EWM27156.1, cds3489 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|585109336|gb|EWM27156.1| (always early protein 3 [Nannochloropsis gaditana]) HSP 1 Score: 1192.95 bits (3085), Expect = 0.000e+0 Identity = 577/577 (100.00%), Postives = 577/577 (100.00%), Query Frame = 0 Query: 1 MELSDSSNPSPYISENFYRQMLVSFKKGHRRIPTSDHRPRSLAQSLSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTELSIQGIPSFTHNTSSDPSDGIFPTQAGNKHFFQACTTTKGSSFGQSGFDNISWASFSKSIDFSSPADQGKVEVVQLMIFTLRMLHRKEILLEILETFDRQVRKSLESKSPRNSLPMNTRKSYGSSGANYGLRDRNKLFHPKSTDSISALRNDILWNDSSLLIQEYHWIFHAFRRSNVAFKSAFGRLLIHGKSRYISSGQIVPRSWNAELGKKKRPNNFADDVVRGAWKESISAISHHIQTVSYDETIEEIPRISSSRDIGKRKVLSGQDHVLLKSAVAMLFVLKECADKQFSQMQSYDRDKVMSFVALEMERTLLALLLKVQRGVLTIPRLLHKKRGMDQYDTEKEEEEKIGTSLEALELAKAALSGKIASAVIALQHAMAG 577 MELSDSSNPSPYISENFYRQMLVSFKKGHRRIPTSDHRPRSLAQSLSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTELSIQGIPSFTHNTSSDPSDGIFPTQAGNKHFFQACTTTKGSSFGQSGFDNISWASFSKSIDFSSPADQGKVEVVQLMIFTLRMLHRKEILLEILETFDRQVRKSLESKSPRNSLPMNTRKSYGSSGANYGLRDRNKLFHPKSTDSISALRNDILWNDSSLLIQEYHWIFHAFRRSNVAFKSAFGRLLIHGKSRYISSGQIVPRSWNAELGKKKRPNNFADDVVRGAWKESISAISHHIQTVSYDETIEEIPRISSSRDIGKRKVLSGQDHVLLKSAVAMLFVLKECADKQFSQMQSYDRDKVMSFVALEMERTLLALLLKVQRGVLTIPRLLHKKRGMDQYDTEKEEEEKIGTSLEALELAKAALSGKIASAVIALQHAMAG Sbjct: 1 MELSDSSNPSPYISENFYRQMLVSFKKGHRRIPTSDHRPRSLAQSLSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTELSIQGIPSFTHNTSSDPSDGIFPTQAGNKHFFQACTTTKGSSFGQSGFDNISWASFSKSIDFSSPADQGKVEVVQLMIFTLRMLHRKEILLEILETFDRQVRKSLESKSPRNSLPMNTRKSYGSSGANYGLRDRNKLFHPKSTDSISALRNDILWNDSSLLIQEYHWIFHAFRRSNVAFKSAFGRLLIHGKSRYISSGQIVPRSWNAELGKKKRPNNFADDVVRGAWKESISAISHHIQTVSYDETIEEIPRISSSRDIGKRKVLSGQDHVLLKSAVAMLFVLKECADKQFSQMQSYDRDKVMSFVALEMERTLLALLLKVQRGVLTIPRLLHKKRGMDQYDTEKEEEEKIGTSLEALELAKAALSGKIASAVIALQHAMAG 577
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1028966700|ref|XP_016726874.1| (PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Gossypium hirsutum]) HSP 1 Score: 95.1301 bits (235), Expect = 1.224e-16 Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 0 Query: 46 LSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPL----YLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196 S RR+ E+FY+T+D + F + LD +GL HI +++R EW ++R G+ RR S FL++ER+KL+++R R + + H + +P L+VG V A K + G +LT +Y SRYRIQF+ P LG D + Sbjct: 621 CSYQARRWCAFEWFYSTIDYPWFTKREFVEYLDHVGLGHIPRLTRVEWGVIRSSLGKPRRFSEQFLKEEREKLNQYRESVR--RHYAELHAGIGEGLPTDLARPLSVGQRVIAVHPKTREIHDGSVLTVDY--SRYRIQFDSPELGVEFVMDVDC 771
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1028966698|ref|XP_016726873.1| (PREDICTED: protein ALWAYS EARLY 3 isoform X1 [Gossypium hirsutum]) HSP 1 Score: 95.1301 bits (235), Expect = 1.269e-16 Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 0 Query: 46 LSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPL----YLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196 S RR+ E+FY+T+D + F + LD +GL HI +++R EW ++R G+ RR S FL++ER+KL+++R R + + H + +P L+VG V A K + G +LT +Y SRYRIQF+ P LG D + Sbjct: 623 CSYQARRWCAFEWFYSTIDYPWFTKREFVEYLDHVGLGHIPRLTRVEWGVIRSSLGKPRRFSEQFLKEEREKLNQYRESVR--RHYAELHAGIGEGLPTDLARPLSVGQRVIAVHPKTREIHDGSVLTVDY--SRYRIQFDSPELGVEFVMDVDC 773
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|168011027|ref|XP_001758205.1| (predicted protein [Physcomitrella patens] >gi|162690661|gb|EDQ77027.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 94.3597 bits (233), Expect = 2.135e-16 Identity = 57/161 (35.40%), Postives = 83/161 (51.55%), Query Frame = 0 Query: 46 LSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHF--DLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTELSIQGIPSF 204 L VRR+ + E+FY+ +D + N F + L+ GL H+ +++R EW ++R G+ RRLS FL++ER+KL +R R + N L + LTVG V A K + G ILT D SR R+QF+ P LG L D I +P + Sbjct: 698 LCPKVRRWCMCEWFYSAIDLPWFARNEFVEYLNHAGLGHVPRLTRVEWGVIRGSLGKPRRLSKRFLQEEREKLETYRESVRTHYHELRNGLREGLPADLARPLTVGQKVIARHPKTREIHDGSILT--VDRSRCRVQFDRPELGVELVMD----IDAMPMY 852
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1137236636|gb|OMO98453.1| (hypothetical protein COLO4_13902 [Corchorus olitorius]) HSP 1 Score: 93.9745 bits (232), Expect = 2.465e-16 Identity = 60/182 (32.97%), Postives = 93/182 (51.10%), Query Frame = 0 Query: 24 SFKKGHRRIPTS--DHRPRSLAQSLST-----SVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARI--SQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196 S KG +P + R +L + LS RR+ V E+FY+T+D + F + LD +GL H+ +++R EW ++R G+ RR S FL++ER+KLH++R R ++ ++ L + L+VG V A K + G +L D SRYRIQF+ P LG D + Sbjct: 598 SIVKGKSSVPVALFHDRAHNLKEKLSNFLSSYQARRWCVFEWFYSTIDYPWFAKREFVEYLDHVGLGHVPRLTRVEWGVLRSSLGKPRRFSEQFLKEEREKLHQYRESVRTHYAELRAGIGEGLPTDLARPLSVGQRVIAVHPKTREIHDGSVLIV--DRSRYRIQFDSPELGVEFVMDIDC 777
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1137175679|gb|OMO53706.1| (hypothetical protein CCACVL1_28433 [Corchorus capsularis]) HSP 1 Score: 93.9745 bits (232), Expect = 2.547e-16 Identity = 60/182 (32.97%), Postives = 93/182 (51.10%), Query Frame = 0 Query: 24 SFKKGHRRIPTS--DHRPRSLAQSLST-----SVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARI--SQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196 S KG +P + R +L + LS RR+ V E+FY+T+D + F + LD +GL H+ +++R EW ++R G+ RR S FL++ER+KLH++R R ++ ++ L + L+VG V A K + G +L D SRYRIQF+ P LG D + Sbjct: 599 SIVKGKSSVPVTLFHDRAHNLKEKLSNFLSSYQARRWCVFEWFYSTIDYPWFAKREFVEYLDHVGLGHVPRLTRVEWGVLRSSLGKPRRFSEQFLKEEREKLHQYRESVRTHYAELRAGIGEGLPTDLARPLSVGQRVIAVHPKTREIHDGSVLIV--DRSRYRIQFDSPELGVEFVMDIDC 778
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1050637785|ref|XP_017641988.1| (PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Gossypium arboreum]) HSP 1 Score: 93.9745 bits (232), Expect = 2.957e-16 Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 0 Query: 46 LSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPL----YLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196 S RR+ E+FY+T+D + F + LD +GL HI +++R EW ++R G+ RR S FL++ER+KL+++R R + + H + +P L+VG V A K + G +LT +Y SRYRIQF+ P LG D + Sbjct: 621 CSYQARRWCAFEWFYSTIDYPWFAKREFVEYLDHVGLGHIPRLTRVEWGVIRSSLGKPRRFSVQFLKEEREKLNQYRESVR--RHYAELHAGIGEGLPTDLARPLSVGQPVIAVHPKTREIHDGSVLTVDY--SRYRIQFDSPELGVEFVMDVDC 771
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1050637783|ref|XP_017641987.1| (PREDICTED: protein ALWAYS EARLY 3 isoform X1 [Gossypium arboreum]) HSP 1 Score: 93.9745 bits (232), Expect = 2.960e-16 Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 0 Query: 46 LSTSVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNHFDLENQMPL----YLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196 S RR+ E+FY+T+D + F + LD +GL HI +++R EW ++R G+ RR S FL++ER+KL+++R R + + H + +P L+VG V A K + G +LT +Y SRYRIQF+ P LG D + Sbjct: 623 CSYQARRWCAFEWFYSTIDYPWFAKREFVEYLDHVGLGHIPRLTRVEWGVIRSSLGKPRRFSVQFLKEEREKLNQYRESVR--RHYAELHAGIGEGLPTDLARPLSVGQPVIAVHPKTREIHDGSVLTVDY--SRYRIQFDSPELGVEFVMDVDC 773
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|1021027704|gb|KZM85491.1| (hypothetical protein DCAR_027087 [Daucus carota subsp. sativus]) HSP 1 Score: 93.5893 bits (231), Expect = 3.749e-16 Identity = 71/259 (27.41%), Postives = 124/259 (47.88%), Query Frame = 0 Query: 50 VRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARI--SQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL----SIQGIPS--FTHNTSSDPSDGIFPTQAGNKHFFQACTTTKGSSFGQSGFDNISWASFSKSIDFSSPAD----QGKVEVVQLMIFTLRMLHRKEILLEILETFDRQV 296 VRR+ E+FY+ +D + F + L +GL H+ +++ EW ++R G+ RR S FL++E+QKL+++R R ++ +S L + L+VG V A K + G +LT +++ R R+QF+ P LG D + ++ +P+ H +++DP++ I G Q + S DN+S S+ I +S P+ Q K VQ + R L +K++L+ L + V Sbjct: 593 VRRWCAYEWFYSAIDYPWFAKREFVEYLLHVGLGHVPRLTHVEWGVIRSSLGKPRRFSEQFLKEEKQKLNQYRDSVRTHYTELRSGTREGLPADLARPLSVGQRVIAIHPKTREIHDGSVLTVDHN--RCRVQFDRPELGVEFVMDIDCMPLNPLENMPTSLTIHMSAADPNNLIKFKMNG-----QMGSVVVDSQAKMGPKDNVS----SQQISYSQPSSLAQIQAKEADVQAIADLTRALEKKQVLVSELREMNNDV 840
BLAST of EWM27156.1 vs. NCBI_GenBank
Match: gi|147863246|emb|CAN82618.1| (hypothetical protein VITISV_000119 [Vitis vinifera]) HSP 1 Score: 93.2041 bits (230), Expect = 3.839e-16 Identity = 55/172 (31.98%), Postives = 91/172 (52.91%), Query Frame = 0 Query: 32 IPTSDHRPRSLAQSLSTS-----VRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARI--SQRQSVNHFDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTEL 196 IP+ R R+L + LS VRR+ E+FY+ +D + F + LD +GL H+ +++R EW ++R G+ RR S FL++E++KL+++R R ++ ++ L + L+VG V A + + GK+LT D + R+QFE P LG L D + Sbjct: 309 IPSVQDRARTLKEKLSNCLSCYRVRRWCAFEWFYSAIDYPWFAKKEFVEYLDHVGLGHVPRLTRVEWGVIRSSLGKPRRFSEQFLKEEKEKLNQYRDSVRTHYTELRAGTREGLPTDLAPPLSVGQRVVALHPRTREIHDGKVLTV--DRTWCRVQFERPELGVELVMDIDC 478 The following BLAST results are available for this feature:
BLAST of EWM27156.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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