EWM27206.1, cds3496 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|553196699|ref|XP_005856403.1| (casein kinase II subunit beta [Nannochloropsis gaditana CCMP526] >gi|422292658|gb|EKU19960.1| casein kinase II subunit beta [Nannochloropsis gaditana CCMP526] >gi|585109386|gb|EWM27206.1| casein kinase 2 subunit beta [Nannochloropsis gaditana]) HSP 1 Score: 1000.73 bits (2586), Expect = 0.000e+0 Identity = 483/483 (100.00%), Postives = 483/483 (100.00%), Query Frame = 0
Query: 1 MLLSQVVRFLLLSWVEGWGCRRSRSPEQFMANNKGGLVGSSHANSSSSAVSRDRNGTNGGCGETVGEAGWMSSTNVFTDGTHISHDKLIIDESSATGGRPKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGLPLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLEAAHSWTPIPSIFRQDGVNRRYDPVRLGRKCLGRGGITTDIQATSSIDLDDDLCHLTERESYVPRIFGFRLECKLRKQDVTTQQRSEQKDNSTRLCATRPSKGKSLTGTSFKGAVTTKICFWKSCGVARFIRGRFFVAVCFFKKRNAESDQ 483
MLLSQVVRFLLLSWVEGWGCRRSRSPEQFMANNKGGLVGSSHANSSSSAVSRDRNGTNGGCGETVGEAGWMSSTNVFTDGTHISHDKLIIDESSATGGRPKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGLPLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLEAAHSWTPIPSIFRQDGVNRRYDPVRLGRKCLGRGGITTDIQATSSIDLDDDLCHLTERESYVPRIFGFRLECKLRKQDVTTQQRSEQKDNSTRLCATRPSKGKSLTGTSFKGAVTTKICFWKSCGVARFIRGRFFVAVCFFKKRNAESDQ
Sbjct: 1 MLLSQVVRFLLLSWVEGWGCRRSRSPEQFMANNKGGLVGSSHANSSSSAVSRDRNGTNGGCGETVGEAGWMSSTNVFTDGTHISHDKLIIDESSATGGRPKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGLPLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLEAAHSWTPIPSIFRQDGVNRRYDPVRLGRKCLGRGGITTDIQATSSIDLDDDLCHLTERESYVPRIFGFRLECKLRKQDVTTQQRSEQKDNSTRLCATRPSKGKSLTGTSFKGAVTTKICFWKSCGVARFIRGRFFVAVCFFKKRNAESDQ 483
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|1179511424|ref|XP_020678241.1| (casein kinase II subunit beta-1-like [Dendrobium catenatum]) HSP 1 Score: 160.999 bits (406), Expect = 3.386e-42 Identity = 104/304 (34.21%), Postives = 148/304 (48.68%), Query Frame = 0
Query: 50 VSRDRNGTNGGCGETVGEAGWMSSTNVFTDGTHISHDKLIIDESSATGGR-------PKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGAR-ECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELN-LEAAHSWTP 340
+ RDR GG + E G + + D H HDK S G+ P A G + + + N C D+ + E+S + S DE+SWIS F G+EFFC V ++ +DFN GL P A+DL+L+ G E+A + +YGLIHAR+I+T KG+ M DK++ FGRCPR+ CCGQP LP+G +SD +R VKI+CP+C +VY+P ++GAY+G TF HLFL+ +P L +A+ +TP
Sbjct: 1 MQRDRRA--GGVSGSKVEIGSLERKRI-NDVLHKQHDKSSPVISRVLNGKAKEYLNVPSASSGKQSGRFVAAVSNNKCSDEEPETVCEESDV-----SGSDIDETSWISWFCSLKGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVETSHGDMFTEEQNELVESAAEMLYGLIHARYILTNKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVG---------------------QSDISRSSAVKIYCPKCEDVYYPRSRHQGNIDGAYFGTTFPHLFLMTYPHLKPHKASQRYTP 275
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|508776887|gb|EOY24143.1| (Casein kinase II beta chain 1 isoform 2 [Theobroma cacao]) HSP 1 Score: 159.458 bits (402), Expect = 1.199e-41 Identity = 87/223 (39.01%), Postives = 126/223 (56.50%), Query Frame = 0
Query: 123 KPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELN-LEAAHSWTP 340
K DD+ E S E+ +S + DD +SWIS F G+EFFC V ++ +DFN GL P A+DL+L+ + G E+A + +YGLIH+R+I+T KG+ M DK++ FGRCPR+ CCGQP LP+G S+ T VKI+CPRC ++Y+P + +Q ++GAY+G TF HLFL+ + L L+A+ S+ P
Sbjct: 74 KASDDESETDSEESDVSGSDGDD-TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHSRYILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSST--------------------VKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPLKASQSYVP 274
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|590676110|ref|XP_007039641.1| (PREDICTED: casein kinase II subunit beta isoform X1 [Theobroma cacao] >gi|1204879581|ref|XP_021283108.1| casein kinase II subunit beta-1-like [Herrania umbratica] >gi|508776886|gb|EOY24142.1| Casein kinase II beta chain 1 isoform 1 [Theobroma cacao]) HSP 1 Score: 159.073 bits (401), Expect = 1.648e-41 Identity = 86/223 (38.57%), Postives = 123/223 (55.16%), Query Frame = 0
Query: 123 KPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELN-LEAAHSWTP 340
K DD+ E S E+ +S + DD +SWIS F G+EFFC V ++ +DFN GL P A+DL+L+ + G E+A + +YGLIH+R+I+T KG+ M DK++ FGRCPR+ CCGQP LP+G S+ T VKI+CPRC ++Y+P ++GAY+G TF HLFL+ + L L+A+ S+ P
Sbjct: 74 KASDDESETDSEESDVSGSDGDD-TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHSRYILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSST--------------------VKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPLKASQSYVP 275
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|1175847981|ref|XP_020577622.1| (casein kinase II subunit beta-2-like [Phalaenopsis equestris]) HSP 1 Score: 158.303 bits (399), Expect = 3.726e-41 Identity = 92/254 (36.22%), Postives = 134/254 (52.76%), Query Frame = 0
Query: 93 SSATGGRPKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGAR-ECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLE-AAHSWTP 340
+SA+ G+ F A+ K+ C D+ + E+S + S DE+SWIS F G+EFFC V ++ +DFN GL P A+DL+L+ + G E+A + +YGLIHARF++T KG+ M DK++ FGRCPR+ CCGQP LP+G +SD +R VKI+CP+C +VY+P ++GAY+G TF HLFL+ +P L + A+ +TP
Sbjct: 54 ASASTGKQSDHFSTAVSKNK-------CSDEEPETICEESDV-----SGSDVDETSWISWFCSLKGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHARFVLTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVG---------------------QSDISRSSAVKIYCPKCDDVYYPRSRHQGNIDGAYFGTTFPHLFLMTYPHLKPQKASQRYTP 274
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|1109195093|ref|XP_019188278.1| (PREDICTED: putative casein kinase II subunit beta-4 [Ipomoea nil]) HSP 1 Score: 157.147 bits (396), Expect = 9.159e-41 Identity = 88/239 (36.82%), Postives = 126/239 (52.72%), Query Frame = 0
Query: 111 DLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLEAAHSWTPIPSIF 345
D R ++K DD+ E S E+ +S + +D +SWIS F G+EFFC V ++ +DFN GL P A+DL+L+ + G E+A + +YGLIH R+I+T KGL M DK++ FGRCPR+ CCGQP LP+G S+ T VKI+CPRC ++Y+P ++GAY+G TF HLFL+ + L + S + IP +F
Sbjct: 62 DARSSSTLTTKNKCSDDESETDSEESDVSGSDGED-TSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDIFTEEQNELVESAAEMLYGLIHVRYILTTKGLTAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSST--------------------VKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKP-SQSYIPKVF 278
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|1137198818|gb|OMO70104.1| (Casein kinase II, regulatory subunit [Corchorus capsularis]) HSP 1 Score: 157.147 bits (396), Expect = 1.038e-40 Identity = 85/224 (37.95%), Postives = 122/224 (54.46%), Query Frame = 0
Query: 126 DDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLEAAHSWTPIPSIF 345
DD+ E S E+ +S + DD +SWIS F G+EFFC V ++ +DFN GL P A+DL+L+ + G E+A + +YGLIHAR+I+T KG+ M DK++ FGRCPR+ CCGQP LP+G S+ T VKI+CP+C ++Y+P ++GAY+G TF HLFL+ + L + A S +P +F
Sbjct: 77 DDESETDSEESDVSGSDGDD-TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTDEQNELVESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSST--------------------VKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA-SQNYVPRVF 278
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|567895318|ref|XP_006440147.1| (hypothetical protein CICLE_v10021529mg [Citrus clementina] >gi|557542409|gb|ESR53387.1| hypothetical protein CICLE_v10021529mg [Citrus clementina]) HSP 1 Score: 156.377 bits (394), Expect = 1.655e-40 Identity = 90/253 (35.57%), Postives = 128/253 (50.59%), Query Frame = 0
Query: 93 SSATGGRPKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLE-AAHSWTP 340
++ G + G R R+A D+ E S E+ +S E DD +SWIS F G+EFFC V ++ +DFN GL P A+DL+L+ + G E+A + +YGLIHAR+I+T KG+ M DK++ FGRCPR+ CCGQP LP+G S+ T VKI+CPRC ++Y+P ++GAY+G TF HLFL+ + L + A S+ P
Sbjct: 42 TTINGKDMSVLLGKHPADHQRDSRSASLSKNHASDESETDSEESDVSGSEGDD-TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSST--------------------VKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAP 273
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|823183342|ref|XP_012488815.1| (PREDICTED: casein kinase II subunit beta-like isoform X4 [Gossypium raimondii] >gi|763772658|gb|KJB39781.1| hypothetical protein B456_007G030400 [Gossypium raimondii]) HSP 1 Score: 156.377 bits (394), Expect = 1.681e-40 Identity = 86/219 (39.27%), Postives = 124/219 (56.62%), Query Frame = 0
Query: 127 DKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELN-LEAAHSWTP 340
D+ E ++ E+ +S + DD +SWIS F G+EFFC V ++ +DFN GL P A+DL+L+ + G E+A + +YGLIHARFI+T KG+ M DK++ FGRCPR+ CCGQP LP+G S+ T VKIFCPRC ++Y+P + +Q ++GAY+G TF HLFL+ + L L+A+ + P
Sbjct: 78 DESETNTEESDVSGSDGDD-TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDIESSHGDMFTEEQNELVESAAEMLYGLIHARFILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDFPRSST--------------------VKIFCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYSHLKPLKASQIYVP 274
BLAST of EWM27206.1 vs. NCBI_GenBank
Match: gi|568846448|ref|XP_006477066.1| (PREDICTED: casein kinase II subunit beta isoform X3 [Citrus sinensis]) HSP 1 Score: 156.377 bits (394), Expect = 1.707e-40 Identity = 90/253 (35.57%), Postives = 128/253 (50.59%), Query Frame = 0
Query: 93 SSATGGRPKAIFGAAIIKDLRCIRNAICEDKPEDDKLEDSSLEALLSSPESDDESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGL----PLDMAAVDLLLERVAKGGSTKRCRSLPRDEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNLE-AAHSWTP 340
++ G + G R R+A D+ E S E+ +S E DD +SWIS F G+EFFC V ++ +DFN GL P A+DL+L+ + G E+A + +YGLIHAR+I+T KG+ M DK++ FGRCPR+ CCGQP LP+G S+ T VKI+CPRC ++Y+P ++GAY+G TF HLFL+ + L + A S+ P
Sbjct: 42 TTINGKDMSVLLGKHPADHQRDSRSASLSKNHASDESETDSEESDVSGSEGDD-TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSST--------------------VKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAP 273 The following BLAST results are available for this feature:
BLAST of EWM27206.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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