EWM27177.1, cds3475 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|585109357|gb|EWM27177.1| (RNA polymerase II subunit A [Nannochloropsis gaditana]) HSP 1 Score: 601.282 bits (1549), Expect = 0.000e+0 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
Query: 1 MLDYTASIRHSTTCFSSKSPSLTQRMSSSSKRPRDYDEEREDEEYDDEEELSSDEEPQHLPRKDLEKPVPPSISEAGHESTGDPGRQQSLTTGSNCKLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEIQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICYL 294
MLDYTASIRHSTTCFSSKSPSLTQRMSSSSKRPRDYDEEREDEEYDDEEELSSDEEPQHLPRKDLEKPVPPSISEAGHESTGDPGRQQSLTTGSNCKLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEIQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICYL
Sbjct: 1 MLDYTASIRHSTTCFSSKSPSLTQRMSSSSKRPRDYDEEREDEEYDDEEELSSDEEPQHLPRKDLEKPVPPSISEAGHESTGDPGRQQSLTTGSNCKLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEIQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICYL 294
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|1072230799|gb|OEU15532.1| (Ssu72-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 163.696 bits (413), Expect = 6.647e-46 Identity = 95/233 (40.77%), Postives = 134/233 (57.51%), Query Frame = 0
Query: 71 PSISEAGHESTGDPGRQQSLTTGSNCKLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGT-PYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEIQE---LAYDVILCFDLRVYDAVQEDLQSREAKD-LEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAF----MAKEGRRLLFQICYL 294
PS E + PG + + + +VCSSN+NRSMEAH NAG +V S GTG VRLP T + FG+ PY ++ + S E + DF+ R K+L + RR A +K +P+R Q++ +DV++ F+ R+YDAV EDLQ RE + PI VIC+DTKD+P +A L G+VA+ L LE + DL TEAPEI++ F M ++L+Q+CYL
Sbjct: 2 PSAYETIPRPSTPPGLPPQEAHHAPSRRSFGVVCSSNINRSMEAHVVLGNAGL-RVESYGTGTQVRLPGRTAMEPRIYKFGSVPYEEMYNSMTSTPEDE----DFFTRNKVLHLCRRGAAVKRSPQRWQDMTSDFVSQHDVVIAFEERIYDAVVEDLQMREPTESFAPIHVICLDTKDNPHEAQLQGQVALDLCWRLEAAQDLVTEAPEILDQFEKEKMTHTPIKVLYQLCYL 229
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|302801969|ref|XP_002982740.1| (hypothetical protein SELMODRAFT_179725 [Selaginella moellendorffii] >gi|302818428|ref|XP_002990887.1| hypothetical protein SELMODRAFT_185661 [Selaginella moellendorffii] >gi|300141218|gb|EFJ07931.1| hypothetical protein SELMODRAFT_185661 [Selaginella moellendorffii] >gi|300149330|gb|EFJ15985.1| hypothetical protein SELMODRAFT_179725 [Selaginella moellendorffii]) HSP 1 Score: 155.992 bits (393), Expect = 2.181e-43 Identity = 83/199 (41.71%), Postives = 126/199 (63.32%), Query Frame = 0
Query: 97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQE-IQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEES-VDLATEAPEIVEAFMAKEGRRLLFQICY 293
KLR+++VC+SN NRSMEAHA G V+S GTG V+LP TI + FGTPYT I+++L+++ D Y+R LL +L+RNA +K AP+R Q+ + A+DV+L F+ RV+D V EDLQ+RE + + V+ +D KD+ ++A + ++A+ L + LEES + E +IV F + RRL++ IC+
Sbjct: 2 KLRHAMVCASNQNRSMEAHALLQREGLD-VSSYGTGNQVKLPGPTIRDPNIYQFGTPYTAIIEDLKNKDP------DLYKRNGLLPMLKRNASVKDAPQRWQDNAGDGAFDVVLTFEERVFDLVNEDLQNREQTLFKTVLVVNLDVKDNHEEAAVGAKLALDLCKKLEESEKNWEDEIDDIVRRFEKQHKRRLIYTICF 193
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|551675904|ref|XP_005840706.1| (hypothetical protein GUITHDRAFT_64039 [Guillardia theta CCMP2712] >gi|428184872|gb|EKX53726.1| hypothetical protein GUITHDRAFT_64039 [Guillardia theta CCMP2712]) HSP 1 Score: 154.451 bits (389), Expect = 1.074e-42 Identity = 79/199 (39.70%), Postives = 124/199 (62.31%), Query Frame = 0
Query: 97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEI-QELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICYL 294
+L ++ VCSSNMNRSMEAH L++GF V S GTG VRLP + + ++FGTPY +IL +L+ + E + YR L+ +L+RN +K APER Q++ Q DV+L ++ RV+DAV +DLQ RE++++ + VI ++T D ++AV+A + L ++LE + DL +E E++ F R ++ + YL
Sbjct: 7 RLNFATVCSSNMNRSMEAHKQLLHSGFN-VTSFGTGTNVRLPGPSQDKPNVYEFGTPYAEILVDLQRKDE------NLYRNNGLIAMLQRNVNVKRAPERWQDMDQNRKLDVVLTYEERVFDAVLQDLQGRESENMRAMHVINLETIDKHEEAVIAAQDTCQLCRMLESAADLESEIMEVLSKFEKNSKRSFMYSLVYL 198
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|747043326|ref|XP_011083279.1| (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Sesamum indicum]) HSP 1 Score: 150.984 bits (380), Expect = 2.261e-41 Identity = 80/198 (40.40%), Postives = 121/198 (61.11%), Query Frame = 0
Query: 97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQE-IQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICY 293
KLRY++VCSSN NRSMEAHA GF VAS GTG+ V+LP ++ ++FGTPY +L +L + + YRR +L +L+RN +KTAP+R QE + +DV+L F+ +V+D V EDL +R L+P+ VI ++ KD+ ++A + GR+A+ L Q LE + +++ F + R+LL+ I Y
Sbjct: 2 KLRYAMVCSSNQNRSMEAHALLKREGFD-VASYGTGQHVKLPGPSLREPNVYEFGTPYKHMLDDLRRKDP------ELYRRNGILPMLKRNVSVKTAPQRWQENAADGTFDVVLTFEEKVFDMVIEDLHNRNHVLLKPVLVINLEVKDNHEEAAIGGRLALQLCQELETIENWEDCVDDVIINFERQNNRKLLYSISY 192
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|848907016|ref|XP_012852702.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Erythranthe guttata] >gi|604305347|gb|EYU24491.1| hypothetical protein MIMGU_mgv1a014344mg [Erythranthe guttata]) HSP 1 Score: 150.214 bits (378), Expect = 4.310e-41 Identity = 76/198 (38.38%), Postives = 122/198 (61.62%), Query Frame = 0
Query: 97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQE-IQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICY 293
KLR+++VCSSN NRSMEAHA GF VAS GTG+ V+LP ++ +DFGTPY + ++L + + YRR +L +L+RN +K AP+R Q+ + +DV+L F+ +V+DAV EDL +R L+P+ VI ++ KD+ ++A + GR+A+ L Q +E + + +++ F + R+L++ I Y
Sbjct: 2 KLRHAMVCSSNQNRSMEAHAVLKREGFD-VASYGTGQHVKLPGPSLREPNVYDFGTPYKHMFEDLRRKD------TELYRRNGILPMLKRNLGVKLAPQRWQDNAADGTFDVVLTFEEKVFDAVIEDLHNRNHVLLKPVLVINLEVKDNHEEAAIGGRLALQLCQEIENTENWEDSVDDVIMNFERQNHRKLVYSISY 192
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|1210527436|dbj|GAX14071.1| (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Fistulifera solaris]) HSP 1 Score: 151.369 bits (381), Expect = 4.617e-41 Identity = 89/209 (42.58%), Postives = 123/209 (58.85%), Query Frame = 0
Query: 97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQE-----IQELAYDVILCFDLRVYDAVQEDLQSRE-AKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATE-APEIVEAFMAKEGR----RLLFQICYL 294
K+ + +VCSSN+NRSMEAH NAG +V S G+G VRLP T F FGTPY + L +++ R +L + RR A +K AP R Q+ IQ ++ V++ F+ R+YDAV EDLQ RE +D +PI VIC+DTKD+PQ+A L G+VA+ L LE + D E A EI++ F + R+L+Q+CYL
Sbjct: 31 KISFGVVCSSNINRSMEAHLVLGNAGL-RVESYGSGTQVRLPGKTAMEPKIFKFGTPYEHMFHNLALDD------AEYFSRNGVLQLCRRGAAVKRAPNRWQDTPTDVIQ--SHAVVIAFEERIYDAVIEDLQIREPTEDFKPIHVICLDTKDNPQEAALQGQVALDLCWRLEHAADEIDERAAEIIDEFQQERIHVTPIRILYQVCYL 230
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|1026035759|ref|XP_016564034.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X2 [Capsicum annuum]) HSP 1 Score: 148.288 bits (373), Expect = 2.406e-40 Identity = 80/198 (40.40%), Postives = 122/198 (61.62%), Query Frame = 0
Query: 97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQE-IQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICY 293
KLRY++VCSSN NRSMEAH+ GF VAS GTG+ V+LP +I +DFGTPY + +L + D+ L Y+R +L +L+RN +K AP+R QE + +DV+L F+ +V+D V EDL +R+ L+P+ VI ++ KD+ ++A + GR A+ L Q LE + + +I+ F + R+LL+ I +
Sbjct: 2 KLRYAMVCSSNQNRSMEAHSLLKREGFD-VASYGTGQHVKLPGPSIREPNVYDFGTPYKHMFDDLRRK---DIEL---YKRNGILPMLKRNLSVKLAPQRWQENAADGPFDVVLTFEEKVFDLVLEDLHNRDQVLLKPVLVINLEVKDNHEEAAVGGRQALILCQELEATENWEETIDDIINNFEKQHRRKLLYNISF 192
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|634354177|gb|KDE09206.1| (hypothetical protein MVLG_00528 [Microbotryum lychnidis-dioicae p1A1 Lamole]) HSP 1 Score: 150.984 bits (380), Expect = 7.601e-40 Identity = 91/229 (39.74%), Postives = 129/229 (56.33%), Query Frame = 0
Query: 66 EKPV-PPSISEAGHESTGDPGRQQSLTTGSNCKLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEIQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICY 293
EKP PP+ S S GDP + T + +L + +VC+SN NRSME H A F V S GTG VRLP I+ + FGTPY + ++L++Q E Y LL++L RN RIKTAPER QE Q++A DV++ + R YDAV +DL +R + P+ +I I+ KD+ ++A +AG+ + L +E + DL E I+E MAK +LL + Y
Sbjct: 108 EKPFEPPTTS-----SLGDPFPPSTKDTKNGHRLTFCVVCASNQNRSMEGHNVLSKANF-NVISAGTGSAVRLPGPAIDRPNIYTFGTPYEHMYQDLKAQDER------LYTANGLLNMLDRNRRIKTAPERWQESQKVA-DVVITCEERCYDAVCDDLLTRGGEMNRPVHIINIEIKDNHEEAHIAGKTMLDLCSSIEAAKDLDEEMNSIIEKHMAKHPHQLLHTVLY 323
BLAST of EWM27177.1 vs. NCBI_GenBank
Match: gi|697121435|ref|XP_009614690.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Nicotiana tomentosiformis] >gi|1025325136|ref|XP_016504840.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Nicotiana tabacum]) HSP 1 Score: 146.747 bits (369), Expect = 8.734e-40 Identity = 77/198 (38.89%), Postives = 120/198 (60.61%), Query Frame = 0
Query: 97 KLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQE-IQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICY 293
KLRY++VCSSN NRSMEAH GF VAS GTG+ V+LP +I +DFGTPY + +L + + Y+R +L +L+RN +KTAP+R QE + +DV+L F+ +V+D V EDL +R L+P+ +I ++ KD+ ++A + GR+A+ L Q L+ + + +I+ F + R+LL+ I +
Sbjct: 2 KLRYAMVCSSNQNRSMEAHCLLKREGFD-VASYGTGQHVKLPGPSIREPNVYDFGTPYKHMFDDLRRKDP------ELYKRNGILPMLKRNLGVKTAPQRWQENAADGCFDVVLTFEEKVFDLVLEDLHNRNQVLLKPVLIINLEVKDNHEEAAVGGRLALLLCQELDATENWEDTIDDIINNFEKQHRRKLLYSISF 192 The following BLAST results are available for this feature:
BLAST of EWM27177.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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