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Properties
| Property Name | Value |
|---|
| Product | always early protein 3 |
| Orig transcript id | gnl|cribi|Naga_100010g53.6126.mrna |
| Orig protein id | gnl|cribi|Naga_100010g53.6126 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:548528..551376 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3498 ID=rna3498|Name=rna3498|organism=Nannochloropsis gaditana|type=mRNA|length=1754bp
GAGTAGACAGACGGAAATGCAGGAAGATACAAGCGCAGAGCTCATGACTT
TACCGAACGACAAAGTTTTTTTTCAGTCCTGCAGAACGTATTCCGGATAA
GTGCAGATTAGAAGGATCTTTACGACCAGTGAGAAATACAGCGGCCAACA
TCGATACCAAGCAAATCTTGTACTCAAGCCTGAACTAACCTCCCGACCCC
CAGCATCGATGCATCTGGCTCATCGCTCATGCGCCGTGGCTACGTACACG
CTCGCACCATAATGCCGACCTGATATTACTTTCTGCATGCAAGGCCCTCT
TAAATATACATTCTGCGTGCGCATTCGCTGACAGATTCAACTCTTAGCAC
CAGCGAGCAGGTTGGGCATCCTCTTAGTTTTGGGGGCCTCAAGCGCTAGA
GGAGAAACCCGCCTTATTCCCTACCGTCGTGGGATGGGGGTTGGCCACTT
TAGAAGGCTTTTACTTGTTGTAAAACATACGCCTTATGAAATGTATTTGC
AAATGAAGTCTCAAGGCAAGGCACCGCTGGCATTACGATGGGAGCGCTTA
AAGCATCGTCATCAAGTCCATAAGGAATGTGTCCAGGATTTGAGCGATCT
GCTGCGCCGCATGGATATGGACTTCTCTATGGTTGGACGAGAAGAATTGG
ACCGACAGCACCTGAAAAACGTTGACTTGGTGGTTGCGGTTGGTGGGGAT
GGTACAGTACTATCTTGCTCTCATTTTTTGGATGATACAATCCCCCTACT
TGGCGTAAACAGCGACCCTTCCCGGGACGACGAGAAAAAGGTCAATAAAA
AGCTCGATGAACGTCGAAGCTTTGGAGCCCTTTGCGCATGTACAGCGTCT
AATATGTTTGAGGTCATTCCTGACATACTTCATGGGCAGAATCAAGCGGG
CAGGCGGACACGCATACAAACCGTTGTGCGCGATGCTTTGAAAGAGACTA
AGCTACCTCCGGCCTTAAACGATATTCTCGTTGCTCATCCTATTCCTGCC
GCCGTTTCTCGTTTTCGCTTAGGATTCTTGAACAGTGCAGGAGATGAAAC
GTCCCATTTTAATGTATGGTCCAGCGGTCTTTGGATCTCGACTGCTACCG
GCTCCTCTGCAGCCATGACAGCAGCCGGTGGCGTGCTTATGGACCTGAAA
TCAAGCGAGTTGCAATATATGGTCCGTGAACACTTACTTGAGGCCGGTGG
AGAGCATCTAGAAAAGGAAGGTCATGGTATGCTCCAGCCAGGCAATACTT
TGCAAATGCGCTGGAATTCTCAGCATGGCTGCGTTTATGTTGATGGCAGC
CATGTGCGTCATAATTTACAATTGGGAGATACTGTTAGTTTGTCGGCGGA
TGCGCCTCCAATTTGGCTTTTTGAGAAGCCTGAAGGTATATCCGGACCGA
CACAGTGAAGAACTGAGAGCCTGTGGGGAGCTTGTTTTTGCGAAAGGAAT
TAAGGTTCTGACGAGATGTACGCTCATACACGGAAAGTCTCAATTTCCTC
CGCATACTTTATAAATTATCTTCAATCCAACCATGTGCTCCACAAATTTA
AAGGTGCTAATTACATTGTACCTTCAAAATCTCATACAAAGCATCTTTGC
ATGGAGTTTTTTTTAACAAAAATTTTCCAAATGACTGAGAGGGTTCCGTG
ATGCTGCGAATTGAATTTTTTGCCCTCCGAAATAAACGAGAGAAATCGCA
CAGAATTTTAGCTTTTCTGATAGAGGTTTTGAACTCAAGTAGAATGTCTC
TTCA back to topprotein sequence of rna3498 >rna3498-protein ID=rna3498-protein|Name=rna3498|organism=Nannochloropsis gaditana|type=polypeptide|length=577bp
MELSDSSNPSPYISENFYRQMLVSFKKGHRRIPTSDHRPRSLAQSLSTSV
RRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFF
GRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPLYLTVGS
NVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTELSIQG
IPSFTHNTSSDPSDGIFPTQAGNKHFFQACTTTKGSSFGQSGFDNISWAS
FSKSIDFSSPADQGKVEVVQLMIFTLRMLHRKEILLEILETFDRQVRKSL
ESKSPRNSLPMNTRKSYGSSGANYGLRDRNKLFHPKSTDSISALRNDILW
NDSSLLIQEYHWIFHAFRRSNVAFKSAFGRLLIHGKSRYISSGQIVPRSW
NAELGKKKRPNNFADDVVRGAWKESISAISHHIQTVSYDETIEEIPRISS
SRDIGKRKVLSGQDHVLLKSAVAMLFVLKECADKQFSQMQSYDRDKVMSF
VALEMERTLLALLLKVQRGVLTIPRLLHKKRGMDQYDTEKEEEEKIGTSL
EALELAKAALSGKIASAVIALQHAMAG back to topmRNA from alignment at CM002461.1:548528..551376- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3498 ID=rna3498|Name=rna3498|organism=Nannochloropsis gaditana|type=mRNA|length=2849bp|location=Sequence derived from alignment at CM002461.1:548528..551376- (Nannochloropsis gaditana)
CGCCGATGAACTTTGAGGCTTTGCGTCAATCACAACAAATGGCTTGAAGC
TTAGTAATCACACCTGTCAGAAGTCCATGTTTTAGGGGCATCCCGAATAT
TATGTGTTCAGAGAGATATGACGCGGCTATCCACGCCGGCAGTTTTTTCA
TTCCCTGCCATGACAGAGAGGTAATATTGCAGTAGAAACGGAGATAATTG
CTACACAGTATGTGAGCTTTTTTAAGCGCTCGGTCGAAGATGGAATGGAT
ACAAGCCAAGAGTGATCAGCCTCATGCGAACGATACATTTCTTTCACCTC
CCAGATACGAACAATAATTAGAAAAGAAGTCGTGACTGCAGGGAGGCGAC
TATCGAAAAATGAGTGGAGATATCAGGGTACTTTATGTGCCAGCAAAGCC
ATGAAAATGAAATCTTGGCCTCATAACAGTATATCTCATGCAGGATTCTG
ATTTCTAACCACATAATGTAGCATTTTGACGAATTTATCGACCGGAGATG
GAGCTGTCAGACAGCAGCAATCCCTCCCCTTACATATCAGAAAACTTCTA
TAGACAAATGCTAGTATCCTTCAAGAAAGGTCACAGGCGTATCCCGACAA
GTGATCACCGCCCGAGGTCACTGGCGCAATCGCTATCCACATCTGTGCGC
CGCTTTGCTGTAACTGAATTTTTTTATGCAACCGTGGACAGAGGCTATTT
GAATAGCAATTGCTTTGGCAAAAGGTTGGATGAGCTTGGTCTAAGACACA
TCCGGAAGATTTCCCGGACGGAGTGGGATATTGTTCGGTTATTCTTTGGC
CGGCGTCGACGTTTGAGCCCACTTTTCCTCCGCCAAGAGCGGCAAAAGCT
GCATAAATTCAGACGCATGGCTCGAATCTCTCAACGGCAGTCGGTAAATC
ATTTTGGTCAGTAATCCTAGCGATATCCATGTGTCTTTAAGGTACACTTC
TTGTGACTTTTGAGACTCGTAGCGCTAAATCATGGACCTCATTCTATTTC
TGATTCTCTTATGTTGTAGATCTCGAGAACCAAATGCCTCTATATTTGAC
AGTGGGGAGTAATGTACAAGCTTACGACATCAAAAGAAACTTTCTTGGAC
GCGGCAAGATTTTGACTGCCAATTATGATATAAGTCGTTACCGAATCCAG
TTCGAGGATCCAAGTCTTGGTACCATTTTGTGCGCGGACACAGAACTTTC
CATACAAGGGATTCCATCATTCACGCACAACACTTCGTCGGACCCAAGCG
ATGGGATTTTTCCTACTCAGGCTGGAAACAAACATTTTTTTCAAGCATGC
ACAACAACAAAGGGCTCGTCCTTTGGGCAAAGTGGTTTCGACAACATCTC
ATGGGCATCCTTTTCAAAATCAATCGATTTTTCGTCTCCCGCCGACCAAG
GAAAAGTAGAAGTTGTGCAGCTTATGATTTTCACTCTACGGATGTTACAT
CGCAAAGAGATTTTACTCGAAATTCTGGAAACATTCGATCGGCAAGTGAG
GAAGTCATTAGAATCCAAGTCACCAAGGAACTCACTTCCTATGAACACTC
GAAAATCTTACGGATCTTCAGGCGCAAATTATGGCCTTAGGGATCGCAAT
AAATTGTTTCATCCTAAATCAACAGACTCAATTTCAGCGCTTCGAAACGA
TATTTTATGGAACGATTCGTCGTTATTGATTCAAGAATATCACTGGATAT
TCCATGCTTTTCGACGCTCGAATGTGGCTTTTAAGTCAGCTTTTGGTCGC
TTACTTATACATGGGAAAAGTAGATATATTTCATCGGGACAAATCGTGCC
AAGGAGCTGGAATGCAGAGCTAGGTAAGAAGAAACGTCCGAATAATTTTG
CCGATGATGTGGTTCGCGGTGCGTGGAAGGAGTCTATATCAGCTATCAGT
CATCACATTCAAACGGTGTCGTATGACGAAACAATCGAGGAGATACCTAG
AATTTCATCGTCCAGGGATATCGGGAAAAGAAAAGTTTTGTCAGGCCAAG
ACCACGTACTTCTAAAGTCAGCGGTTGCAATGTTGTTTGTTTTGAAGGAG
TGCGCAGATAAACAGTTCTCTCAAATGCAATCGTACGATAGGGATAAAGT
GATGAGCTTCGTAGCTCTTGAAATGGAGCGAACTCTTCTTGCCCTTCTTT
TAAAAGTACAACGTGGAGTTCTGACGATCCCGAGACTTCTACATAAAAAA
CGAGGCATGGATCAATATGATACCGAGAAAGAGGAGGAGGAAAAGATAGG
AACGTCACTAGAAGCACTTGAGCTTGCAAAAGCAGCCTTGAGTGGAAAAA
TTGCGAGCGCCGTCATTGCCCTTCAGCATGCAATGGCGGGCTGACAAGAA
TCCTGTGGTCGGAAACTTGCGAAATATCTAGTACTCTATGAGGTCGTCTG
TACCCACACAAATATGTGAGTAAATGCTCAAGCCTACTGTGACGAAAGGT
GTGTTTAAAGTCCTGTATGCGCAAAGGATACGATCCTCAACGAGGTGCTA
TGAAGAGACATTCTACTTGAGTTCAAAACCTCTATCAGAAAAGCTAAAAT
TCTGTGCGATTTCTCTCGTTTATTTCGGAGGGCAAAAAATTCAATTCGCA
GCATCACGGAACCCTCTCAGTCATTTGGAAAATTTTTGTTAAAAAAAACT
CCATGCAAAGATGCTTTGTATGAGATTTTGAAGGTACAATGTAATTAGCA
CCTTTAAATTTGTGGAGCACATGGTTGGATTGAAGATAATTTATAAAGTA
TGCGGAGGAAATTGAGACTTTCCGTGTATGAGCGTACATCTCGTCAGAAC
CTTAATTCCTTTCGCAAAAACAAGCTCCCCACAGGCTCTCAGTTCTTCA back to topCoding sequence (CDS) from alignment at CM002461.1:548528..551376- >rna3498 ID=rna3498|Name=rna3498|organism=Nannochloropsis gaditana|type=CDS|length=3468bp|location=Sequence derived from alignment at CM002461.1:548528..551376- (Nannochloropsis gaditana)
ATCTCGAGAACCAAATGCCTCTATATTTGACAGTGGGGAGTAATGTACAA
GCTTACGACATCAAAAGAAACTTTCTTGGACGCGGCAAGATTTTGACTGC
CAATTATGATATAAGTCGTTACCGAATCCAGTTCGAGGATCCAAGTCTTG
GTACCATTTTGTGCGCGGACACAGAACTTTCCATACAAGGGATTCCATCA
TTCACGCACAACACTTCGTCGGACCCAAGCGATGGGATTTTTCCTACTCA
GGCTGGAAACAAACATTTTTTTCAAGCATGCACAACAACAAAGGGCTCGT
CCTTTGGGCAAAGTGGTTTCGACAACATCTCATGGGCATCCTTTTCAAAA
TCAATCGATTTTTCGTCTCCCGCCGACCAAGGAAAAGTAGAAGTTGTGCA
GCTTATGATTTTCACTCTACGGATGTTACATCGCAAAGAGATTTTACTCG
AAATTCTGGAAACATTCGATCGGCAAGTGAGGAAGTCATTAGAATCCAAG
TCACCAAGGAACTCACTTCCTATGAACACTCGAAAATCTTACGGATCTTC
AGGCGCAAATTATGGCCTTAGGGATCGCAATAAATTGTTTCATCCTAAAT
CAACAGACTCAATTTCAGCGCTTCGAAACGATATTTTATGGAACGATTCG
TCGTTATTGATTCAAGAATATCACTGGATATTCCATGCTTTTCGACGCTC
GAATGTGGCTTTTAAGTCAGCTTTTGGTCGCTTACTTATACATGGGAAAA
GTAGATATATTTCATCGGGACAAATCGTGCCAAGGAGCTGGAATGCAGAG
CTAGGTAAGAAGAAACGTCCGAATAATTTTGCCGATGATGTGGTTCGCGG
TGCGTGGAAGGAGTCTATATCAGCTATCAGTCATCACATTCAAACGGTGT
CGTATGACGAAACAATCGAGGAGATACCTAGAATTTCATCGTCCAGGGAT
ATCGGGAAAAGAAAAGTTTTGTCAGGCCAAGACCACGTACTTCTAAAGTC
AGCGGTTGCAATGTTGTTTGTTTTGAAGGAGTGCGCAGATAAACAGTTCT
CTCAAATGCAATCGTACGATAGGGATAAAGTGATGAGCTTCGTAGCTCTT
GAAATGGAGCGAACTCTTCTTGCCCTTCTTTTAAAAGTACAACGTGGAGT
TCTGACGATCCCGAGACTTCTACATAAAAAACGAGGCATGGATCAATATG
ATACCGAGAAAGAGGAGGAGGAAAAGATAGGAACGTCACTAGAAGCACTT
GAGCTTGCAAAAGCAGCCTTGAGTGGAAAAATTGCGAGCGCCGTCATTGC
CCTTCAGCATGCAATGGCGGGCTGAATGGAGCTGTCAGACAGCAGCAATC
CCTCCCCTTACATATCAGAAAACTTCTATAGACAAATGCTAGTATCCTTC
AAGAAAGGTCACAGGCGTATCCCGACAAGTGATCACCGCCCGAGGTCACT
GGCGCAATCGCTATCCACATCTGTGCGCCGCTTTGCTGTAACTGAATTTT
TTTATGCAACCGTGGACAGAGGCTATTTGAATAGCAATTGCTTTGGCAAA
AGGTTGGATGAGCTTGGTCTAAGACACATCCGGAAGATTTCCCGGACGGA
GTGGGATATTGTTCGGTTATTCTTTGGCCGGCGTCGACGTTTGAGCCCAC
TTTTCCTCCGCCAAGAGCGGCAAAAGCTGCATAAATTCAGACGCATGGCT
CGAATCTCTCAACGGCAGTCGGTAAATCATTTTGATCTCGAGAACCAAAT
GCCTCTATATTTGACAGTGGGGAGTAATGTACAAGCTTACGACATCAAAA
GAAACTTTCTTGGACGCGGCAAGATTTTGACTGCCAATTATGATATAAGT
CGTTACCGAATCCAGTTCGAGGATCCAAGTCTTGGTACCATTTTGTGCGC
GGACACAGAACTTTCCATACAAGGGATTCCATCATTCACGCACAACACTT
CGTCGGACCCAAGCGATGGGATTTTTCCTACTCAGGCTGGAAACAAACAT
TTTTTTCAAGCATGCACAACAACAAAGGGCTCGTCCTTTGGGCAAAGTGG
TTTCGACAACATCTCATGGGCATCCTTTTCAAAATCAATCGATTTTTCGT
CTCCCGCCGACCAAGGAAAAGTAGAAGTTGTGCAGCTTATGATTTTCACT
CTACGGATGTTACATCGCAAAGAGATTTTACTCGAAATTCTGGAAACATT
CGATCGGCAAGTGAGGAAGTCATTAGAATCCAAGTCACCAAGGAACTCAC
TTCCTATGAACACTCGAAAATCTTACGGATCTTCAGGCGCAAATTATGGC
CTTAGGGATCGCAATAAATTGTTTCATCCTAAATCAACAGACTCAATTTC
AGCGCTTCGAAACGATATTTTATGGAACGATTCGTCGTTATTGATTCAAG
AATATCACTGGATATTCCATGCTTTTCGACGCTCGAATGTGGCTTTTAAG
TCAGCTTTTGGTCGCTTACTTATACATGGGAAAAGTAGATATATTTCATC
GGGACAAATCGTGCCAAGGAGCTGGAATGCAGAGCTAGGTAAGAAGAAAC
GTCCGAATAATTTTGCCGATGATGTGGTTCGCGGTGCGTGGAAGGAGTCT
ATATCAGCTATCAGTCATCACATTCAAACGGTGTCGTATGACGAAACAAT
CGAGGAGATACCTAGAATTTCATCGTCCAGGGATATCGGGAAAAGAAAAG
TTTTGTCAGGCCAAGACCACGTACTTCTAAAGTCAGCGGTTGCAATGTTG
TTTGTTTTGAAGGAGTGCGCAGATAAACAGTTCTCTCAAATGCAATCGTA
CGATAGGGATAAAGTGATGAGCTTCGTAGCTCTTGAAATGGAGCGAACTC
TTCTTGCCCTTCTTTTAAAAGTACAACGTGGAGTTCTGACGATCCCGAGA
CTTCTACATAAAAAACGAGGCATGGATCAATATGATACCGAGAAAGAGGA
GGAGGAAAAGATAGGAACGTCACTAGAAGCACTTGAGCTTGCAAAAGCAG
CCTTGAGTGGAAAAATTGCGAGCGCCGTCATTGCCCTTCAGCATGCAATG
GCGGGCTGAATGGAGCTGTCAGACAGCAGCAATCCCTCCCCTTACATATC
AGAAAACTTCTATAGACAAATGCTAGTATCCTTCAAGAAAGGTCACAGGC
GTATCCCGACAAGTGATCACCGCCCGAGGTCACTGGCGCAATCGCTATCC
ACATCTGTGCGCCGCTTTGCTGTAACTGAATTTTTTTATGCAACCGTGGA
CAGAGGCTATTTGAATAGCAATTGCTTTGGCAAAAGGTTGGATGAGCTTG
GTCTAAGACACATCCGGAAGATTTCCCGGACGGAGTGGGATATTGTTCGG
TTATTCTTTGGCCGGCGTCGACGTTTGAGCCCACTTTTCCTCCGCCAAGA
GCGGCAAAAGCTGCATAAATTCAGACGCATGGCTCGAATCTCTCAACGGC
AGTCGGTAAATCATTTTG back to top
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