rna349, rna349 (mRNA) Nannochloropsis gaditana

Overview
Namerna349
Unique Namerna349
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length558
Alignment locationCM002455.1:857298..857962 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g147.1832.mrna
Orig protein idgnl|cribi|Naga_100003g147.1832
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:857298..857962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g147gene336Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna349rna349-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30315.1cds349Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna349 ID=rna349|Name=rna349|organism=Nannochloropsis gaditana|type=mRNA|length=558bp
ATGATTTCGCTTCTCGCCGAGTTTCCCTCATCACAGGCTTCTACGGATGA
ATCACTGCCCGGTGATTCAAGGCACAATTTCAACGTGTGGCCGGAAATCT
TAGGTCATTTTATCTCACAGGCTTGTCTCGCCTTCACCCAACGCTCACAC
TTCGAGCCAGCGGAAGGGATGGCTCACGGTAGCCGTTGCCTGACTTCTGC
CTTCCGTCATTTTCGCTCTCCTTATGAGATGACGGTGGGAGCTCGGTGGT
CGCCCGGCGGCTGCCATAGAAAGCTGTCCACAGAGGCAGAATCAACCTCG
CTGACGTCGAACAAAGGTTCATCCTTCTTCCAGCGGTTGTCTTCTTTTCT
AGCTGGCGTAGGGGTTACATCGTTGGTGGGCTACTTTTTTTTAATTCAAG
ACGTCAAGCGCTCGACTGATTCCGTCCATGACCTTCTGAGAGTAGTGCAT
CAAGCCTCACATAAGCGGACAGAAGCGTGCGACGGTGTTCGAGTTTCAGC
AAAAGAAAAGAAGTCAGACCTCTCACAGGAGGACCTCCACCGGGAACATA
AAATTTGA
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protein sequence of rna349

>rna349-protein ID=rna349-protein|Name=rna349|organism=Nannochloropsis gaditana|type=polypeptide|length=181bp
MRLDLLCCFFAPVLLSRGEAFLVTPPLEKLQHICSTASAILGSTTHPMAN
RKIQFSDNEDNTDRVTQVELRGDGSVSFISDSTNAVDVQGSWRPGDEGKV
GFLLERFYSDSGDSKYSMTRIYEGTITISGTSIRGEGRIEMEKYNDLFTC
GFFSLISVDDDPDDFFEKLKPGHTVMQGIDQ
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mRNA from alignment at CM002455.1:857298..857962+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna349 ID=rna349|Name=rna349|organism=Nannochloropsis gaditana|type=mRNA|length=665bp|location=Sequence derived from alignment at CM002455.1:857298..857962+ (Nannochloropsis gaditana)
ATGAGACTTGATCTACtctgctgcttcttcgcGCCGGTCCTCCTGTCTCG
AGGCGAAGCATTCCTTGTGACACCACCCCTCGAAAAGCTGCAACATATAT
GCTCCACTGCTAGTGCTATACTGGGTTCTACTACTCACCCAATGGCCAAT
AGGAAGATCCAGTTCTCCGACAATGAAGACAAGTGAGTCGTAACGCACGT
TATTCGCTTTAGTTGGCGTGTAATGAGCTGGGATGGCGTAGAAAAACACG
ATATCATACTAACCTTATGACTCCTTCTTTATCGAAACATTGATGCATTA
GCACGGATCGCGTGACACAAGTTGAATTGCGTGGGGATGGAAGCGTCAGC
TTTATCTCCGATAGCACCAACGCTGTAGACGTGCAGGGTAGCTGGCGTCC
TGGTGATGAAGGAAAAGTCGGCTTTCTATTGGAGCGCTTTTACTCCGATA
GCGGAGACAGCAAGTATAGCATGACAAGGATTTATGAAGGTACGATTACG
ATCTCGGGCACCTCTATTCGCGGTGAAGGTAGGATTGAGATGGAAAAATA
CAATGATCTCTTCACGTGTggcttcttttccttgatAAGTGTTGACGACG
ACCCGGACGATTTTTTTGAGAAGCTAAAACCTGGCCACACAGTGATGCAA
GGGATTGATCAGTGA
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Coding sequence (CDS) from alignment at CM002455.1:857298..857962+

>rna349 ID=rna349|Name=rna349|organism=Nannochloropsis gaditana|type=CDS|length=1092bp|location=Sequence derived from alignment at CM002455.1:857298..857962+ (Nannochloropsis gaditana)
ATGAGACTTGATCTACtctgctgcttcttcgcGCCGGTCCTCCTGTCTCG
AGGCGAAGCATTCCTTGTGACACCACCCCTCGAAAAGCTGCAACATATAT
GCTCCACTGCTAGTGCTATACTGGGTTCTACTACTCACCCAATGGCCAAT
AGGAAGATCCAGTTCTCCGACAATGAAGACAACACGGATCGCGTGACACA
AGTTGAATTGCGTGGGGATGGAAGCGTCAGCTTTATCTCCGATAGCACCA
ACGCTGTAGACGTGCAGGGTAGCTGGCGTCCTGGTGATGAAGGAAAAGTC
GGCTTTCTATTGGAGCGCTTTTACTCCGATAGCGGAGACAGCAAGTATAG
CATGACAAGGATTTATGAAGGTACGATTACGATCTCGGGCACCTCTATTC
GCGGTGAAGGTAGGATTGAGATGGAAAAATACAATGATCTCTTCACGTGT
ggcttcttttccttgatAAGTGTTGACGACGACCCGGACGATTTTTTTGA
GAAGCTAAAACCTGGCCACACAGTGATGCAAGGGATTGATCAGTGAATGA
GACTTGATCTACtctgctgcttcttcgcGCCGGTCCTCCTGTCTCGAGGC
GAAGCATTCCTTGTGACACCACCCCTCGAAAAGCTGCAACATATATGCTC
CACTGCTAGTGCTATACTGGGTTCTACTACTCACCCAATGGCCAATAGGA
AGATCCAGTTCTCCGACAATGAAGACAACACGGATCGCGTGACACAAGTT
GAATTGCGTGGGGATGGAAGCGTCAGCTTTATCTCCGATAGCACCAACGC
TGTAGACGTGCAGGGTAGCTGGCGTCCTGGTGATGAAGGAAAAGTCGGCT
TTCTATTGGAGCGCTTTTACTCCGATAGCGGAGACAGCAAGTATAGCATG
ACAAGGATTTATGAAGGTACGATTACGATCTCGGGCACCTCTATTCGCGG
TGAAGGTAGGATTGAGATGGAAAAATACAATGATCTCTTCACGTGTggct
tcttttccttgatAAGTGTTGACGACGACCCGGACGATTTTTTTGAGAAG
CTAAAACCTGGCCACACAGTGATGCAAGGGATTGATCAGTGA
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Synonyms
Publications