EWM27156.1, cds3489 (CDS) Nannochloropsis gaditana

Overview
NameEWM27156.1
Unique Namecds3489
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:550471..550879 -
Alignment locationCM002461.1:549033..550357 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27156.1
Productalways early protein 3
Orig transcript idgnl|cribi|Naga_100010g53.6126.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:550471..550879 -
CM002461.1supercontigCM002461.1:549033..550357 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0007049cell cycle
GO:0006351transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
GO:0017053transcriptional repressor complex
Vocabulary: INTERPRO
TermDefinition
IPR010561LIN-9/ALY1
Homology
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|585109336|gb|EWM27156.1| (always early protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 1192.95 bits (3085), Expect = 0.000e+0
Identity = 577/577 (100.00%), Postives = 577/577 (100.00%), Query Frame = 0
Query:    1 MELSDSSNPSPYISENFYRQMLVSFKKGHRRIPTSDHRPRSLAQSLSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTELSIQGIPSFTHNTSSDPSDGIFPTQAGNKHFFQACTTTKGSSFGQSGFDNISWASFSKSIDFSSPADQGKVEVVQLMIFTLRMLHRKEILLEILETFDRQVRKSLESKSPRNSLPMNTRKSYGSSGANYGLRDRNKLFHPKSTDSISALRNDILWNDSSLLIQEYHWIFHAFRRSNVAFKSAFGRLLIHGKSRYISSGQIVPRSWNAELGKKKRPNNFADDVVRGAWKESISAISHHIQTVSYDETIEEIPRISSSRDIGKRKVLSGQDHVLLKSAVAMLFVLKECADKQFSQMQSYDRDKVMSFVALEMERTLLALLLKVQRGVLTIPRLLHKKRGMDQYDTEKEEEEKIGTSLEALELAKAALSGKIASAVIALQHAMAG 577
            MELSDSSNPSPYISENFYRQMLVSFKKGHRRIPTSDHRPRSLAQSLSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTELSIQGIPSFTHNTSSDPSDGIFPTQAGNKHFFQACTTTKGSSFGQSGFDNISWASFSKSIDFSSPADQGKVEVVQLMIFTLRMLHRKEILLEILETFDRQVRKSLESKSPRNSLPMNTRKSYGSSGANYGLRDRNKLFHPKSTDSISALRNDILWNDSSLLIQEYHWIFHAFRRSNVAFKSAFGRLLIHGKSRYISSGQIVPRSWNAELGKKKRPNNFADDVVRGAWKESISAISHHIQTVSYDETIEEIPRISSSRDIGKRKVLSGQDHVLLKSAVAMLFVLKECADKQFSQMQSYDRDKVMSFVALEMERTLLALLLKVQRGVLTIPRLLHKKRGMDQYDTEKEEEEKIGTSLEALELAKAALSGKIASAVIALQHAMAG
Sbjct:    1 MELSDSSNPSPYISENFYRQMLVSFKKGHRRIPTSDHRPRSLAQSLSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTELSIQGIPSFTHNTSSDPSDGIFPTQAGNKHFFQACTTTKGSSFGQSGFDNISWASFSKSIDFSSPADQGKVEVVQLMIFTLRMLHRKEILLEILETFDRQVRKSLESKSPRNSLPMNTRKSYGSSGANYGLRDRNKLFHPKSTDSISALRNDILWNDSSLLIQEYHWIFHAFRRSNVAFKSAFGRLLIHGKSRYISSGQIVPRSWNAELGKKKRPNNFADDVVRGAWKESISAISHHIQTVSYDETIEEIPRISSSRDIGKRKVLSGQDHVLLKSAVAMLFVLKECADKQFSQMQSYDRDKVMSFVALEMERTLLALLLKVQRGVLTIPRLLHKKRGMDQYDTEKEEEEKIGTSLEALELAKAALSGKIASAVIALQHAMAG 577          
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1028966700|ref|XP_016726874.1| (PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Gossypium hirsutum])

HSP 1 Score: 95.1301 bits (235), Expect = 1.224e-16
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 0
Query:   46 LSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPL----YLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196
             S   RR+   E+FY+T+D  +     F + LD +GL HI +++R EW ++R   G+ RR S  FL++ER+KL+++R   R  +  +  H  +   +P      L+VG  V A   K   +  G +LT +Y  SRYRIQF+ P LG     D + 
Sbjct:  621 CSYQARRWCAFEWFYSTIDYPWFTKREFVEYLDHVGLGHIPRLTRVEWGVIRSSLGKPRRFSEQFLKEEREKLNQYRESVR--RHYAELHAGIGEGLPTDLARPLSVGQRVIAVHPKTREIHDGSVLTVDY--SRYRIQFDSPELGVEFVMDVDC 771          
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1028966698|ref|XP_016726873.1| (PREDICTED: protein ALWAYS EARLY 3 isoform X1 [Gossypium hirsutum])

HSP 1 Score: 95.1301 bits (235), Expect = 1.269e-16
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 0
Query:   46 LSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPL----YLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196
             S   RR+   E+FY+T+D  +     F + LD +GL HI +++R EW ++R   G+ RR S  FL++ER+KL+++R   R  +  +  H  +   +P      L+VG  V A   K   +  G +LT +Y  SRYRIQF+ P LG     D + 
Sbjct:  623 CSYQARRWCAFEWFYSTIDYPWFTKREFVEYLDHVGLGHIPRLTRVEWGVIRSSLGKPRRFSEQFLKEEREKLNQYRESVR--RHYAELHAGIGEGLPTDLARPLSVGQRVIAVHPKTREIHDGSVLTVDY--SRYRIQFDSPELGVEFVMDVDC 773          
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|168011027|ref|XP_001758205.1| (predicted protein [Physcomitrella patens] >gi|162690661|gb|EDQ77027.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 94.3597 bits (233), Expect = 2.135e-16
Identity = 57/161 (35.40%), Postives = 83/161 (51.55%), Query Frame = 0
Query:   46 LSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHF--DLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTELSIQGIPSF 204
            L   VRR+ + E+FY+ +D  +   N F + L+  GL H+ +++R EW ++R   G+ RRLS  FL++ER+KL  +R   R    +  N     L   +   LTVG  V A   K   +  G ILT   D SR R+QF+ P LG  L  D    I  +P +
Sbjct:  698 LCPKVRRWCMCEWFYSAIDLPWFARNEFVEYLNHAGLGHVPRLTRVEWGVIRGSLGKPRRLSKRFLQEEREKLETYRESVRTHYHELRNGLREGLPADLARPLTVGQKVIARHPKTREIHDGSILT--VDRSRCRVQFDRPELGVELVMD----IDAMPMY 852          
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1137236636|gb|OMO98453.1| (hypothetical protein COLO4_13902 [Corchorus olitorius])

HSP 1 Score: 93.9745 bits (232), Expect = 2.465e-16
Identity = 60/182 (32.97%), Postives = 93/182 (51.10%), Query Frame = 0
Query:   24 SFKKGHRRIPTS--DHRPRSLAQSLST-----SVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARI--SQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196
            S  KG   +P +    R  +L + LS        RR+ V E+FY+T+D  +     F + LD +GL H+ +++R EW ++R   G+ RR S  FL++ER+KLH++R   R   ++ ++     L   +   L+VG  V A   K   +  G +L    D SRYRIQF+ P LG     D + 
Sbjct:  598 SIVKGKSSVPVALFHDRAHNLKEKLSNFLSSYQARRWCVFEWFYSTIDYPWFAKREFVEYLDHVGLGHVPRLTRVEWGVLRSSLGKPRRFSEQFLKEEREKLHQYRESVRTHYAELRAGIGEGLPTDLARPLSVGQRVIAVHPKTREIHDGSVLIV--DRSRYRIQFDSPELGVEFVMDIDC 777          
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1137175679|gb|OMO53706.1| (hypothetical protein CCACVL1_28433 [Corchorus capsularis])

HSP 1 Score: 93.9745 bits (232), Expect = 2.547e-16
Identity = 60/182 (32.97%), Postives = 93/182 (51.10%), Query Frame = 0
Query:   24 SFKKGHRRIPTS--DHRPRSLAQSLST-----SVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARI--SQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196
            S  KG   +P +    R  +L + LS        RR+ V E+FY+T+D  +     F + LD +GL H+ +++R EW ++R   G+ RR S  FL++ER+KLH++R   R   ++ ++     L   +   L+VG  V A   K   +  G +L    D SRYRIQF+ P LG     D + 
Sbjct:  599 SIVKGKSSVPVTLFHDRAHNLKEKLSNFLSSYQARRWCVFEWFYSTIDYPWFAKREFVEYLDHVGLGHVPRLTRVEWGVLRSSLGKPRRFSEQFLKEEREKLHQYRESVRTHYAELRAGIGEGLPTDLARPLSVGQRVIAVHPKTREIHDGSVLIV--DRSRYRIQFDSPELGVEFVMDIDC 778          
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1050637785|ref|XP_017641988.1| (PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Gossypium arboreum])

HSP 1 Score: 93.9745 bits (232), Expect = 2.957e-16
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 0
Query:   46 LSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPL----YLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196
             S   RR+   E+FY+T+D  +     F + LD +GL HI +++R EW ++R   G+ RR S  FL++ER+KL+++R   R  +  +  H  +   +P      L+VG  V A   K   +  G +LT +Y  SRYRIQF+ P LG     D + 
Sbjct:  621 CSYQARRWCAFEWFYSTIDYPWFAKREFVEYLDHVGLGHIPRLTRVEWGVIRSSLGKPRRFSVQFLKEEREKLNQYRESVR--RHYAELHAGIGEGLPTDLARPLSVGQPVIAVHPKTREIHDGSVLTVDY--SRYRIQFDSPELGVEFVMDVDC 771          
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1050637783|ref|XP_017641987.1| (PREDICTED: protein ALWAYS EARLY 3 isoform X1 [Gossypium arboreum])

HSP 1 Score: 93.9745 bits (232), Expect = 2.960e-16
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 0
Query:   46 LSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPL----YLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196
             S   RR+   E+FY+T+D  +     F + LD +GL HI +++R EW ++R   G+ RR S  FL++ER+KL+++R   R  +  +  H  +   +P      L+VG  V A   K   +  G +LT +Y  SRYRIQF+ P LG     D + 
Sbjct:  623 CSYQARRWCAFEWFYSTIDYPWFAKREFVEYLDHVGLGHIPRLTRVEWGVIRSSLGKPRRFSVQFLKEEREKLNQYRESVR--RHYAELHAGIGEGLPTDLARPLSVGQPVIAVHPKTREIHDGSVLTVDY--SRYRIQFDSPELGVEFVMDVDC 773          
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1021027704|gb|KZM85491.1| (hypothetical protein DCAR_027087 [Daucus carota subsp. sativus])

HSP 1 Score: 93.5893 bits (231), Expect = 3.749e-16
Identity = 71/259 (27.41%), Postives = 124/259 (47.88%), Query Frame = 0
Query:   50 VRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARI--SQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL----SIQGIPS--FTHNTSSDPSDGIFPTQAGNKHFFQACTTTKGSSFGQSGFDNISWASFSKSIDFSSPAD----QGKVEVVQLMIFTLRMLHRKEILLEILETFDRQV 296
            VRR+   E+FY+ +D  +     F + L  +GL H+ +++  EW ++R   G+ RR S  FL++E+QKL+++R   R   ++ +S     L   +   L+VG  V A   K   +  G +LT +++  R R+QF+ P LG     D +      ++ +P+    H +++DP++ I     G     Q  +    S       DN+S    S+ I +S P+     Q K   VQ +    R L +K++L+  L   +  V
Sbjct:  593 VRRWCAYEWFYSAIDYPWFAKREFVEYLLHVGLGHVPRLTHVEWGVIRSSLGKPRRFSEQFLKEEKQKLNQYRDSVRTHYTELRSGTREGLPADLARPLSVGQRVIAIHPKTREIHDGSVLTVDHN--RCRVQFDRPELGVEFVMDIDCMPLNPLENMPTSLTIHMSAADPNNLIKFKMNG-----QMGSVVVDSQAKMGPKDNVS----SQQISYSQPSSLAQIQAKEADVQAIADLTRALEKKQVLVSELREMNNDV 840          
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|147863246|emb|CAN82618.1| (hypothetical protein VITISV_000119 [Vitis vinifera])

HSP 1 Score: 93.2041 bits (230), Expect = 3.839e-16
Identity = 55/172 (31.98%), Postives = 91/172 (52.91%), Query Frame = 0
Query:   32 IPTSDHRPRSLAQSLSTS-----VRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARI--SQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196
            IP+   R R+L + LS       VRR+   E+FY+ +D  +     F + LD +GL H+ +++R EW ++R   G+ RR S  FL++E++KL+++R   R   ++ ++     L   +   L+VG  V A   +   +  GK+LT   D +  R+QFE P LG  L  D + 
Sbjct:  309 IPSVQDRARTLKEKLSNCLSCYRVRRWCAFEWFYSAIDYPWFAKKEFVEYLDHVGLGHVPRLTRVEWGVIRSSLGKPRRFSEQFLKEEKEKLNQYRDSVRTHYTELRAGTREGLPTDLAPPLSVGQRVVALHPRTREIHDGKVLTV--DRTWCRVQFERPELGVELVMDIDC 478          
The following BLAST results are available for this feature:
BLAST of EWM27156.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109336|gb|EWM27156.1|0.000e+0100.00always early protein 3 [Nannochloropsis gaditana][more]
gi|1028966700|ref|XP_016726874.1|1.224e-1634.84PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Goss... [more]
gi|1028966698|ref|XP_016726873.1|1.269e-1634.84PREDICTED: protein ALWAYS EARLY 3 isoform X1 [Goss... [more]
gi|168011027|ref|XP_001758205.1|2.135e-1635.40predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1137236636|gb|OMO98453.1|2.465e-1632.97hypothetical protein COLO4_13902 [Corchorus olitor... [more]
gi|1137175679|gb|OMO53706.1|2.547e-1632.97hypothetical protein CCACVL1_28433 [Corchorus caps... [more]
gi|1050637785|ref|XP_017641988.1|2.957e-1634.84PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Goss... [more]
gi|1050637783|ref|XP_017641987.1|2.960e-1634.84PREDICTED: protein ALWAYS EARLY 3 isoform X1 [Goss... [more]
gi|1021027704|gb|KZM85491.1|3.749e-1627.41hypothetical protein DCAR_027087 [Daucus carota su... [more]
gi|147863246|emb|CAN82618.1|3.839e-1631.98hypothetical protein VITISV_000119 [Vitis vinifera... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3498rna3498Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications