rna350, rna350 (mRNA) Nannochloropsis gaditana

Overview
Namerna350
Unique Namerna350
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length546
Alignment locationCM002455.1:858007..859038 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g146.1759.mrna
Orig protein idgnl|cribi|Naga_100003g146.1759
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:858007..859038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g146gene337Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna350rna350-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30242.1cds350Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna350 ID=rna350|Name=rna350|organism=Nannochloropsis gaditana|type=mRNA|length=546bp
ATGAGACTTGATCTACTCTGCTGCTTCTTCGCGCCGGTCCTCCTGTCTCG
AGGCGAAGCATTCCTTGTGACACCACCCCTCGAAAAGCTGCAACATATAT
GCTCCACTGCTAGTGCTATACTGGGTTCTACTACTCACCCAATGGCCAAT
AGGAAGATCCAGTTCTCCGACAATGAAGACAACACGGATCGCGTGACACA
AGTTGAATTGCGTGGGGATGGAAGCGTCAGCTTTATCTCCGATAGCACCA
ACGCTGTAGACGTGCAGGGTAGCTGGCGTCCTGGTGATGAAGGAAAAGTC
GGCTTTCTATTGGAGCGCTTTTACTCCGATAGCGGAGACAGCAAGTATAG
CATGACAAGGATTTATGAAGGTACGATTACGATCTCGGGCACCTCTATTC
GCGGTGAAGGTAGGATTGAGATGGAAAAATACAATGATCTCTTCACGTGT
GGCTTCTTTTCCTTGATAAGTGTTGACGACGACCCGGACGATTTTTTTGA
GAAGCTAAAACCTGGCCACACAGTGATGCAAGGGATTGATCAGTGA
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protein sequence of rna350

>rna350-protein ID=rna350-protein|Name=rna350|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MLSSAAFRSPSGMWGLQMCAPEALCVCRRMNRRRETHGPCQRSRGTPECI
RDLLPGKAQLTMGSIKLQEMKGRDRKWRTTAHYAIRQLVLHLESSVIRSQ
LLFAPRGRRNPCGISRKARRSLGKEVLAHFVRWFQDLANREDSRIKPCMV
VDPVLPGSKAIEGVRKGHNFRKGNAPLSEEYRTAARGNTGCWS
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mRNA from alignment at CM002455.1:858007..859038+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna350 ID=rna350|Name=rna350|organism=Nannochloropsis gaditana|type=mRNA|length=1032bp|location=Sequence derived from alignment at CM002455.1:858007..859038+ (Nannochloropsis gaditana)
ATGCTTTCAAGTGCCGCATTCCGCAGTCCCTCAGGGATGTGGGGGCTGCA
AATGTGTGCGCCTGAAGCACTTTGTGTTTGTCGAAGAATGAATAGAAGAC
GCGAAACGTGACTGTTATCCATCGAGTTTTTATTACTTTGTATACTATAA
ACTACTATATGTGAGAACGTCTTTTCCAAAATCTACGACCGATAAAGTCA
TTAAATTTAATGCTATAATATTACGCGTCCTTATACAACTTTAGGCTGGC
GCTGCTGTCATAGGGTTGTTACGAGGCTCAAGAAATTGTTTTTGGTGAAC
AAAGGCGTAGTTTTTGCATGTAGCCTTTCCACACGTTGCTCCAAATACCG
TCTGTCGACGAGAGATGGAGCCGGGCAATTTCAGGGAGGCCCCACACGAT
GCCCAGGGCCATTCCGCACAAGGCAGAACCGGTATATTTTGCTCCCCTCA
ACGTAGATACACAGAAATACTAGGAGTGAGTGTCATGCTCAAAAATTAGC
GAATCGATGCGGAGAGAGAGATCTTTGACATATCCAACGCAAGTTCACCC
AGCATAGACACGGGCCCTGTCAGCGAAGTCGTGGGACACCGGAATGCATC
CGAGATCTCCTTCCCGGCAAAGCACAGCTCACTATGGGAAGCATCAAGCT
GCAAGAAATGAAAGGGCGGGACCGAAAGTGGCGCACGACCGCGCATTATG
CCATTCGACAGCTTGTTTTACATCTTGAATCGTCTGTCATCAGAAGCCAA
CTTCTCTTTGCACCTCGCGGACGGCGCAATCCATGTGGGATTTCCCGAAA
AGCAAGGCGATCACTAGGGAAAGAAGTTCTAGCGCATTTTGTCCGTTGGT
TTCAAGATTTGGCGAATAGAGAGGATTCCCGCATCAAGCCCTGCATGGTG
GTGGACCCCGTACTACCAGGTTCGAAAGCCATCGAAGGCGTGAGAAAAGG
GCACAATTTCCGCAAGGGAAACGCCCCTCTCTCGGAGGAGTATCGCACGG
CTGCTCGAGGTAACACAGGATGCTGGTCGTAA
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Coding sequence (CDS) from alignment at CM002455.1:858007..859038+

>rna350 ID=rna350|Name=rna350|organism=Nannochloropsis gaditana|type=CDS|length=1164bp|location=Sequence derived from alignment at CM002455.1:858007..859038+ (Nannochloropsis gaditana)
ATGCTTTCAAGTGCCGCATTCCGCAGTCCCTCAGGGATGTGGGGGCTGCA
AATGTGTGCGCCTGAAGCACTTTGTGTTTGTCGAAGAATGAATAGAAGAC
GCGAAACACACGGGCCCTGTCAGCGAAGTCGTGGGACACCGGAATGCATC
CGAGATCTCCTTCCCGGCAAAGCACAGCTCACTATGGGAAGCATCAAGCT
GCAAGAAATGAAAGGGCGGGACCGAAAGTGGCGCACGACCGCGCATTATG
CCATTCGACAGCTTGTTTTACATCTTGAATCGTCTGTCATCAGAAGCCAA
CTTCTCTTTGCACCTCGCGGACGGCGCAATCCATGTGGGATTTCCCGAAA
AGCAAGGCGATCACTAGGGAAAGAAGTTCTAGCGCATTTTGTCCGTTGGT
TTCAAGATTTGGCGAATAGAGAGGATTCCCGCATCAAGCCCTGCATGGTG
GTGGACCCCGTACTACCAGGTTCGAAAGCCATCGAAGGCGTGAGAAAAGG
GCACAATTTCCGCAAGGGAAACGCCCCTCTCTCGGAGGAGTATCGCACGG
CTGCTCGAGGTAACACAGGATGCTGGTCGTAAATGCTTTCAAGTGCCGCA
TTCCGCAGTCCCTCAGGGATGTGGGGGCTGCAAATGTGTGCGCCTGAAGC
ACTTTGTGTTTGTCGAAGAATGAATAGAAGACGCGAAACACACGGGCCCT
GTCAGCGAAGTCGTGGGACACCGGAATGCATCCGAGATCTCCTTCCCGGC
AAAGCACAGCTCACTATGGGAAGCATCAAGCTGCAAGAAATGAAAGGGCG
GGACCGAAAGTGGCGCACGACCGCGCATTATGCCATTCGACAGCTTGTTT
TACATCTTGAATCGTCTGTCATCAGAAGCCAACTTCTCTTTGCACCTCGC
GGACGGCGCAATCCATGTGGGATTTCCCGAAAAGCAAGGCGATCACTAGG
GAAAGAAGTTCTAGCGCATTTTGTCCGTTGGTTTCAAGATTTGGCGAATA
GAGAGGATTCCCGCATCAAGCCCTGCATGGTGGTGGACCCCGTACTACCA
GGTTCGAAAGCCATCGAAGGCGTGAGAAAAGGGCACAATTTCCGCAAGGG
AAACGCCCCTCTCTCGGAGGAGTATCGCACGGCTGCTCGAGGTAACACAG
GATGCTGGTCGTAA
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Synonyms
Publications