rna3483, rna3483 (mRNA) Nannochloropsis gaditana

Overview
Namerna3483
Unique Namerna3483
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1416
Alignment locationCM002461.1:522875..524818 +

Link to JBrowse

Properties
Property NameValue
Productnudix hydrolase 13
Orig transcript idgnl|cribi|Naga_100010g37.6166.mrna
Orig protein idgnl|cribi|Naga_100010g37.6166
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:522875..524818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g37gene3356Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3483rna3483-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27196.1cds3474Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3483 ID=rna3483|Name=rna3483|organism=Nannochloropsis gaditana|type=mRNA|length=1416bp
GCTAGGGTTTGGGTCGAATGAGAAAAGTTCTTACTCATAACTTGTATCTC
GTTAGTAGTTAGTCCCTCGAAAGGAAGCTTTGACTTCGAACATGATTCTC
CAAGGGCAAGTACTGATCCTCCTTACCACTTATCTCTTTCCAAACTAATC
AAAAAGATTATCTTTGTCGGCAGGTTCATAAGGTAACGCATTCTGCAACC
CTCACGGGAAGCGTAAAATGGCTACACAGCATTTAGCGTCAGCATCCGGC
GAATTGGAAGGGCTTGTGCAGAGCACGGTAAACCTTTTTGGCGGGGTGGC
AGACAAGTTATGGCCGGCCAAAAGTAGGAACCAAGAAAAGCAAGCAGAAA
TTGGAAAAGTTGGAGCTTTGAATAGTGAAGCGTTTGATTCCAATTTTAAA
AAAGATATCAAGACATTCGAAGATCTTGATTTGCTGGAGAGTGGCCATGC
TCGTGAATACATAACAGAAGAATGCCTGCTTCCTTGTCCAACAGTGAAAA
AATGGTCGACTTGCAACGTTATCAAGAACGGAAAATCGACTTTTCGCATG
TACCTGGATGAGGCTCAACCCAGATTCGTCCTCAGCGCCAAGCGTGTAGG
GGACTCTTTTTTCATATCACAGTATGAATCATTTCCTGAAAGTATCAACG
GCGTGCCGGAGGTTTCTTCCTGTGCCGTCCTCCGGACGTGCTCGGAAGGA
TATTTCAAGCTTTTTCTCAACGGGTGCGAAGCGTGCGATAAGAAGGCAGA
CAAATATACGTGTGGTTCTGGCCATAGCTTTGACAATCGACAGCTTTTGG
CAGAGATCAATCATTCTGTCAAAAGGGTAAAAGAGGCAAATGCAGATATG
CGTTGTTTGTCAGTCAAATTACCCGAGGTGCACGAGGACCAGCAGACGAG
GGATGTGTGGTGCCCGCGTATGGAGCAAGCACGTAGATCCAATAATGCAG
AACTGAAAACAAGACATTTCCGTTTGCACAACAAGCTGCCTGAGTGGAAC
GAAGCTCTTCAAAGCTTGGTACTGCGCTTCAATAAAGGTCGCGTGCTGGC
GCCATCAGCAAAGAATTTTTTGATCTGTTTAGACGGTCAGGATAATGGAG
AGGGCGTGCTCCAGTTTGGCAAAACACGGAAAAGGCGTTATGCCTTAGAT
TTTCGCCATCCCGTCAGTCCCCTTCAAGCTTTCGGTATATGTCTATCGTT
TTTTAATTGGAACGTATAGATAAGGGATTCCTGCATATGTAGTGTATTTA
CATCCTACGTAAAGTAGAATCGCTGAGAAGCACAAATCTACTAGGCCGTT
GACATGCACATTGAAAGAAACAAACAATGTACGAAGACTCACGTAAAAAT
CACGGACGGAAGGCAAAGTTTCTGCTTTCTGCTTGACGCACAGTGTAGGC
GGGCGCCAGACTCGGG
back to top

protein sequence of rna3483

>rna3483-protein ID=rna3483-protein|Name=rna3483|organism=Nannochloropsis gaditana|type=polypeptide|length=235bp
MLVARPVSTTPRMGRQLQRYNGNVRLITGCIPLTSDGNVVLISSRTGDWI
LPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEECHL
LLFVMEVSELLPQWPESSVRRRRLCSLSEAIDICGKEEHRAALLSIKLQG
LNTLFTGEESQEEDSRREGHLELHGAGSHHPNGSDSIPDQPLFSSEASDG
CDSAEFPGLILSTRRPGLERGKTDRDVELIGKVES
back to top

mRNA from alignment at CM002461.1:522875..524818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3483 ID=rna3483|Name=rna3483|organism=Nannochloropsis gaditana|type=mRNA|length=1944bp|location=Sequence derived from alignment at CM002461.1:522875..524818+ (Nannochloropsis gaditana)
GTCGGATGCCTTCACCGTCTTTGTCAGAGTGCTCAAAACTCTCGCGAGGA
CTACTGTACATCGTCGACAGCTCACCCTGCCATATTGCATACGTTTGGCG
GGCGACTTATCTGGATATGCGGCGCCCCTTTGATTGGCAATAGTTGCTGG
TCACACACCGAGAGTTGCTTGGTGGTGCGGAGACCCCGAGGGACGTTGTG
TTGTTTCGCTTTTTAGTGCATGTCTAGCAAGTTTATCAGCATCCAATACA
TTCATATCCACGCCCtacttctctttttccttatTGACAACAGGTGCGCA
TACCCAAGCGTTTCTTTTTGCTTATCTCTCCTCCAAAACTGCAGCACTAC
TAGCAGACGAAGCATGCAGTCGCGGTCCCTGCTCACAACTTTCGCAAAGC
AGGAAAGTTGAGTGATATAATGTTGTGTCATTCGTATTAAAAAGTTCTTA
TTGACGTCTGTGACGAATTGAAGTAAAGCTCTCGAGCACAGTCTCGACAA
GGAGGATCCCATGGCGAACATGATCTGCTTGGCTTTCGTGTAAGCTCGCC
ACCCAATTTTTGATCGAGCAGCTCGCATATTATTTTTGAGAAAATAAGGC
GATAATAGAAGTAATTGATCAAAAGTGAGTCTATTGAGGAGGAACTCGCA
AGATGTTGGTTGCGCGACCTGTCTCGACGACTCCACGCATGGGCCGTCAA
TTGCAACGGTACAATGGCAACGTCCGCCTCATCACTGGGTGAGTGAAAAA
GCTTGATACGCACAAGTATCCTTTTTTTCCGGGGAGGCATTACAGGAGTT
GGTGCATGTTGCCAGAGCTTGATTCAGAGTCAAGCGTTTGCTATTTTGAG
GGCTCTTCTACAGCGACACTGTGATGCGACTTTACAACCCCCTTCACTGA
CATAACTTTTCACTTACCCGCCTTCTTCACAATTAAATTTGGACATCTAG
ATGCATTCCGCTGACTTCAGACGGGAACGTGGTCCTAATCAGCTCCAGAA
CGGGAGACTGGATCCTCCCCAAGGGGGgttgggagagggacgagacTGCC
CGGGAGGCAGCTGCACGAGAAACgtacgaagagggaggcgtaCATGGCCT
GGTTCACGCTGAGCCTTTCTCAGAGACAAGCTACAGGAACAAGCGTGGCG
AGGAATGCCACTTGCTGCTCTTTGTGATGGAGGTCTCAGAGCTGCTTCCG
CAGTGGCCGGAATCATCTGTGCGGCGACGTCGGCTATGCTCCCTCAGCGA
AGCAATCGACATATGTGGAAAAGAAGAACACCGCGCTGCACTGCTAAGTA
TCAAGCTGCAAGGTTTGAACACATTGTTCACCGGCGAAGAAagccaggag
gaagactcGCGACGTGAAGGACATCTTGAATTGCATGGTGCAGGCAGCCA
CCACCCGAATGGGTCCGATTCTATACCCGACCAGCCTTTATTTTCGAGTG
AGGCAAGCGATGGTTGTGACAGTGCCGAATTTCCAGGGCTAATTTTATCT
ACGCGGAGGCCTGGTCTCGAACGTGGCAAAACAGATCGAGATGTTGAGCT
AATCGGGAAGGTTGAGTCATAGGAAGGGTCCGAGTAGGCCTTGATTATCG
ATGTATGAGACCTCTGGACTAGGAGCTGAGCATATTAGCACGCTAACTAC
TAAAGGTGCGGGGGTAGACTGAGAGCAAGTTGACGGATGTGCTGAGCTGA
AAATTGATTGAAAACAAAACCTACGATACCTTTTCTTATAATAGATCAGA
TTTCAAGGCGAATGATGTGGCTTAAACTTCAAATCTTTACCTGAGATATT
TTTAATTTTATCACGTCAGTGTCATGTAACTATGATGATGACCCGTAATG
TCAATTTGCAAGACGTCACATCACGCAAGCAAATATGCATGCTGCTTGAG
GACCGTTTGAAAATCCAATTgtctctctgcctcccgacTAAGCA
back to top

Coding sequence (CDS) from alignment at CM002461.1:522875..524818+

>rna3483 ID=rna3483|Name=rna3483|organism=Nannochloropsis gaditana|type=CDS|length=1416bp|location=Sequence derived from alignment at CM002461.1:522875..524818+ (Nannochloropsis gaditana)
ATGTTGGTTGCGCGACCTGTCTCGACGACTCCACGCATGGGCCGTCAATT
GCAACGGTACAATGGCAACGTCCGCCTCATCACTGGATGCATTCCGCTGA
CTTCAGACGGGAACGTGGTCCTAATCAGCTCCAGAACGGGAGACTGGATC
CTCCCCAAGGGGGgttgggagagggacgagacTGCCCGGGAGGCAGCTGC
ACGAGAAACgtacgaagagggaggcgtaCATGGCCTGGTTCACGCTGAGC
CTTTCTCAGAGACAAGCTACAGGAACAAGCGTGGCGAGGAATGCCACTTG
CTGCTCTTTGTGATGGAGGTCTCAGAGCTGCTTCCGCAGTGGCCGGAATC
ATCTGTGCGGCGACGTCGGCTATGCTCCCTCAGCGAAGCAATCGACATAT
GTGGAAAAGAAGAACACCGCGCTGCACTGCTAAGTATCAAGCTGCAAGGT
TTGAACACATTGTTCACCGGCGAAGAAagccaggaggaagactcGCGACG
TGAAGGACATCTTGAATTGCATGGTGCAGGCAGCCACCACCCGAATGGGT
CCGATTCTATACCCGACCAGCCTTTATTTTCGAGTGAGGCAAGCGATGGT
TGTGACAGTGCCGAATTTCCAGGGCTAATTTTATCTACGCGGAGGCCTGG
TCTCGAACGTGGCAAAACAGATCGAGATGTTGAGCTAATCGGGAAGGTTG
AGTCATAGATGTTGGTTGCGCGACCTGTCTCGACGACTCCACGCATGGGC
CGTCAATTGCAACGGTACAATGGCAACGTCCGCCTCATCACTGGATGCAT
TCCGCTGACTTCAGACGGGAACGTGGTCCTAATCAGCTCCAGAACGGGAG
ACTGGATCCTCCCCAAGGGGGgttgggagagggacgagacTGCCCGGGAG
GCAGCTGCACGAGAAACgtacgaagagggaggcgtaCATGGCCTGGTTCA
CGCTGAGCCTTTCTCAGAGACAAGCTACAGGAACAAGCGTGGCGAGGAAT
GCCACTTGCTGCTCTTTGTGATGGAGGTCTCAGAGCTGCTTCCGCAGTGG
CCGGAATCATCTGTGCGGCGACGTCGGCTATGCTCCCTCAGCGAAGCAAT
CGACATATGTGGAAAAGAAGAACACCGCGCTGCACTGCTAAGTATCAAGC
TGCAAGGTTTGAACACATTGTTCACCGGCGAAGAAagccaggaggaagac
tcGCGACGTGAAGGACATCTTGAATTGCATGGTGCAGGCAGCCACCACCC
GAATGGGTCCGATTCTATACCCGACCAGCCTTTATTTTCGAGTGAGGCAA
GCGATGGTTGTGACAGTGCCGAATTTCCAGGGCTAATTTTATCTACGCGG
AGGCCTGGTCTCGAACGTGGCAAAACAGATCGAGATGTTGAGCTAATCGG
GAAGGTTGAGTCATAG
back to top
Synonyms
Publications