EWM30242.1, cds350 (CDS) Nannochloropsis gaditana

Overview
NameEWM30242.1
Unique Namecds350
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:858007..858113 +
Alignment locationCM002455.1:858564..859038 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30242.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g146.1759.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:858007..858113 +
CM002455.1supercontigCM002455.1:858564..859038 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM30242.1 vs. NCBI_GenBank
Match: gi|585112901|gb|EWM30242.1| (hypothetical protein Naga_100003g146 [Nannochloropsis gaditana])

HSP 1 Score: 397.512 bits (1020), Expect = 3.820e-140
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 
Query:    1 MLSSAAFRSPSGMWGLQMCAPEALCVCRRMNRRRETHGPCQRSRGTPECIRDLLPGKAQLTMGSIKLQEMKGRDRKWRTTAHYAIRQLVLHLESSVIRSQLLFAPRGRRNPCGISRKARRSLGKEVLAHFVRWFQDLANREDSRIKPCMVVDPVLPGSKAIEGVRKGHNFRKGNAPLSEEYRTAARGNTGCWS 193
            MLSSAAFRSPSGMWGLQMCAPEALCVCRRMNRRRETHGPCQRSRGTPECIRDLLPGKAQLTMGSIKLQEMKGRDRKWRTTAHYAIRQLVLHLESSVIRSQLLFAPRGRRNPCGISRKARRSLGKEVLAHFVRWFQDLANREDSRIKPCMVVDPVLPGSKAIEGVRKGHNFRKGNAPLSEEYRTAARGNTGCWS
Sbjct:    1 MLSSAAFRSPSGMWGLQMCAPEALCVCRRMNRRRETHGPCQRSRGTPECIRDLLPGKAQLTMGSIKLQEMKGRDRKWRTTAHYAIRQLVLHLESSVIRSQLLFAPRGRRNPCGISRKARRSLGKEVLAHFVRWFQDLANREDSRIKPCMVVDPVLPGSKAIEGVRKGHNFRKGNAPLSEEYRTAARGNTGCWS 193
The following BLAST results are available for this feature:
BLAST of EWM30242.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585112901|gb|EWM30242.1|3.820e-140100.00hypothetical protein Naga_100003g146 [Nannochlorop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna350rna350Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications