EWM27206.1, cds3496 (CDS) Nannochloropsis gaditana

Overview
NameEWM27206.1
Unique Namecds3496
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:564895..566346 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27206.1
Productcasein kinase 2 subunit beta
Orig transcript idgnl|cribi|Naga_100010g63.6176.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:564895..566346 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005956protein kinase CK2 complex
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0030234enzyme regulator activity
GO:0019887protein kinase regulator activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR016150Casein_kin_II_reg-sub_b-sht
IPR016149Casein_kin_II_reg-sub_a-hlx
IPR000704Casein_kinase_II_reg-sub
Homology
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|553196699|ref|XP_005856403.1| (casein kinase II subunit beta [Nannochloropsis gaditana CCMP526] >gi|422292658|gb|EKU19960.1| casein kinase II subunit beta [Nannochloropsis gaditana CCMP526] >gi|585109386|gb|EWM27206.1| casein kinase 2 subunit beta [Nannochloropsis gaditana])

HSP 1 Score: 1000.73 bits (2586), Expect = 0.000e+0
Identity = 483/483 (100.00%), Postives = 483/483 (100.00%), Query Frame = 0
Query:    1 MLLSQVVRFLLLSWVEGWGCRRSRSPEQFMANNKGGLVGSSHANSSSSAVSRDRNGTNGGCGETVGEAGWMSSTNVFTDGTHISHDKLIIDESSATGGRPKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGLPLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLEAAHSWTPIPSIFRQDGVNRRYDPVRLGRKCLGRGGITTDIQATSSIDLDDDLCHLTERESYVPRIFGFRLECKLRKQDVTTQQRSEQKDNSTRLCATRPSKGKSLTGTSFKGAVTTKICFWKSCGVARFIRGRFFVAVCFFKKRNAESDQ 483
            MLLSQVVRFLLLSWVEGWGCRRSRSPEQFMANNKGGLVGSSHANSSSSAVSRDRNGTNGGCGETVGEAGWMSSTNVFTDGTHISHDKLIIDESSATGGRPKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGLPLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLEAAHSWTPIPSIFRQDGVNRRYDPVRLGRKCLGRGGITTDIQATSSIDLDDDLCHLTERESYVPRIFGFRLECKLRKQDVTTQQRSEQKDNSTRLCATRPSKGKSLTGTSFKGAVTTKICFWKSCGVARFIRGRFFVAVCFFKKRNAESDQ
Sbjct:    1 MLLSQVVRFLLLSWVEGWGCRRSRSPEQFMANNKGGLVGSSHANSSSSAVSRDRNGTNGGCGETVGEAGWMSSTNVFTDGTHISHDKLIIDESSATGGRPKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGLPLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLEAAHSWTPIPSIFRQDGVNRRYDPVRLGRKCLGRGGITTDIQATSSIDLDDDLCHLTERESYVPRIFGFRLECKLRKQDVTTQQRSEQKDNSTRLCATRPSKGKSLTGTSFKGAVTTKICFWKSCGVARFIRGRFFVAVCFFKKRNAESDQ 483          
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|1179511424|ref|XP_020678241.1| (casein kinase II subunit beta-1-like [Dendrobium catenatum])

HSP 1 Score: 160.999 bits (406), Expect = 3.386e-42
Identity = 104/304 (34.21%), Postives = 148/304 (48.68%), Query Frame = 0
Query:   50 VSRDRNGTNGGCGETVGEAGWMSSTNVFTDGTHISHDKLIIDESSATGGR-------PKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGAR-ECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELN-LEAAHSWTP 340
            + RDR    GG   +  E G +    +  D  H  HDK     S    G+       P A  G    + +  + N  C D+  +   E+S +     S    DE+SWIS F    G+EFFC V   ++ +DFN  GL    P    A+DL+L+     G           E+A + +YGLIHAR+I+T KG+  M DK++   FGRCPR+ CCGQP LP+G                     +SD +R   VKI+CP+C +VY+P       ++GAY+G TF HLFL+ +P L   +A+  +TP
Sbjct:    1 MQRDRRA--GGVSGSKVEIGSLERKRI-NDVLHKQHDKSSPVISRVLNGKAKEYLNVPSASSGKQSGRFVAAVSNNKCSDEEPETVCEESDV-----SGSDIDETSWISWFCSLKGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVETSHGDMFTEEQNELVESAAEMLYGLIHARYILTNKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVG---------------------QSDISRSSAVKIYCPKCEDVYYPRSRHQGNIDGAYFGTTFPHLFLMTYPHLKPHKASQRYTP 275          
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|508776887|gb|EOY24143.1| (Casein kinase II beta chain 1 isoform 2 [Theobroma cacao])

HSP 1 Score: 159.458 bits (402), Expect = 1.199e-41
Identity = 87/223 (39.01%), Postives = 126/223 (56.50%), Query Frame = 0
Query:  123 KPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELN-LEAAHSWTP 340
            K  DD+ E  S E+ +S  + DD +SWIS F    G+EFFC V   ++ +DFN  GL    P    A+DL+L+  +  G           E+A + +YGLIH+R+I+T KG+  M DK++   FGRCPR+ CCGQP LP+G S+     T                    VKI+CPRC ++Y+P  + +Q ++GAY+G TF HLFL+ +  L  L+A+ S+ P
Sbjct:   74 KASDDESETDSEESDVSGSDGDD-TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHSRYILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSST--------------------VKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPLKASQSYVP 274          
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|590676110|ref|XP_007039641.1| (PREDICTED: casein kinase II subunit beta isoform X1 [Theobroma cacao] >gi|1204879581|ref|XP_021283108.1| casein kinase II subunit beta-1-like [Herrania umbratica] >gi|508776886|gb|EOY24142.1| Casein kinase II beta chain 1 isoform 1 [Theobroma cacao])

HSP 1 Score: 159.073 bits (401), Expect = 1.648e-41
Identity = 86/223 (38.57%), Postives = 123/223 (55.16%), Query Frame = 0
Query:  123 KPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELN-LEAAHSWTP 340
            K  DD+ E  S E+ +S  + DD +SWIS F    G+EFFC V   ++ +DFN  GL    P    A+DL+L+  +  G           E+A + +YGLIH+R+I+T KG+  M DK++   FGRCPR+ CCGQP LP+G S+     T                    VKI+CPRC ++Y+P       ++GAY+G TF HLFL+ +  L  L+A+ S+ P
Sbjct:   74 KASDDESETDSEESDVSGSDGDD-TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHSRYILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSST--------------------VKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPLKASQSYVP 275          
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|1175847981|ref|XP_020577622.1| (casein kinase II subunit beta-2-like [Phalaenopsis equestris])

HSP 1 Score: 158.303 bits (399), Expect = 3.726e-41
Identity = 92/254 (36.22%), Postives = 134/254 (52.76%), Query Frame = 0
Query:   93 SSATGGRPKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGAR-ECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLE-AAHSWTP 340
            +SA+ G+    F  A+ K+        C D+  +   E+S +     S    DE+SWIS F    G+EFFC V   ++ +DFN  GL    P    A+DL+L+  +  G           E+A + +YGLIHARF++T KG+  M DK++   FGRCPR+ CCGQP LP+G                     +SD +R   VKI+CP+C +VY+P       ++GAY+G TF HLFL+ +P L  + A+  +TP
Sbjct:   54 ASASTGKQSDHFSTAVSKNK-------CSDEEPETICEESDV-----SGSDVDETSWISWFCSLKGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHARFVLTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVG---------------------QSDISRSSAVKIYCPKCDDVYYPRSRHQGNIDGAYFGTTFPHLFLMTYPHLKPQKASQRYTP 274          
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|1109195093|ref|XP_019188278.1| (PREDICTED: putative casein kinase II subunit beta-4 [Ipomoea nil])

HSP 1 Score: 157.147 bits (396), Expect = 9.159e-41
Identity = 88/239 (36.82%), Postives = 126/239 (52.72%), Query Frame = 0
Query:  111 DLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLEAAHSWTPIPSIF 345
            D R       ++K  DD+ E  S E+ +S  + +D +SWIS F    G+EFFC V   ++ +DFN  GL    P    A+DL+L+  +  G           E+A + +YGLIH R+I+T KGL  M DK++   FGRCPR+ CCGQP LP+G S+     T                    VKI+CPRC ++Y+P       ++GAY+G TF HLFL+ +  L  +   S + IP +F
Sbjct:   62 DARSSSTLTTKNKCSDDESETDSEESDVSGSDGED-TSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDIFTEEQNELVESAAEMLYGLIHVRYILTTKGLTAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSST--------------------VKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKP-SQSYIPKVF 278          
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|1137198818|gb|OMO70104.1| (Casein kinase II, regulatory subunit [Corchorus capsularis])

HSP 1 Score: 157.147 bits (396), Expect = 1.038e-40
Identity = 85/224 (37.95%), Postives = 122/224 (54.46%), Query Frame = 0
Query:  126 DDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLEAAHSWTPIPSIF 345
            DD+ E  S E+ +S  + DD +SWIS F    G+EFFC V   ++ +DFN  GL    P    A+DL+L+  +  G           E+A + +YGLIHAR+I+T KG+  M DK++   FGRCPR+ CCGQP LP+G S+     T                    VKI+CP+C ++Y+P       ++GAY+G TF HLFL+ +  L  + A S   +P +F
Sbjct:   77 DDESETDSEESDVSGSDGDD-TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTDEQNELVESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSST--------------------VKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA-SQNYVPRVF 278          
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|567895318|ref|XP_006440147.1| (hypothetical protein CICLE_v10021529mg [Citrus clementina] >gi|557542409|gb|ESR53387.1| hypothetical protein CICLE_v10021529mg [Citrus clementina])

HSP 1 Score: 156.377 bits (394), Expect = 1.655e-40
Identity = 90/253 (35.57%), Postives = 128/253 (50.59%), Query Frame = 0
Query:   93 SSATGGRPKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLE-AAHSWTP 340
            ++  G     + G       R  R+A        D+ E  S E+ +S  E DD +SWIS F    G+EFFC V   ++ +DFN  GL    P    A+DL+L+  +  G           E+A + +YGLIHAR+I+T KG+  M DK++   FGRCPR+ CCGQP LP+G S+     T                    VKI+CPRC ++Y+P       ++GAY+G TF HLFL+ +  L  + A  S+ P
Sbjct:   42 TTINGKDMSVLLGKHPADHQRDSRSASLSKNHASDESETDSEESDVSGSEGDD-TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSST--------------------VKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAP 273          
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|823183342|ref|XP_012488815.1| (PREDICTED: casein kinase II subunit beta-like isoform X4 [Gossypium raimondii] >gi|763772658|gb|KJB39781.1| hypothetical protein B456_007G030400 [Gossypium raimondii])

HSP 1 Score: 156.377 bits (394), Expect = 1.681e-40
Identity = 86/219 (39.27%), Postives = 124/219 (56.62%), Query Frame = 0
Query:  127 DKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELN-LEAAHSWTP 340
            D+ E ++ E+ +S  + DD +SWIS F    G+EFFC V   ++ +DFN  GL    P    A+DL+L+  +  G           E+A + +YGLIHARFI+T KG+  M DK++   FGRCPR+ CCGQP LP+G S+     T                    VKIFCPRC ++Y+P  + +Q ++GAY+G TF HLFL+ +  L  L+A+  + P
Sbjct:   78 DESETNTEESDVSGSDGDD-TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDIESSHGDMFTEEQNELVESAAEMLYGLIHARFILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDFPRSST--------------------VKIFCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYSHLKPLKASQIYVP 274          
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|568846448|ref|XP_006477066.1| (PREDICTED: casein kinase II subunit beta isoform X3 [Citrus sinensis])

HSP 1 Score: 156.377 bits (394), Expect = 1.707e-40
Identity = 90/253 (35.57%), Postives = 128/253 (50.59%), Query Frame = 0
Query:   93 SSATGGRPKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLE-AAHSWTP 340
            ++  G     + G       R  R+A        D+ E  S E+ +S  E DD +SWIS F    G+EFFC V   ++ +DFN  GL    P    A+DL+L+  +  G           E+A + +YGLIHAR+I+T KG+  M DK++   FGRCPR+ CCGQP LP+G S+     T                    VKI+CPRC ++Y+P       ++GAY+G TF HLFL+ +  L  + A  S+ P
Sbjct:   42 TTINGKDMSVLLGKHPADHQRDSRSASLSKNHASDESETDSEESDVSGSEGDD-TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSST--------------------VKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAP 273          
The following BLAST results are available for this feature:
BLAST of EWM27206.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553196699|ref|XP_005856403.1|0.000e+0100.00casein kinase II subunit beta [Nannochloropsis gad... [more]
gi|1179511424|ref|XP_020678241.1|3.386e-4234.21casein kinase II subunit beta-1-like [Dendrobium c... [more]
gi|508776887|gb|EOY24143.1|1.199e-4139.01Casein kinase II beta chain 1 isoform 2 [Theobroma... [more]
gi|590676110|ref|XP_007039641.1|1.648e-4138.57PREDICTED: casein kinase II subunit beta isoform X... [more]
gi|1175847981|ref|XP_020577622.1|3.726e-4136.22casein kinase II subunit beta-2-like [Phalaenopsis... [more]
gi|1109195093|ref|XP_019188278.1|9.159e-4136.82PREDICTED: putative casein kinase II subunit beta-... [more]
gi|1137198818|gb|OMO70104.1|1.038e-4037.95Casein kinase II, regulatory subunit [Corchorus ca... [more]
gi|567895318|ref|XP_006440147.1|1.655e-4035.57hypothetical protein CICLE_v10021529mg [Citrus cle... [more]
gi|823183342|ref|XP_012488815.1|1.681e-4039.27PREDICTED: casein kinase II subunit beta-like isof... [more]
gi|568846448|ref|XP_006477066.1|1.707e-4035.57PREDICTED: casein kinase II subunit beta isoform X... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3505rna3505Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications