rna3484, rna3484 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3484
Unique Name	rna3484
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1732
Alignment location	CM002461.1:524941..526885 +

Link to JBrowse

Properties


Property Name	Value
Product	RNA polymerase II subunit A
Orig transcript id	gnl\|cribi\|Naga_100010g38.6147.mrna
Orig protein id	gnl\|cribi\|Naga_100010g38.6147
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:524941..526885 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g38	gene3357	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3484	rna3484-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27177.1	cds3475	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:524941..526885+
coding sequence from alignment at CM002461.1:524941..526885+

mRNA sequence

>rna3484 ID=rna3484|Name=rna3484|organism=Nannochloropsis gaditana|type=mRNA|length=1732bp
GTCGGATGCCTTCACCGTCTTTGTCAGAGTGCTCAAAACTCTCGCGAGGA
CTACTGTACATCGTCGACAGCTCACCCTGCCATATTGCATACGTTTGGCG
GGCGACTTATCTGGATATGCGGCGCCCCTTTGATTGGCAATAGTTGCTGG
TCACACACCGAGAGTTGCTTGGTGGTGCGGAGACCCCGAGGGACGTTGTG
TTGTTTCGCTTTTTAGTGCATGTCTAGCAAGTTTATCAGCATCCAATACA
TTCATATCCACGCCCTACTTCTCTTTTTCCTTATTGACAACAGGTGCGCA
TACCCAAGCGTTTCTTTTTGCTTATCTCTCCTCCAAAACTGCAGCACTAC
TAGCAGACGAAGCATGCAGTCGCGGTCCCTGCTCACAACTTTCGCAAAGC
AGGAAAGTTGAGTGATATAATGTTGTGTCATTCGTATTAAAAAGTTCTTA
TTGACGTCTGTGACGAATTGAAGTAAAGCTCTCGAGCACAGTCTCGACAA
GGAGGATCCCATGGCGAACATGATCTGCTTGGCTTTCGTGTAAGCTCGCC
ACCCAATTTTTGATCGAGCAGCTCGCATATTATTTTTGAGAAAATAAGGC
GATAATAGAAGTAATTGATCAAAAGTGAGTCTATTGAGGAGGAACTCGCA
AGATGTTGGTTGCGCGACCTGTCTCGACGACTCCACGCATGGGCCGTCAA
TTGCAACGGTACAATGGCAACGTCCGCCTCATCACTGGATGCATTCCGCT
GACTTCAGACGGGAACGTGGTCCTAATCAGCTCCAGAACGGGAGACTGGA
TCCTCCCCAAGGGGGGTTGGGAGAGGGACGAGACTGCCCGGGAGGCAGCT
GCACGAGAAACGTACGAAGAGGGAGGCGTACATGGCCTGGTTCACGCTGA
GCCTTTCTCAGAGACAAGCTACAGGAACAAGCGTGGCGAGGAATGCCACT
TGCTGCTCTTTGTGATGGAGGTCTCAGAGCTGCTTCCGCAGTGGCCGGAA
TCATCTGTGCGGCGACGTCGGCTATGCTCCCTCAGCGAAGCAATCGACAT
ATGTGGAAAAGAAGAACACCGCGCTGCACTGCTAAGTATCAAGCTGCAAG
GTTTGAACACATTGTTCACCGGCGAAGAAAGCCAGGAGGAAGACTCGCGA
CGTGAAGGACATCTTGAATTGCATGGTGCAGGCAGCCACCACCCGAATGG
GTCCGATTCTATACCCGACCAGCCTTTATTTTCGAGTGAGGCAAGCGATG
GTTGTGACAGTGCCGAATTTCCAGGGCTAATTTTATCTACGCGGAGGCCT
GGTCTCGAACGTGGCAAAACAGATCGAGATGTTGAGCTAATCGGGAAGGT
TGAGTCATAGGAAGGGTCCGAGTAGGCCTTGATTATCGATGTATGAGACC
TCTGGACTAGGAGCTGAGCATATTAGCACGCTAACTACTAAAGGTGCGGG
GGTAGACTGAGAGCAAGTTGACGGATGTGCTGAGCTGAAAATTGATTGAA
AACAAAACCTACGATACCTTTTCTTATAATAGATCAGATTTCAAGGCGAA
TGATGTGGCTTAAACTTCAAATCTTTACCTGAGATATTTTTAATTTTATC
ACGTCAGTGTCATGTAACTATGATGATGACCCGTAATGTCAATTTGCAAG
ACGTCACATCACGCAAGCAAATATGCATGCTGCTTGAGGACCGTTTGAAA
ATCCAATTGTCTCTCTGCCTCCCGACTAAGCA

protein sequence of rna3484

>rna3484-protein ID=rna3484-protein|Name=rna3484|organism=Nannochloropsis gaditana|type=polypeptide|length=294bp
MLDYTASIRHSTTCFSSKSPSLTQRMSSSSKRPRDYDEEREDEEYDDEEE
LSSDEEPQHLPRKDLEKPVPPSISEAGHESTGDPGRQQSLTTGSNCKLRY
SLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDF
GTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEI
QELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVL
AGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICYL

mRNA from alignment at CM002461.1:524941..526885+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3484 ID=rna3484|Name=rna3484|organism=Nannochloropsis gaditana|type=mRNA|length=1945bp|location=Sequence derived from alignment at CM002461.1:524941..526885+ (Nannochloropsis gaditana)
AGAGACGGGTATTGTAGAAAGAGAATGTTTTTGTCTCAAGCGATGATGTA
ATAGTCATTTAGTATTGTAATTCCGTGCGGACGAATGTTGAATTGAAGGA
GTCGGGCctgaaaaaggagaggaataGGTAAAGCAGCCCTCCTCGGGGTT
TCTCCATCTCGTACTAGCCTGAGGCATTGAGGGACAGGTGTAGGAGCCCC
ACACGCACATCTAAACTTGAACGAAAAATTGTGCACGAGTCGAGCTCTAG
CAAGCGAAGGATATGAGAAAAACTGGATGTTACGTCACTCTTGGCTGGAC
AAGAGGTATTTCTTTGCAGAAAATAGTGAAGAGCAACCACAAAAGTGGAA
GCAGGCAGGAGGCAGCAGTACACCAACGTAAGGGTCTCGATGCATGGGAC
AAGCAGATAATTTTGTTGCTGTAGAAGACGGTATGATGTTGCCCTGTATG
CTTTTGGGGTATTTTCGCTCTGCTGTACTGCAGCAACGCTATGCTTTTTA
GATGCTGGATTATACGGCAAGTATTCGCCATTCAACGACGTGCTTCAGCT
CTAAAAGCCCATCACTTACACAGAGAATGTCTTCGTCCAGTAAAAGACCA
CGCGATTATGACGAAGAACGCGAAGATGAAGAGTacgacgatgaagagga
gctgaGCAGTGACGAGGAGCCTCAGCATTTGCCCAGAAAGGACCTAGAGA
AGCCTGTCCCGCCCTCAATCTCGGAAGCAGGACATGAAAGTACGGGTGAC
CCTGGTCGACAGCAGTCCCTGACTACAGGATCAAATTGCAAACTTAGATA
TTCACTGGTTTGCTCGAGTAATATGAACCGCTCCATGGAGGCGCACGCGG
CTTTCCTCAATGCCGGTTTCACGAAAGTAGCCAGCTTGGGCACTGGGAGG
ATGGTGCGTTTGCCGGCAGCCACGATCGAAGGCCAAATATCGTTTGATTT
TGGAACGCCATATACAGACATTTTAAAAGAGCTTGAAAGCCAATCAGAGA
CAGACGTCAGGTTGCAAGACTTTTATCGGCGGACAAAACTGCTGGACATC
TTGCGTCGGAATGCGCGAATCAAGACTGCACCCGAGCGGCTTCAGGAGAT
TCAAGAATTAGCGTACGATGTCATCCTATGCTTTGACCTGAGAGTATACG
ATGCCGTCCAAGAGGATCTGCAGGTACGTTTTCCTTAAGGGTCCATGCTA
GTCAAGCAACTTGCAGGCCTAGCTCACTTCGTCACTATttctgggaggga
agagtcgCGAAGCCAAAGACCTGGAGCCTATTTGCGTCATCTGCATCGAT
ACGAAGGATGATCCGCAGCAAGCTGTCCTTGCGGGCCGCGTGGCCGTAAG
CCTTGCACAACTGGTGAGAGTACGACGATGTCGCCCCGAAACCGACTATC
TGCTGGCTTTTATGACTTGCCTTAGCGGTTGTAATAATTCCCGCCATCAT
ACCCGACCACCGGTACTATTCACTACTTTCCATTTCATCCAATTTGCAca
gctggaggagagcgtCGACCTGGCTACCGAGGCTCCTGAGATTGTCGAGG
CATTCATGGCTAAAGAGGGCCGGCGTCTGCTTTTTCAAATTTGTTATCTA
TAGACCGACGGAAAAGAAATATAAATTAGGAAGAGGTACAACAAGAAGGG
CTCTTTCCAAGTCTCTTTCCTGCAGAATCATTCAATTATCTTGTGGTATA
TCCATCCCTCGGGTGAAAGCAACACGCGTTCCAGATTCCACCCCTGCCGT
CGAAGTCCTTGCACCATGTTTGGGAAGCACTGACACAATTCCTGATATGT
GGAAGAGATCACACTTGAGATTATCTCTATATTCTctgtcccttttttcc
ttttcacgGCCTCAAAGCCTCTCCGCGCGATGAGATCGGCATGGAGACAC
GCTTTCAGCAGAGTCAAATTTGTTGCATCCTCTCGTAAAGCCACC

Coding sequence (CDS) from alignment at CM002461.1:524941..526885+

>rna3484 ID=rna3484|Name=rna3484|organism=Nannochloropsis gaditana|type=CDS|length=2655bp|location=Sequence derived from alignment at CM002461.1:524941..526885+ (Nannochloropsis gaditana)
ATGCTGGATTATACGGCAAGTATTCGCCATTCAACGACGTGCTTCAGCTC
TAAAAGCCCATCACTTACACAGAGAATGTCTTCGTCCAGTAAAAGACCAC
GCGATTATGACGAAGAACGCGAAGATGAAGAGTacgacgatgaagaggag
ctgaGCAGTGACGAGGAGCCTCAGCATTTGCCCAGAAAGGACCTAGAGAA
GCCTGTCCCGCCCTCAATCTCGGAAGCAGGACATGAAAGTACGGGTGACC
CTGGTCGACAGCAGTCCCTGACTACAGGATCAAATTGCAAACTTAGATAT
TCACTGGTTTGCTCGAGTAATATGAACCGCTCCATGGAGGCGCACGCGGC
TTTCCTCAATGCCGGTTTCACGAAAGTAGCCAGCTTGGGCACTGGGAGGA
TGGTGCGTTTGCCGGCAGCCACGATCGAAGGCCAAATATCGTTTGATTTT
GGAACGCCATATACAGACATTTTAAAAGAGCTTGAAAGCCAATCAGAGAC
AGACGTCAGGTTGCAAGACTTTTATCGGCGGACAAAACTGCTGGACATCT
TGCGTCGGAATGCGCGAATCAAGACTGCACCCGAGCGGCTTCAGGAGATT
CAAGAATTAGCGTACGATGTCATCCTATGCTTTGACCTGAGAGTATACGA
TGCCGTCCAAGAGGATCTGCAGagtcgCGAAGCCAAAGACCTGGAGCCTA
TTTGCGTCATCTGCATCGATACGAAGGATGATCCGCAGCAAGCTGTCCTT
GCGGGCCGCGTGGCCGTAAGCCTTGCACAACTGctggaggagagcgtCGA
CCTGGCTACCGAGGCTCCTGAGATTGTCGAGGCATTCATGGCTAAAGAGG
GCCGGCGTCTGCTTTTTCAAATTTGTTATCTATAGATGCTGGATTATACG
GCAAGTATTCGCCATTCAACGACGTGCTTCAGCTCTAAAAGCCCATCACT
TACACAGAGAATGTCTTCGTCCAGTAAAAGACCACGCGATTATGACGAAG
AACGCGAAGATGAAGAGTacgacgatgaagaggagctgaGCAGTGACGAG
GAGCCTCAGCATTTGCCCAGAAAGGACCTAGAGAAGCCTGTCCCGCCCTC
AATCTCGGAAGCAGGACATGAAAGTACGGGTGACCCTGGTCGACAGCAGT
CCCTGACTACAGGATCAAATTGCAAACTTAGATATTCACTGGTTTGCTCG
AGTAATATGAACCGCTCCATGGAGGCGCACGCGGCTTTCCTCAATGCCGG
TTTCACGAAAGTAGCCAGCTTGGGCACTGGGAGGATGGTGCGTTTGCCGG
CAGCCACGATCGAAGGCCAAATATCGTTTGATTTTGGAACGCCATATACA
GACATTTTAAAAGAGCTTGAAAGCCAATCAGAGACAGACGTCAGGTTGCA
AGACTTTTATCGGCGGACAAAACTGCTGGACATCTTGCGTCGGAATGCGC
GAATCAAGACTGCACCCGAGCGGCTTCAGGAGATTCAAGAATTAGCGTAC
GATGTCATCCTATGCTTTGACCTGAGAGTATACGATGCCGTCCAAGAGGA
TCTGCAGagtcgCGAAGCCAAAGACCTGGAGCCTATTTGCGTCATCTGCA
TCGATACGAAGGATGATCCGCAGCAAGCTGTCCTTGCGGGCCGCGTGGCC
GTAAGCCTTGCACAACTGctggaggagagcgtCGACCTGGCTACCGAGGC
TCCTGAGATTGTCGAGGCATTCATGGCTAAAGAGGGCCGGCGTCTGCTTT
TTCAAATTTGTTATCTATAGATGCTGGATTATACGGCAAGTATTCGCCAT
TCAACGACGTGCTTCAGCTCTAAAAGCCCATCACTTACACAGAGAATGTC
TTCGTCCAGTAAAAGACCACGCGATTATGACGAAGAACGCGAAGATGAAG
AGTacgacgatgaagaggagctgaGCAGTGACGAGGAGCCTCAGCATTTG
CCCAGAAAGGACCTAGAGAAGCCTGTCCCGCCCTCAATCTCGGAAGCAGG
ACATGAAAGTACGGGTGACCCTGGTCGACAGCAGTCCCTGACTACAGGAT
CAAATTGCAAACTTAGATATTCACTGGTTTGCTCGAGTAATATGAACCGC
TCCATGGAGGCGCACGCGGCTTTCCTCAATGCCGGTTTCACGAAAGTAGC
CAGCTTGGGCACTGGGAGGATGGTGCGTTTGCCGGCAGCCACGATCGAAG
GCCAAATATCGTTTGATTTTGGAACGCCATATACAGACATTTTAAAAGAG
CTTGAAAGCCAATCAGAGACAGACGTCAGGTTGCAAGACTTTTATCGGCG
GACAAAACTGCTGGACATCTTGCGTCGGAATGCGCGAATCAAGACTGCAC
CCGAGCGGCTTCAGGAGATTCAAGAATTAGCGTACGATGTCATCCTATGC
TTTGACCTGAGAGTATACGATGCCGTCCAAGAGGATCTGCAGagtcgCGA
AGCCAAAGACCTGGAGCCTATTTGCGTCATCTGCATCGATACGAAGGATG
ATCCGCAGCAAGCTGTCCTTGCGGGCCGCGTGGCCGTAAGCCTTGCACAA
CTGctggaggagagcgtCGACCTGGCTACCGAGGCTCCTGAGATTGTCGA
GGCATTCATGGCTAAAGAGGGCCGGCGTCTGCTTTTTCAAATTTGTTATC
TATAG

Synonyms

Publications