rna3485, rna3485 (mRNA) Nannochloropsis gaditana

Overview
Namerna3485
Unique Namerna3485
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1728
Alignment locationCM002461.1:526343..528309 -

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF647
Orig transcript idgnl|cribi|Naga_100010g39.6169.mrna
Orig protein idgnl|cribi|Naga_100010g39.6169
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:526343..528309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g39gene3358Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27199.1cds3476Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3485rna3485-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3485 ID=rna3485|Name=rna3485|organism=Nannochloropsis gaditana|type=mRNA|length=1728bp
AGAGACGGGTATTGTAGAAAGAGAATGTTTTTGTCTCAAGCGATGATGTA
ATAGTCATTTAGTATTGTAATTCCGTGCGGACGAATGTTGAATTGAAGGA
GTCGGGCCTGAAAAAGGAGAGGAATAGGTAAAGCAGCCCTCCTCGGGGTT
TCTCCATCTCGTACTAGCCTGAGGCATTGAGGGACAGGTGTAGGAGCCCC
ACACGCACATCTAAACTTGAACGAAAAATTGTGCACGAGTCGAGCTCTAG
CAAGCGAAGGATATGAGAAAAACTGGATGTTACGTCACTCTTGGCTGGAC
AAGAGGTATTTCTTTGCAGAAAATAGTGAAGAGCAACCACAAAAGTGGAA
GCAGGCAGGAGGCAGCAGTACACCAACGTAAGGGTCTCGATGCATGGGAC
AAGCAGATAATTTTGTTGCTGTAGAAGACGGTATGATGTTGCCCTGTATG
CTTTTGGGGTATTTTCGCTCTGCTGTACTGCAGCAACGCTATGCTTTTTA
GATGCTGGATTATACGGCAAGTATTCGCCATTCAACGACGTGCTTCAGCT
CTAAAAGCCCATCACTTACACAGAGAATGTCTTCGTCCAGTAAAAGACCA
CGCGATTATGACGAAGAACGCGAAGATGAAGAGTACGACGATGAAGAGGA
GCTGAGCAGTGACGAGGAGCCTCAGCATTTGCCCAGAAAGGACCTAGAGA
AGCCTGTCCCGCCCTCAATCTCGGAAGCAGGACATGAAAGTACGGGTGAC
CCTGGTCGACAGCAGTCCCTGACTACAGGATCAAATTGCAAACTTAGATA
TTCACTGGTTTGCTCGAGTAATATGAACCGCTCCATGGAGGCGCACGCGG
CTTTCCTCAATGCCGGTTTCACGAAAGTAGCCAGCTTGGGCACTGGGAGG
ATGGTGCGTTTGCCGGCAGCCACGATCGAAGGCCAAATATCGTTTGATTT
TGGAACGCCATATACAGACATTTTAAAAGAGCTTGAAAGCCAATCAGAGA
CAGACGTCAGGTTGCAAGACTTTTATCGGCGGACAAAACTGCTGGACATC
TTGCGTCGGAATGCGCGAATCAAGACTGCACCCGAGCGGCTTCAGGAGAT
TCAAGAATTAGCGTACGATGTCATCCTATGCTTTGACCTGAGAGTATACG
ATGCCGTCCAAGAGGATCTGCAGAGTCGCGAAGCCAAAGACCTGGAGCCT
ATTTGCGTCATCTGCATCGATACGAAGGATGATCCGCAGCAAGCTGTCCT
TGCGGGCCGCGTGGCCGTAAGCCTTGCACAACTGCTGGAGGAGAGCGTCG
ACCTGGCTACCGAGGCTCCTGAGATTGTCGAGGCATTCATGGCTAAAGAG
GGCCGGCGTCTGCTTTTTCAAATTTGTTATCTATAGACCGACGGAAAAGA
AATATAAATTAGGAAGAGGTACAACAAGAAGGGCTCTTTCCAAGTCTCTT
TCCTGCAGAATCATTCAATTATCTTGTGGTATATCCATCCCTCGGGTGAA
AGCAACACGCGTTCCAGATTCCACCCCTGCCGTCGAAGTCCTTGCACCAT
GTTTGGGAAGCACTGACACAATTCCTGATATGTGGAAGAGATCACACTTG
AGATTATCTCTATATTCTCTGTCCCTTTTTTCCTTTTCACGGCCTCAAAG
CCTCTCCGCGCGATGAGATCGGCATGGAGACACGCTTTCAGCAGAGTCAA
ATTTGTTGCATCCTCTCGTAAAGCCACC
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protein sequence of rna3485

>rna3485-protein ID=rna3485-protein|Name=rna3485|organism=Nannochloropsis gaditana|type=polypeptide|length=559bp
MMDKRLTFPWLLPVILAVMTADATTDAFLSHLPSHKGDPSMSMVNVADVA
LISESRSGSNDGNFFISYGMEQNGRLIPLPVPHSPTLSRPSDASRVSTPH
YDSRANRYSSIMWVIRKQSEVRSIVRNAKRRLKTLLHTVFLPVGFPSSVA
PEYLRYQQWNVVQDLSTYLRGILATQAILEGVGVGREGATPLAATLQWIT
RDGASMMSGLVFTSFLSTNFGVNAKSWRLFADFMVDIGITLDMLAPLFPK
NFLLCICLASVCKSLCGIAAGASNGNIVEHMARTNNLAEVLAKGGAQHTA
VSLFGLGFGMWFARVANQSPRRVWTAYTLLTVIHLTANYAAMRVLAFTSI
NRRRLNVLLTAFRENASVLSPAEVARRETIIVDVGRWRPPKLWTALFQKG
KRRATAELAKDAHAPIWNIRLGVRVKDLTRFAEGLTELQRLFSQEQYMLN
MVNVFDGELPTRKVTRKIQIAVALREDATNLTLLKACLHADLIARRGFEA
VKRKKGTENIEIISSVISSTYQELCQCFPNMVQGLRRQGWNLERVLLSPE
GWIYHKIIE
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mRNA from alignment at CM002461.1:526343..528309-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3485 ID=rna3485|Name=rna3485|organism=Nannochloropsis gaditana|type=mRNA|length=1967bp|location=Sequence derived from alignment at CM002461.1:526343..528309- (Nannochloropsis gaditana)
CATTGAACAGGAATGATGGACAAAAGACTCACATTCCCATGGTTGCTGCC
GGTCATCTTGGCAGTAATGACGGCGGATGCCACCACGGACGCTTTCTTAA
GTCACTTGCCCTCTCACAAAGGAGACCCGAGCATGAGCATGGTAAATGTA
GCCGATGTTGCCTTGATTTCTGAAAGCCGATCAGGGAGCAACGACGGAAA
TTTTTTTATTTCGTATGGCATGGAACAAAACGGTCGCTTGATTCCTCTTC
CTGTCCCCCACTCGCCTACCCTATCACGGCCTTCCGATGCGTCGCGAGTC
TCCACACCACACTATGATAGCCGTGCAAACAGGTACTCTAGTATAATGTG
GGTCATCAGAAAGCAGAGTGAAGTCCGGTCTATTGTACGAAACGCGAAAC
GAAGGCTGAAGACGTTATTGCACACTGTTTTCTTGCCAGTTGGGTTCCCG
TCGAGCGTGGCTCCGGAATATCTGCGATATCAGCAATGGAATGTTGTACA
GGATTTAAGCACTTACTTGCGTGGCATTTTGGCAACGCAGGCTATACTAG
AAGGTGTAGGCGTAGGGCGGGAAGGGGCTACACCCTTGGCAGCGACACTC
CAATGGATCACACGGGACGGAGCGTCTATGATGAGTGGACTCGTGTTTAC
ATCCTTCTTGAGCACCAATTTTGGTGTCAATGCCAAAAGCTGGCGTCTCT
TCGCCGATTTCATGGTTGATATTGGTATTACACTAGATATGTTAGCCCCA
CTTTTCCCCAAAAACTTTTTGCTATGCATATGTCTCGCCTCGGTTTGCAA
AAGTCTCTGTGGAATCGCTGCTGGGGCCTCGAATGGCAACATAGTCGAGC
ACATGGCTAGAACCAACAATCTCGCCGAGGTACTAGCCAAAGGTGGGGCT
CAGCATACAGCTGTGAGCCTTTTCGGACTCGGATTCGGGATGTGGTTCGC
CCGCGTAGCCAACCAATCCCCTCGCCGAGTGTGGACGGCATACACACTGC
TAACTGTCATTCACCTCACAGCTAATTACGCGGCCATGCGCGTGTTAGCC
TTCACGTCCATCAACCGTCGCCGTCTTAACGTGCTGTTGACGGCATTTCG
AGAAAACGCCAGCGTCTTATCACCAGCCGAGGTAGCTCGCCGGGAGACAA
TCATCGTGGACGTGGGGCGTTGGCGGCCCCCAAAGTTGTGGACCGCCTTA
TTTCAAAAGGGAAAGAGGAGGGCGACAGCAGAATTGGCAAAGGATGCTCA
TGCGCCTATCTGGAACATACGTTTGGGGGTACGTGTGAAGGACCTCACAA
GGTTCGCCGAGGGGCTTACGGAGTTGCAACGCCTGTTTTCCCAAGAGCAA
TATATGTTGAACATGGTCAACGTCTTTGACGGTGAACTGCCGACAAGAAA
AGTTACAAGGAAGATCCAGATTGCGGTGGCTTTACGAGAGGATGCAACAA
ATTTGACTCTGCTGAAAGCGTGTCTCCATGCCGATCTCATCGCGCGGAGA
GGCTTTGAGGCCGTGAAAAGGAAAAAAGGGACAGAGAATATAGAGATAAT
CTCAAGTGTGATCTCTTCCACATATCAGGAATTGTGTCAGTGCTTCCCAA
ACATGGTGCAAGGACTTCGACGGCAGGGGTGGAATCTGGAACGCGTGTTG
CTTTCACCCGAGGGATGGATATACCACAAGATAATTGAATGATTCTGCAG
GAAAGAGACTTGGAAAGAGCCCTTCTTGTTGTACCTCTTCCTAATTTATA
TTTCTTTTCCGTCGGTCTATAGATAACAAATTTGAAAAAGCAGACGCCGG
CCCTCTTTAGCCATGAATGCCTCGACAATCTCAGGAGCCTCGGTAGCCAG
GTCGACGCTCTCCTCCAGCTGTGCAAATTGGATGAAATGGAAAGTAGTGA
ATAGTACCGGTGGTCGGGTATGATGGCGGGAATTATTACAACCGCTAAGG
CAAGTCATAAAAGCCAG
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Coding sequence (CDS) from alignment at CM002461.1:526343..528309-

>rna3485 ID=rna3485|Name=rna3485|organism=Nannochloropsis gaditana|type=CDS|length=1680bp|location=Sequence derived from alignment at CM002461.1:526343..528309- (Nannochloropsis gaditana)
ATGATGGACAAAAGACTCACATTCCCATGGTTGCTGCCGGTCATCTTGGC
AGTAATGACGGCGGATGCCACCACGGACGCTTTCTTAAGTCACTTGCCCT
CTCACAAAGGAGACCCGAGCATGAGCATGGTAAATGTAGCCGATGTTGCC
TTGATTTCTGAAAGCCGATCAGGGAGCAACGACGGAAATTTTTTTATTTC
GTATGGCATGGAACAAAACGGTCGCTTGATTCCTCTTCCTGTCCCCCACT
CGCCTACCCTATCACGGCCTTCCGATGCGTCGCGAGTCTCCACACCACAC
TATGATAGCCGTGCAAACAGGTACTCTAGTATAATGTGGGTCATCAGAAA
GCAGAGTGAAGTCCGGTCTATTGTACGAAACGCGAAACGAAGGCTGAAGA
CGTTATTGCACACTGTTTTCTTGCCAGTTGGGTTCCCGTCGAGCGTGGCT
CCGGAATATCTGCGATATCAGCAATGGAATGTTGTACAGGATTTAAGCAC
TTACTTGCGTGGCATTTTGGCAACGCAGGCTATACTAGAAGGTGTAGGCG
TAGGGCGGGAAGGGGCTACACCCTTGGCAGCGACACTCCAATGGATCACA
CGGGACGGAGCGTCTATGATGAGTGGACTCGTGTTTACATCCTTCTTGAG
CACCAATTTTGGTGTCAATGCCAAAAGCTGGCGTCTCTTCGCCGATTTCA
TGGTTGATATTGGTATTACACTAGATATGTTAGCCCCACTTTTCCCCAAA
AACTTTTTGCTATGCATATGTCTCGCCTCGGTTTGCAAAAGTCTCTGTGG
AATCGCTGCTGGGGCCTCGAATGGCAACATAGTCGAGCACATGGCTAGAA
CCAACAATCTCGCCGAGGTACTAGCCAAAGGTGGGGCTCAGCATACAGCT
GTGAGCCTTTTCGGACTCGGATTCGGGATGTGGTTCGCCCGCGTAGCCAA
CCAATCCCCTCGCCGAGTGTGGACGGCATACACACTGCTAACTGTCATTC
ACCTCACAGCTAATTACGCGGCCATGCGCGTGTTAGCCTTCACGTCCATC
AACCGTCGCCGTCTTAACGTGCTGTTGACGGCATTTCGAGAAAACGCCAG
CGTCTTATCACCAGCCGAGGTAGCTCGCCGGGAGACAATCATCGTGGACG
TGGGGCGTTGGCGGCCCCCAAAGTTGTGGACCGCCTTATTTCAAAAGGGA
AAGAGGAGGGCGACAGCAGAATTGGCAAAGGATGCTCATGCGCCTATCTG
GAACATACGTTTGGGGGTACGTGTGAAGGACCTCACAAGGTTCGCCGAGG
GGCTTACGGAGTTGCAACGCCTGTTTTCCCAAGAGCAATATATGTTGAAC
ATGGTCAACGTCTTTGACGGTGAACTGCCGACAAGAAAAGTTACAAGGAA
GATCCAGATTGCGGTGGCTTTACGAGAGGATGCAACAAATTTGACTCTGC
TGAAAGCGTGTCTCCATGCCGATCTCATCGCGCGGAGAGGCTTTGAGGCC
GTGAAAAGGAAAAAAGGGACAGAGAATATAGAGATAATCTCAAGTGTGAT
CTCTTCCACATATCAGGAATTGTGTCAGTGCTTCCCAAACATGGTGCAAG
GACTTCGACGGCAGGGGTGGAATCTGGAACGCGTGTTGCTTTCACCCGAG
GGATGGATATACCACAAGATAATTGAATGA
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Synonyms
Publications