EWM27177.1, cds3475 (CDS) Nannochloropsis gaditana

Overview
NameEWM27177.1
Unique Namecds3475
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:525442..526113 +
Alignment locationCM002461.1:526193..526303 +
Alignment locationCM002461.1:526442..526543 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27177.1
ProductRNA polymerase II subunit A
Orig transcript idgnl|cribi|Naga_100010g38.6147.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:525442..526113 +
CM002461.1supercontigCM002461.1:526193..526303 +
CM002461.1supercontigCM002461.1:526442..526543 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004721phosphoprotein phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006464cellular protein modification process
GO:0006397mRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR006811RNA_pol_II_suA
Homology
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|585109357|gb|EWM27177.1| (RNA polymerase II subunit A [Nannochloropsis gaditana])

HSP 1 Score: 601.282 bits (1549), Expect = 0.000e+0
Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
Query:    1 MLDYTASIRHSTTCFSSKSPSLTQRMSSSSKRPRDYDEEREDEEYDDEEELSSDEEPQHLPRKDLEKPVPPSISEAGHESTGDPGRQQSLTTGSNCKLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEIQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICYL 294
            MLDYTASIRHSTTCFSSKSPSLTQRMSSSSKRPRDYDEEREDEEYDDEEELSSDEEPQHLPRKDLEKPVPPSISEAGHESTGDPGRQQSLTTGSNCKLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEIQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICYL
Sbjct:    1 MLDYTASIRHSTTCFSSKSPSLTQRMSSSSKRPRDYDEEREDEEYDDEEELSSDEEPQHLPRKDLEKPVPPSISEAGHESTGDPGRQQSLTTGSNCKLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEIQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICYL 294          
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|1072230799|gb|OEU15532.1| (Ssu72-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 163.696 bits (413), Expect = 6.647e-46
Identity = 95/233 (40.77%), Postives = 134/233 (57.51%), Query Frame = 0
Query:   71 PSISEAGHESTGDPGRQQSLTTGSNCKLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGT-PYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEIQE---LAYDVILCFDLRVYDAVQEDLQSREAKD-LEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAF----MAKEGRRLLFQICYL 294
            PS  E     +  PG        +  +  + +VCSSN+NRSMEAH    NAG  +V S GTG  VRLP  T      + FG+ PY ++   + S  E +    DF+ R K+L + RR A +K +P+R Q++       +DV++ F+ R+YDAV EDLQ RE  +   PI VIC+DTKD+P +A L G+VA+ L   LE + DL TEAPEI++ F    M     ++L+Q+CYL
Sbjct:    2 PSAYETIPRPSTPPGLPPQEAHHAPSRRSFGVVCSSNINRSMEAHVVLGNAGL-RVESYGTGTQVRLPGRTAMEPRIYKFGSVPYEEMYNSMTSTPEDE----DFFTRNKVLHLCRRGAAVKRSPQRWQDMTSDFVSQHDVVIAFEERIYDAVVEDLQMREPTESFAPIHVICLDTKDNPHEAQLQGQVALDLCWRLEAAQDLVTEAPEILDQFEKEKMTHTPIKVLYQLCYL 229          
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|302801969|ref|XP_002982740.1| (hypothetical protein SELMODRAFT_179725 [Selaginella moellendorffii] >gi|302818428|ref|XP_002990887.1| hypothetical protein SELMODRAFT_185661 [Selaginella moellendorffii] >gi|300141218|gb|EFJ07931.1| hypothetical protein SELMODRAFT_185661 [Selaginella moellendorffii] >gi|300149330|gb|EFJ15985.1| hypothetical protein SELMODRAFT_179725 [Selaginella moellendorffii])

HSP 1 Score: 155.992 bits (393), Expect = 2.181e-43
Identity = 83/199 (41.71%), Postives = 126/199 (63.32%), Query Frame = 0
Query:   97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQE-IQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEES-VDLATEAPEIVEAFMAKEGRRLLFQICY 293
            KLR+++VC+SN NRSMEAHA     G   V+S GTG  V+LP  TI     + FGTPYT I+++L+++        D Y+R  LL +L+RNA +K AP+R Q+   + A+DV+L F+ RV+D V EDLQ+RE    + + V+ +D KD+ ++A +  ++A+ L + LEES  +   E  +IV  F  +  RRL++ IC+
Sbjct:    2 KLRHAMVCASNQNRSMEAHALLQREGLD-VSSYGTGNQVKLPGPTIRDPNIYQFGTPYTAIIEDLKNKDP------DLYKRNGLLPMLKRNASVKDAPQRWQDNAGDGAFDVVLTFEERVFDLVNEDLQNREQTLFKTVLVVNLDVKDNHEEAAVGAKLALDLCKKLEESEKNWEDEIDDIVRRFEKQHKRRLIYTICF 193          
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|551675904|ref|XP_005840706.1| (hypothetical protein GUITHDRAFT_64039 [Guillardia theta CCMP2712] >gi|428184872|gb|EKX53726.1| hypothetical protein GUITHDRAFT_64039 [Guillardia theta CCMP2712])

HSP 1 Score: 154.451 bits (389), Expect = 1.074e-42
Identity = 79/199 (39.70%), Postives = 124/199 (62.31%), Query Frame = 0
Query:   97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEI-QELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICYL 294
            +L ++ VCSSNMNRSMEAH   L++GF  V S GTG  VRLP  + +    ++FGTPY +IL +L+ + E      + YR   L+ +L+RN  +K APER Q++ Q    DV+L ++ RV+DAV +DLQ RE++++  + VI ++T D  ++AV+A +    L ++LE + DL +E  E++  F     R  ++ + YL
Sbjct:    7 RLNFATVCSSNMNRSMEAHKQLLHSGFN-VTSFGTGTNVRLPGPSQDKPNVYEFGTPYAEILVDLQRKDE------NLYRNNGLIAMLQRNVNVKRAPERWQDMDQNRKLDVVLTYEERVFDAVLQDLQGRESENMRAMHVINLETIDKHEEAVIAAQDTCQLCRMLESAADLESEIMEVLSKFEKNSKRSFMYSLVYL 198          
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|747043326|ref|XP_011083279.1| (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Sesamum indicum])

HSP 1 Score: 150.984 bits (380), Expect = 2.261e-41
Identity = 80/198 (40.40%), Postives = 121/198 (61.11%), Query Frame = 0
Query:   97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQE-IQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICY 293
            KLRY++VCSSN NRSMEAHA     GF  VAS GTG+ V+LP  ++     ++FGTPY  +L +L  +        + YRR  +L +L+RN  +KTAP+R QE   +  +DV+L F+ +V+D V EDL +R    L+P+ VI ++ KD+ ++A + GR+A+ L Q LE   +      +++  F  +  R+LL+ I Y
Sbjct:    2 KLRYAMVCSSNQNRSMEAHALLKREGFD-VASYGTGQHVKLPGPSLREPNVYEFGTPYKHMLDDLRRKDP------ELYRRNGILPMLKRNVSVKTAPQRWQENAADGTFDVVLTFEEKVFDMVIEDLHNRNHVLLKPVLVINLEVKDNHEEAAIGGRLALQLCQELETIENWEDCVDDVIINFERQNNRKLLYSISY 192          
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|848907016|ref|XP_012852702.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Erythranthe guttata] >gi|604305347|gb|EYU24491.1| hypothetical protein MIMGU_mgv1a014344mg [Erythranthe guttata])

HSP 1 Score: 150.214 bits (378), Expect = 4.310e-41
Identity = 76/198 (38.38%), Postives = 122/198 (61.62%), Query Frame = 0
Query:   97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQE-IQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICY 293
            KLR+++VCSSN NRSMEAHA     GF  VAS GTG+ V+LP  ++     +DFGTPY  + ++L  +        + YRR  +L +L+RN  +K AP+R Q+   +  +DV+L F+ +V+DAV EDL +R    L+P+ VI ++ KD+ ++A + GR+A+ L Q +E + +      +++  F  +  R+L++ I Y
Sbjct:    2 KLRHAMVCSSNQNRSMEAHAVLKREGFD-VASYGTGQHVKLPGPSLREPNVYDFGTPYKHMFEDLRRKD------TELYRRNGILPMLKRNLGVKLAPQRWQDNAADGTFDVVLTFEEKVFDAVIEDLHNRNHVLLKPVLVINLEVKDNHEEAAIGGRLALQLCQEIENTENWEDSVDDVIMNFERQNHRKLVYSISY 192          
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|1210527436|dbj|GAX14071.1| (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Fistulifera solaris])

HSP 1 Score: 151.369 bits (381), Expect = 4.617e-41
Identity = 89/209 (42.58%), Postives = 123/209 (58.85%), Query Frame = 0
Query:   97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQE-----IQELAYDVILCFDLRVYDAVQEDLQSRE-AKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATE-APEIVEAFMAKEGR----RLLFQICYL 294
            K+ + +VCSSN+NRSMEAH    NAG  +V S G+G  VRLP  T      F FGTPY  +   L           +++ R  +L + RR A +K AP R Q+     IQ  ++ V++ F+ R+YDAV EDLQ RE  +D +PI VIC+DTKD+PQ+A L G+VA+ L   LE + D   E A EI++ F  +       R+L+Q+CYL
Sbjct:   31 KISFGVVCSSNINRSMEAHLVLGNAGL-RVESYGSGTQVRLPGKTAMEPKIFKFGTPYEHMFHNLALDD------AEYFSRNGVLQLCRRGAAVKRAPNRWQDTPTDVIQ--SHAVVIAFEERIYDAVIEDLQIREPTEDFKPIHVICLDTKDNPQEAALQGQVALDLCWRLEHAADEIDERAAEIIDEFQQERIHVTPIRILYQVCYL 230          
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|1026035759|ref|XP_016564034.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X2 [Capsicum annuum])

HSP 1 Score: 148.288 bits (373), Expect = 2.406e-40
Identity = 80/198 (40.40%), Postives = 122/198 (61.62%), Query Frame = 0
Query:   97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQE-IQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICY 293
            KLRY++VCSSN NRSMEAH+     GF  VAS GTG+ V+LP  +I     +DFGTPY  +  +L  +   D+ L   Y+R  +L +L+RN  +K AP+R QE   +  +DV+L F+ +V+D V EDL +R+   L+P+ VI ++ KD+ ++A + GR A+ L Q LE + +      +I+  F  +  R+LL+ I +
Sbjct:    2 KLRYAMVCSSNQNRSMEAHSLLKREGFD-VASYGTGQHVKLPGPSIREPNVYDFGTPYKHMFDDLRRK---DIEL---YKRNGILPMLKRNLSVKLAPQRWQENAADGPFDVVLTFEEKVFDLVLEDLHNRDQVLLKPVLVINLEVKDNHEEAAVGGRQALILCQELEATENWEETIDDIINNFEKQHRRKLLYNISF 192          
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|634354177|gb|KDE09206.1| (hypothetical protein MVLG_00528 [Microbotryum lychnidis-dioicae p1A1 Lamole])

HSP 1 Score: 150.984 bits (380), Expect = 7.601e-40
Identity = 91/229 (39.74%), Postives = 129/229 (56.33%), Query Frame = 0
Query:   66 EKPV-PPSISEAGHESTGDPGRQQSLTTGSNCKLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEIQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICY 293
            EKP  PP+ S     S GDP    +  T +  +L + +VC+SN NRSME H     A F  V S GTG  VRLP   I+    + FGTPY  + ++L++Q E        Y    LL++L RN RIKTAPER QE Q++A DV++  + R YDAV +DL +R  +   P+ +I I+ KD+ ++A +AG+  + L   +E + DL  E   I+E  MAK   +LL  + Y
Sbjct:  108 EKPFEPPTTS-----SLGDPFPPSTKDTKNGHRLTFCVVCASNQNRSMEGHNVLSKANF-NVISAGTGSAVRLPGPAIDRPNIYTFGTPYEHMYQDLKAQDER------LYTANGLLNMLDRNRRIKTAPERWQESQKVA-DVVITCEERCYDAVCDDLLTRGGEMNRPVHIINIEIKDNHEEAHIAGKTMLDLCSSIEAAKDLDEEMNSIIEKHMAKHPHQLLHTVLY 323          
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|697121435|ref|XP_009614690.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Nicotiana tomentosiformis] >gi|1025325136|ref|XP_016504840.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Nicotiana tabacum])

HSP 1 Score: 146.747 bits (369), Expect = 8.734e-40
Identity = 77/198 (38.89%), Postives = 120/198 (60.61%), Query Frame = 0
Query:   97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQE-IQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICY 293
            KLRY++VCSSN NRSMEAH      GF  VAS GTG+ V+LP  +I     +DFGTPY  +  +L  +        + Y+R  +L +L+RN  +KTAP+R QE   +  +DV+L F+ +V+D V EDL +R    L+P+ +I ++ KD+ ++A + GR+A+ L Q L+ + +      +I+  F  +  R+LL+ I +
Sbjct:    2 KLRYAMVCSSNQNRSMEAHCLLKREGFD-VASYGTGQHVKLPGPSIREPNVYDFGTPYKHMFDDLRRKDP------ELYKRNGILPMLKRNLGVKTAPQRWQENAADGCFDVVLTFEEKVFDLVLEDLHNRNQVLLKPVLIINLEVKDNHEEAAVGGRLALLLCQELDATENWEDTIDDIINNFEKQHRRKLLYSISF 192          
The following BLAST results are available for this feature:
BLAST of EWM27177.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109357|gb|EWM27177.1|0.000e+0100.00RNA polymerase II subunit A [Nannochloropsis gadit... [more]
gi|1072230799|gb|OEU15532.1|6.647e-4640.77Ssu72-like protein [Fragilariopsis cylindrus CCMP1... [more]
gi|302801969|ref|XP_002982740.1|2.181e-4341.71hypothetical protein SELMODRAFT_179725 [Selaginell... [more]
gi|551675904|ref|XP_005840706.1|1.074e-4239.70hypothetical protein GUITHDRAFT_64039 [Guillardia ... [more]
gi|747043326|ref|XP_011083279.1|2.261e-4140.40RNA polymerase II subunit A C-terminal domain phos... [more]
gi|848907016|ref|XP_012852702.1|4.310e-4138.38PREDICTED: RNA polymerase II subunit A C-terminal ... [more]
gi|1210527436|dbj|GAX14071.1|4.617e-4142.58RNA polymerase II subunit A C-terminal domain phos... [more]
gi|1026035759|ref|XP_016564034.1|2.406e-4040.40PREDICTED: RNA polymerase II subunit A C-terminal ... [more]
gi|634354177|gb|KDE09206.1|7.601e-4039.74hypothetical protein MVLG_00528 [Microbotryum lych... [more]
gi|697121435|ref|XP_009614690.1|8.734e-4038.89PREDICTED: RNA polymerase II subunit A C-terminal ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3484rna3484Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications