rna3491, rna3491 (mRNA) Nannochloropsis gaditana

Overview
Namerna3491
Unique Namerna3491
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length351
Alignment locationCM002461.1:538715..540469 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g47.6159.mrna
Orig protein idgnl|cribi|Naga_100010g47.6159
GbkeymRNA
Noteencoded by transcript variant 3; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:538715..540469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g47gene3364Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3491rna3491-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27189.1cds3482Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3491 ID=rna3491|Name=rna3491|organism=Nannochloropsis gaditana|type=mRNA|length=351bp
ATGCAGAATTATGGCATTCCTTTTCTCATTGGACTCCTAGCTGTTTGTGA
TCTAACGCAAGAAAGCCCTGGTACAACAAGAGGCTTCAGAATCGAGCACC
TGCACGAAGAGCACGGGCTGCGCCGAAAGTATCGTCGCCGCAAGATGGAC
AACGTAAAACGCTTGAAGTGCGAAGTAGATGTCAGCTTAGCGCTGTCAAG
ATATGAACTATGCGACTCAGGCACACCAGCTACATTTCTTCGACACATCG
AAGTGATTAAGATCGGACGCATTTGGGAAACAAACGGAGACATATCTGAA
GTGCAAGATTCGATTTTGATGTGGGCGTCGGGCAGTAAGAATTGCCGTTG
A
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protein sequence of rna3491

>rna3491-protein ID=rna3491-protein|Name=rna3491|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MRMLMCVYKQSSAFRWLNSTLQISNRHGGTLNFHSMSQVPWTRIREFKEE
QERKKRHKVESGQEASRSQRDVLQHETRSQGQETEENSFLGRFKGTYFKE
RLLFGGVVGSVTGAFFGGREYMLPLCTNKIAQGRINVIAAIEYMKRHMDS
CEADPFCVYLTVCMAYTAWLEILQQ
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mRNA from alignment at CM002461.1:538715..540469+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3491 ID=rna3491|Name=rna3491|organism=Nannochloropsis gaditana|type=mRNA|length=1755bp|location=Sequence derived from alignment at CM002461.1:538715..540469+ (Nannochloropsis gaditana)
AGTAGCACAATGTCACTCATGTGACAGGGCTTTCAAGGAGGGTGAGATCC
ATTTACTGAACGCATATCCCCTCCTGAGAAAGTCAACAACTTTGCACGAG
CACTTGTACATATGCCTCCTGCACTCTTGTTGTTTTTTCCAAGGACTAAG
CAaattctcctctctcccaatGCGTATGCTCATGTGCGTTTATAAACAAT
CATCTGCATTTCGATGGTTAAATTCAACTCTACAAATCTCAAACAGGCAC
GGGGGCACACTCAATTTTCATTCGATGTCTCAAGTACCCTGGACCCGAAT
TCGTGAGTTcaaagaggagcaggaaaggaaaaaacgaCATAAAGTGGAGT
CCGGACAAGAAGCTTCTCGGTCTCAACGTGACGTTCTTCAACATGAAACA
AGAAGTCAGGGTcaagagacggaggagaacTCATTTCTGGGGCGTTTTAA
AGGAACTTATTTCAAGGAGCGCCTTCTCTTTGGTGGCGTGGTGGGCAGCG
TCACTGGCGCGTTTTTCGGAGGACGTGAGTACATGCTACCGTTGTGTACA
AACAAAATAGCCCAAGGACGAATCAACGTAATCGCAGCTATTGAATATAT
GAAAAGACATATGGACTCGTGTGAAGCAGACCCCTTCTGTGTGTATCTCA
CTGTTTGCATGGCTTACACTGCATGGCTAGAAATACTACAACAATAAAAC
AAGAACGAATAGCGAGTAGTTGAGACATTTGTGAGCAGTATGGTTTCTAT
AAGCCGAAAGTTATCTGGACTATTTGTAAGGATGATAAGCCTTGTTGTAT
CGGGACCTTCTGTTTCCTGCTTTGTTGAAAAGCTGACTCACCCTCGTGCT
AAAAGTTGAATGTCCGCTTATCCCTACAGTAGATGCAGTACAGGGTATTA
AAAAGGGTAAAGCCTTTGGCGTGGTGTTGAACAACTTTCAAGCTAAAGTA
AAATTTTCTGCCGAACACGTCGGCAGTGCTGCGGCTATCTTTTCCATGTA
AGTGATAGTAACATATCTGACTTGACCCAGCTACAACGCTTTCATTCGAC
TGAAACTCCAAACATATAATTGGAACGCTATCGTTACATATGGCATCTTA
TACAAATTTAACCTTGCTATGTCCACCTGTCTGCGGTCTCCCGCTTCTCT
TACAGCTTCTATTCGTCCTATCAGGGCATAAAATACATAACGAAGGTGGC
TCGAAGTGAATGTGATTGGGGAAATCCCGCCACAGCAGCTTTGTGTACCA
TACCACCTCTCCTGATCTCAACAGCGTTTCGTCGCAATGTACCGTATGCC
GTCCTATTGATTGGTATGGATGTTATCAGCGACGCGTCgtcatcgtctcc
ttccagTGGCACCCGTACGTCCTAAGCCATGCACGCGATGTCTTCTTTCG
TGCGAATACCAGGAAATATAGTACAAGAATTTCAAAGAAAAATTACGCGT
GACAGGCCTTCCAGGGCAAAAAGACTCCCACACTCGTGGATTCGCACGTT
TCATTCTTCAGATCACGGCCAATCTTGACTTAGAGCTCCTCTCTCGGACC
TTTTTTAAGTTCATCAAGAGGAGCACGCAAAGCTTTAGCAAGGGAGGCTG
TGACAATGCGTTTACCTGTAAATGGCCTCCGGGAATGCATCACGGTGTGA
TTGTCAATCAATATGAAGTCACCCCGACACCATGGAAATGCCACTGCAAG
CTCCTCCATTAGCCTACCAGCTACCGTTATGAGGCTGGGATCAAGGTAGC
TCCCG
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Coding sequence (CDS) from alignment at CM002461.1:538715..540469+

>rna3491 ID=rna3491|Name=rna3491|organism=Nannochloropsis gaditana|type=CDS|length=528bp|location=Sequence derived from alignment at CM002461.1:538715..540469+ (Nannochloropsis gaditana)
atGCGTATGCTCATGTGCGTTTATAAACAATCATCTGCATTTCGATGGTT
AAATTCAACTCTACAAATCTCAAACAGGCACGGGGGCACACTCAATTTTC
ATTCGATGTCTCAAGTACCCTGGACCCGAATTCGTGAGTTcaaagaggag
caggaaaggaaaaaacgaCATAAAGTGGAGTCCGGACAAGAAGCTTCTCG
GTCTCAACGTGACGTTCTTCAACATGAAACAAGAAGTCAGGGTcaagaga
cggaggagaacTCATTTCTGGGGCGTTTTAAAGGAACTTATTTCAAGGAG
CGCCTTCTCTTTGGTGGCGTGGTGGGCAGCGTCACTGGCGCGTTTTTCGG
AGGACGTGAGTACATGCTACCGTTGTGTACAAACAAAATAGCCCAAGGAC
GAATCAACGTAATCGCAGCTATTGAATATATGAAAAGACATATGGACTCG
TGTGAAGCAGACCCCTTCTGTGTGTATCTCACTGTTTGCATGGCTTACAC
TGCATGGCTAGAAATACTACAACAATAA
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Synonyms
Publications