rna3505, rna3505 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3505
Unique Name	rna3505
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1593
Alignment location	CM002461.1:564772..567082 -

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Properties


Property Name	Value
Product	casein kinase 2 subunit beta
Orig transcript id	gnl\|cribi\|Naga_100010g63.6176.mrna
Orig protein id	gnl\|cribi\|Naga_100010g63.6176
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:564772..567082 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g63	gene3376	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27206.1	cds3496	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3505	rna3505-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:564772..567082-
coding sequence from alignment at CM002461.1:564772..567082-

mRNA sequence

>rna3505 ID=rna3505|Name=rna3505|organism=Nannochloropsis gaditana|type=mRNA|length=1593bp
TGCTGGCCTCATCGTGTGTCGAACTCTAACACTCCTGCGTGTCTTGCATT
GTTACAAAGGCAAATTAAAAACATTACACTGGAGCTTGGTCTTCGCGCCT
CGGCTTCGCGATGGCCAACGCCCTTTCGCCTAGGGGCCAAATCTCTACCA
TGTCGTCACCATCCTTTTCTTCTTCCCGGAGCTGGATGATTTCATCAATA
CTCACGAAGCTACTTGGAATAACTAAGTACTTGTGGCCTCGTGCACCAGT
CTATCTGCCTTTTTCCGATTTTGTGAAGCATGCACAGGAGGGCAAATTGG
CTTCCGTGATGATGAATCAAGACAAATTTGAGGTTCAAATGAAGGCGGGA
GACAGTATCATGTTGGCTGGAGGCGCCAGCCTCGTGCCCTCTTCAAAAGT
GTCCCGACAGCAAATATACCACACATCTGTCATCCCGCAACTCGACAGAC
AATGGATTGTCGAGATGCTTCAAAAAAATGGCGTCAGGTTCGGGACCGGT
ACACCTTCCTGGAGTCGGCGCATGGTCACACTGCTACTGACGATCGCCCC
TTTCTTGTACTTGGCATTGGTCTATCGAATGATGAACAAACTCTATAACC
CTACAGATAGCGTTGGTAGGGAGCGAAAAAATCTTCAGCAGAAACCAAAA
AAACGTGTCATCACATTCAAGGATGTTGCCGGCATCGATGCAGCCAAATT
GGAGTTGGTGGAAGTAGTTAATTTCTTGAGAGACCGAGCCCGGTATGACG
CCATTGGCGCCCGTCTGCCAAAAGGTATACTACTATCAGGAGCTCCAGGC
ACTGGCAAGACCTTGTTGGCTCGGGCTGTTGCGAATGAGGCGGGCGTGTC
ATTCATAAGTTGCTCTGCAAGTGAATTCTGCGAGCTCCTCGTTGGTCGAG
GCGCTGCCCGCATGCGCGACCTCTTCCAGCGTGGCTTCTCAAGCTCTCCT
TGCATAATTTTCATTGATGAACTGGATGCGTTGGCGAAAACACGCGGTTC
CTTTTCTTCAAATGATGAGCGGGAGCAGACGTTAAATCAGCTTTTATGTG
AAATGGATGGTTTTGAGGGTGGAGAAAATTGTGTCCTGGTCATCGCAGCT
ACAAATCGTCCCGAGGTGCTTGATCCAGCCCTTATACGACCAGGTCGCTT
CGACCGCCATATTGCGGTGGGTCTGCCAGACACACGCGGTCGCCGGGCCA
TCCTGGACGTTCATTCACGTCACGTTTGCCTGGCACCTGGCGTAGACATG
CAGCGCATTGCCACCAGGTCCAAAGGATACTCTGGAGCAGAACTAAGTAA
TGTGGTCAACGAAGCCGCCCTTCTCGCCGTGCGAGCAGGCTTAGGGGTAA
CAACACAGGCGTGCTTTGAGGAAGCCCTGGAGCGCAACAATCAATCGCGG
ATATTGGCCTTGCAATTAGACGGGTTTGGCAACGGCGACATGGGCGTCAA
CTCTACTGTACAAGACCTCCATAACAAATTGCAGAACCGCAATAGGACAA
ACCTTCAGGATCCATGACAAGAACTCGAGATTGTTGTACATTCTGAGATA
ATATCTCTTGAAGCTCTGAAGGAATTCAAATGGCTATTGTTAT

protein sequence of rna3505

>rna3505-protein ID=rna3505-protein|Name=rna3505|organism=Nannochloropsis gaditana|type=polypeptide|length=483bp
MLLSQVVRFLLLSWVEGWGCRRSRSPEQFMANNKGGLVGSSHANSSSSAV
SRDRNGTNGGCGETVGEAGWMSSTNVFTDGTHISHDKLIIDESSATGGRP
KAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWI
SQFVRAPGHEFFCAVPCSFLAEDFNWLGLPLDMAAVDLLLERVAKGGSTK
RCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLAC
CGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVY
WPADASHQQLNGAYWGPTFAHLFLLAFPELNLEAAHSWTPIPSIFRQDGV
NRRYDPVRLGRKCLGRGGITTDIQATSSIDLDDDLCHLTERESYVPRIFG
FRLECKLRKQDVTTQQRSEQKDNSTRLCATRPSKGKSLTGTSFKGAVTTK
ICFWKSCGVARFIRGRFFVAVCFFKKRNAESDQ

mRNA from alignment at CM002461.1:564772..567082-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3505 ID=rna3505|Name=rna3505|organism=Nannochloropsis gaditana|type=mRNA|length=2311bp|location=Sequence derived from alignment at CM002461.1:564772..567082- (Nannochloropsis gaditana)
ACTTGCAGTCCCGTCTATCAGGAAACACATTTCTATATGTTCTCAACCAC
TACGAGCGTATAACTCCAGTTACAAAACAGACCTGAAAACTAGTAGCTCT
CTCAGCCTGAGGCCCGGGGGAGGCAGTTAGGACAAGACAGAGCAGGAGAA
TCACAAAAACTGCTGACACCCCCGGACTCCCGAAATTTTTGAATCAACGA
CTCTTCAATAAGCATGGGAAGCATTGCAAAAAGAGTTACGACATAAGTAA
CGATATCAAGCGCAGCGATAGCGGAAAGGAGGACACAAGCAGCGCCGTAA
GAGCAAGCCACCACGAGACGACAAGGAGACGAACTTTCCAGAAACAGACT
TTTAATACACCAAAAAGTGAATTAATTGAAAACATTCGAAATATAGAATC
AATAGAGTGATTTAGAACTTGGTGATAGCGGAAGGAAAGTTGGTAAGATA
GTTTAACAGCGCTCAAGCATAACGTATCACAGAGCGACGCATTTCACCAC
TGAGCGATGATCGACCATTATCGTCCGAGAAAATGTAAAAACGCAGTATG
GGAGATTGACAGAACCAAGCGAGCACGAAGACATGGCATCACGAAAAAAC
TGAAAATCTAACCTCAGTTAATTTTCCTGCATTTTCCAGTGATTGTGCTA
TACCCGCGATGCCTTAGGCTTGTAAGGGCCTCAGAGATAGACTACCTTTG
AGTTGAACGAGTATGCGACCAAACCGATGGCGCTGAATGCTCCTTTCGCA
AGTTGTACGTTTCCTATTACTATCTTGGGTCGAAGGATGGGGTTGCCGAC
GGTCGCGCAGTCCTGAACAGTTCATGGCGAACAATAAGGGAGGCCTTGTT
GGAAGCTCTCACGCGAATTCCTCTTCAAGTGCCGTCTCGCGGGATCGCAA
TGGAACCAATGGAGGTTGTGGAGAAACTGTTGGCGAAGCAGGATGGATGT
CGTCGACGAATGTCTTCACCGATGGGACTCATATTTCTCACGATAAGTTA
ATCATTGACGAGAGCAGCGCGACCGGAGGACGCCCCAAGGCTATCTTCGG
TGCTGCCATCATCAAAGATTTGCGGTGTATCCGAAATGCAATATGTGAAG
ATAAGCCAGAGGACGACAAGTTGGAGGATAGCAGCCTGGAGGCTCTGCTG
TCGAGCCCTGAGTCGGATGACGAAAGCTCCTGGATCAGTCAATTTGTTCG
TGCGCCAGGTCACGAATTCTTCTGCGCCGTGCCATGTTCTTTCCTGGCAG
AAGACTTTAATTGGTTGGGGCTCCCTCTCGACATGGCTGCAGTCGACCTC
CTCCTTGAGCGCGTCGCGAAAGGCGGCTCAACCAAACGCTGTCGGTCACT
ACCTCGGGACGAGGCAGCTACCCAACGCATGTATGGACTCATCCATGCGC
GCTTCATTGTCACACAAAAAGGCTTGCAGGTGATGCGAGACAAATTCCAA
CAAGCACATTTTGGTCGCTGTCCCCGTCTGGCGTGCTGTGGTCAGCCAGT
GCTCCCCCTGGGCAACTCGAACGAGGAAATCGGCGAAACCGATCAAAACA
AAGGTAAGGTGGTTGAGAAGCGACACAGGAGTGATGGCGCTAGGGAATGC
GTTAAAATCTTTTGCCCACGGTGTCGAGAAGTCTATTGGCCCGCGGACGC
ATCCCACCAGCAGCTCAACGGAGCCTACTGGGGGCCAACGTTCGCCCATC
TTTTCCTGTTGGCATTCCCGGAGCTGAACCTGGAAGCAGCCCACTCCTGG
ACCCCAATACCGTCAATATTTCGGCAGGATGGAGTTAATCGCAGGTACGA
CCCGGTCAGGCTCGGCCGCAAGTGTCTTGGCCGCGGAGGCATTACGACTG
ACATCCAGGCTACCTCCTCTATCGACTTGGACGACGACCTTTGTCACTTG
ACGGAGAGAGAGTCATACGTACCGCGCATCTTTGGCTTTCGCTTGGAATG
TAAGCTACGCAAGCAAGACGTAACGACGCAACAAAGAAGTGAACAGAAAG
ATAACTCTACGCGGCTGTGTGCAACCAGACCGTCGAAAGGCAAATCCCTT
ACTGGGACAAGCTTCAAGGGAGCGGTCACGACAAAAATTTGTTTTTGGAA
GAGCTGTGGCGTGGCACGCTTCATTCGAGGAAGATTTTTTGTAGCGGTGT
GCTTTTTTAAGAAGAGAAACGCAGAGAGTGATCAATAACTTTAGATCCCC
TTCGCGAAGGTCTCGATGTAAATTAAAACAATAAGTTGAATATTTTAGAG
CCCACCAGACAAATTCCCTCGCAAAAATTAATACAATAAAAATAAAAGAA
GTGTTTAGTGT

Coding sequence (CDS) from alignment at CM002461.1:564772..567082-

>rna3505 ID=rna3505|Name=rna3505|organism=Nannochloropsis gaditana|type=CDS|length=1452bp|location=Sequence derived from alignment at CM002461.1:564772..567082- (Nannochloropsis gaditana)
ATGCTCCTTTCGCAAGTTGTACGTTTCCTATTACTATCTTGGGTCGAAGG
ATGGGGTTGCCGACGGTCGCGCAGTCCTGAACAGTTCATGGCGAACAATA
AGGGAGGCCTTGTTGGAAGCTCTCACGCGAATTCCTCTTCAAGTGCCGTC
TCGCGGGATCGCAATGGAACCAATGGAGGTTGTGGAGAAACTGTTGGCGA
AGCAGGATGGATGTCGTCGACGAATGTCTTCACCGATGGGACTCATATTT
CTCACGATAAGTTAATCATTGACGAGAGCAGCGCGACCGGAGGACGCCCC
AAGGCTATCTTCGGTGCTGCCATCATCAAAGATTTGCGGTGTATCCGAAA
TGCAATATGTGAAGATAAGCCAGAGGACGACAAGTTGGAGGATAGCAGCC
TGGAGGCTCTGCTGTCGAGCCCTGAGTCGGATGACGAAAGCTCCTGGATC
AGTCAATTTGTTCGTGCGCCAGGTCACGAATTCTTCTGCGCCGTGCCATG
TTCTTTCCTGGCAGAAGACTTTAATTGGTTGGGGCTCCCTCTCGACATGG
CTGCAGTCGACCTCCTCCTTGAGCGCGTCGCGAAAGGCGGCTCAACCAAA
CGCTGTCGGTCACTACCTCGGGACGAGGCAGCTACCCAACGCATGTATGG
ACTCATCCATGCGCGCTTCATTGTCACACAAAAAGGCTTGCAGGTGATGC
GAGACAAATTCCAACAAGCACATTTTGGTCGCTGTCCCCGTCTGGCGTGC
TGTGGTCAGCCAGTGCTCCCCCTGGGCAACTCGAACGAGGAAATCGGCGA
AACCGATCAAAACAAAGGTAAGGTGGTTGAGAAGCGACACAGGAGTGATG
GCGCTAGGGAATGCGTTAAAATCTTTTGCCCACGGTGTCGAGAAGTCTAT
TGGCCCGCGGACGCATCCCACCAGCAGCTCAACGGAGCCTACTGGGGGCC
AACGTTCGCCCATCTTTTCCTGTTGGCATTCCCGGAGCTGAACCTGGAAG
CAGCCCACTCCTGGACCCCAATACCGTCAATATTTCGGCAGGATGGAGTT
AATCGCAGGTACGACCCGGTCAGGCTCGGCCGCAAGTGTCTTGGCCGCGG
AGGCATTACGACTGACATCCAGGCTACCTCCTCTATCGACTTGGACGACG
ACCTTTGTCACTTGACGGAGAGAGAGTCATACGTACCGCGCATCTTTGGC
TTTCGCTTGGAATGTAAGCTACGCAAGCAAGACGTAACGACGCAACAAAG
AAGTGAACAGAAAGATAACTCTACGCGGCTGTGTGCAACCAGACCGTCGA
AAGGCAAATCCCTTACTGGGACAAGCTTCAAGGGAGCGGTCACGACAAAA
ATTTGTTTTTGGAAGAGCTGTGGCGTGGCACGCTTCATTCGAGGAAGATT
TTTTGTAGCGGTGTGCTTTTTTAAGAAGAGAAACGCAGAGAGTGATCAAT
AA

Synonyms

Publications