCAAGTTGGCAGGGGGGGTACCG
CCTGACATTCTTGTCGATGCCATTCACGTGGCAGCTCGGGCTCGAAGGCA
GATACTGGGATTCATGGGGAAAACGATAACAGAGCCGAGGGCCAGACTCA
AAGACTCAGCCCCTGGGATGGAGGTCGTAAAATACTCGTTTGATCAACAC
AAAGACATCTTCACTCTCGAAAATCGTcgcctggtggaggacgaatACAA
TGTCCGTCTTTCTTTTCCAGAACGAGGGAAGGTGACAGTGTTCGGCCGAG
ACCCCAAGAAAGTATTGGAAGCACATCGTCATGTACAAGAACTGGTAGCC
GATAttcaggaaggagaagtctATATGGCAACAGTAGTGGAAGTTAAGGA
TTTTGGTGCTGTTTTGGAGGTGCTGCGGGGCAAAGAAGGCTTGCTACACA
TGTCGGAGATTTCGCATCACAAGGGCAGTCGATCAACTGCAGAAATGCTT
GCCGTAGGACAACAGGTGAAGGTGCAATGCGCAACCGTGGATCGCACCCG
GGGTCTAATCAAGCTGTCCCGAAAGGCGCTACTAGATCCTGGAGAGCCCG
ACGATCTTCACCCCGATCTCAGTGCAGCCGGTGTGCTCCCCAAAGTGCCA
GTGCCACCTGGTACATACTTTACACACATGGATATGCGCAAGGCTCGTAT
GCGCCGGGAGGCCGCTGTGTCCGAAGACAAAGAGAACTCTGGCCTCAAGA
AGGACGTCAAAAAGAATGGTGACGTTACTAGGAAAAGAAGCCCTCGGAAG
CCTATCAAGGACGACGACAAGCGCAGTTCTTTGTTAGTGTTGGATGGAGA
AAGTTTACCGCGGAAAACAAGCTTAAGCGCCTCGTCGGAAAATCAAGGTA
AGACTCGTCAGAAGCGGGCCGTCCGGTCTAGGTCGAGTCGTAAAAAAGAT
GTGAATGTTATCAATGCTCCGGAGGACAGTGGTTCACCTGTCAAAGCGGA
AGGAAATGGTACATTGGAAAATATGTCAAAAAGTATGCCATCGATTCCTG
AAAGCTTGTCTTCAGAAGTAGAAGGCGTTCCGAGAAAGACTATATCTTCG
ACAGATTTAAAGTCAGAGGATCTGGCTTAA

Synonyms

Publications