EWM27196.1, cds3474 (CDS) Nannochloropsis gaditana

Overview
NameEWM27196.1
Unique Namecds3474
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:523527..523612 +
Alignment locationCM002461.1:523825..524446 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27196.1
Productnudix hydrolase 13
Orig transcript idgnl|cribi|Naga_100010g37.6166.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:523527..523612 +
CM002461.1supercontigCM002461.1:523825..524446 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009056catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR020084NUDIX_hydrolase_CS
IPR015797NUDIX_hydrolase_dom-like
IPR000086NUDIX_hydrolase_dom
Homology
BLAST of EWM27196.1 vs. NCBI_GenBank
Match: gi|585109376|gb|EWM27196.1| (nudix hydrolase 13 [Nannochloropsis gaditana])

HSP 1 Score: 477.248 bits (1227), Expect = 2.357e-170
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:    1 MLVARPVSTTPRMGRQLQRYNGNVRLITGCIPLTSDGNVVLISSRTGDWILPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEECHLLLFVMEVSELLPQWPESSVRRRRLCSLSEAIDICGKEEHRAALLSIKLQGLNTLFTGEESQEEDSRREGHLELHGAGSHHPNGSDSIPDQPLFSSEASDGCDSAEFPGLILSTRRPGLERGKTDRDVELIGKVES 235
            MLVARPVSTTPRMGRQLQRYNGNVRLITGCIPLTSDGNVVLISSRTGDWILPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEECHLLLFVMEVSELLPQWPESSVRRRRLCSLSEAIDICGKEEHRAALLSIKLQGLNTLFTGEESQEEDSRREGHLELHGAGSHHPNGSDSIPDQPLFSSEASDGCDSAEFPGLILSTRRPGLERGKTDRDVELIGKVES
Sbjct:    1 MLVARPVSTTPRMGRQLQRYNGNVRLITGCIPLTSDGNVVLISSRTGDWILPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEECHLLLFVMEVSELLPQWPESSVRRRRLCSLSEAIDICGKEEHRAALLSIKLQGLNTLFTGEESQEEDSRREGHLELHGAGSHHPNGSDSIPDQPLFSSEASDGCDSAEFPGLILSTRRPGLERGKTDRDVELIGKVES 235          
BLAST of EWM27196.1 vs. NCBI_GenBank
Match: gi|1191647003|gb|OTF98976.1| (putative NUDIX hydrolase domain-like protein [Helianthus annuus])

HSP 1 Score: 112.849 bits (281), Expect = 3.574e-27
Identity = 63/151 (41.72%), Postives = 85/151 (56.29%), Query Frame = 0
Query:    8 STTPRMGRQLQRYNGNVRLITGCIP--LTSDGN-----VVLISS-RTGDWILPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEE-------CHLLLFVMEVSELLPQWPESSVRRRRLCSLSEAIDICGKEEHRAAL 143
            S   R GR LQRY+ N+RL++GCIP  LT   +     V+++SS    D + PKGGWE DET  EAA RE  EE GV G++      E  +R+K  +E       C   +FV+EV+E L  WPE + R R+  ++ EA  +C  E  R AL
Sbjct:    3 SIVARTGRHLQRYDNNLRLVSGCIPFRLTKPKDQDKIEVLMVSSPNRDDMVFPKGGWESDETVEEAACREALEEAGVRGVIKGNSLGEWEFRSKSKQEACSEEGGCKGYMFVLEVTEELETWPEQNNRNRKWVTIEEAFVVCRYEWMRNAL 153          
BLAST of EWM27196.1 vs. NCBI_GenBank
Match: gi|694325052|ref|XP_009353496.1| (PREDICTED: nudix hydrolase 12, mitochondrial-like isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 111.694 bits (278), Expect = 9.090e-27
Identity = 77/198 (38.89%), Postives = 105/198 (53.03%), Query Frame = 0
Query:   10 TPRMGRQLQRYNGNVRLITGCIPL---TSDGN------VVLISSRT-GDWILPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEE-------CHLLLFVMEVSELLPQWPESSVRRRRLCSLSEAIDICGKEEHRAALLSIKLQGLNTLFTGEESQEEDSRRE-GHLELHG---AGSHHPNGSDS 186
            T R GRQ QRY+G++RL++GCIP     SDG+      V++ISS +  D + PKGGWE DET  EAA RE  EE GV G++   P     YR+K  ++       C   +F MEV+E L  WPE +   R+  ++ EA   C  +  R A     L+   T  +  E++E D+R+E   L L      GS HP  S S
Sbjct:    5 TARTGRQRQRYDGHLRLVSGCIPYRFEKSDGSIEQKLLVLMISSPSRDDLVFPKGGWEDDETMSEAACREALEEAGVKGVLGDNPLGAWEYRSKSKQKSCSLQGGCKGFMFAMEVTEELDSWPEQANYGRKWLTIEEAFRSCRYDWMREA-----LRKFATALS--ETRENDTRKELDELPLRPISEIGSEHPMSSSS 195          
BLAST of EWM27196.1 vs. NCBI_GenBank
Match: gi|299472983|emb|CBN77384.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 108.997 bits (271), Expect = 2.678e-26
Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = 0
Query:   12 RMGRQLQRYNGNVRLITGCIPLTSDGNVVLISS-RTGDWILPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEECHLLLFVMEVSELLPQWPE 116
            R GR+  RY+G+ RL+ GC+P+T DG +VLI S +  DWILPKGGW+ DETA EAA RE YEE GV GLV A+        + RG +    +F + VS++L +WPE
Sbjct:    5 RQGREKCRYDGDTRLVAGCLPVTPDGRLVLIGSVKHTDWILPKGGWDTDETAAEAAVREAYEEAGVKGLVTAD-LGPHEIVSSRGNKSRAAMFALLVSDVLDEWPE 109          
BLAST of EWM27196.1 vs. NCBI_GenBank
Match: gi|694423450|ref|XP_009339526.1| (PREDICTED: nudix hydrolase 12, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 110.538 bits (275), Expect = 2.933e-26
Identity = 76/198 (38.38%), Postives = 104/198 (52.53%), Query Frame = 0
Query:   10 TPRMGRQLQRYNGNVRLITGCIPL---TSDGN------VVLISSRT-GDWILPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEE-------CHLLLFVMEVSELLPQWPESSVRRRRLCSLSEAIDICGKEEHRAALLSIKLQGLNTLFTGEESQEEDSRRE-GHLELH---GAGSHHPNGSDS 186
            T R GRQ QRY+G++RL++GCIP     SDG+      V++ISS +  D + PKGGWE DET  EAA RE  EE GV G++   P     +R+K  ++       C   +F MEV+E L  WPE +    +  ++ EA   C  +  R A     LQ   T  +  E++E D+R+E   L L      GS HP  S S
Sbjct:    5 TARTGRQRQRYDGHLRLVSGCIPYRFEKSDGSIEQKLLVLMISSPSRDDLVFPKGGWEDDETMSEAACREALEEAGVKGVLGDNPLGAWEFRSKSKQKSCSLQGGCKGFMFAMEVTEELDSWPEQANYVSKWLTIEEAFRSCRYDWMREA-----LQKFATALS--ETRENDTRKELDELPLRPISEIGSEHPMSSSS 195          
BLAST of EWM27196.1 vs. NCBI_GenBank
Match: gi|694359521|ref|XP_009359855.1| (PREDICTED: nudix hydrolase 12, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 109.768 bits (273), Expect = 1.038e-25
Identity = 76/205 (37.07%), Postives = 103/205 (50.24%), Query Frame = 0
Query:   10 TPRMGRQLQRYNGNVRLITGCIPLT-------SDGN------VVLISS-RTGDWILPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEE-------CHLLLFVMEVSELLPQWPESSVRRRRLCSLSEAIDICGKEEHRAALLSIKLQGLNTLFTGEESQEEDSRREGHLE------LHGAGSHHPNGSDSI 187
            T R GRQ QRY+G++RL++GCIP          +GN      V++ISS    D + PKGGWE DET REAA RE  EE GV G++   P     +R+K  +        C   +F MEV+E L  WPE +   R+  ++ EA   C  +  R AL  +       L T  ES+E ++R E  LE      +   GS HP  S  +
Sbjct:    5 TARTGRQRQRYDGHLRLVSGCIPYKFEKIAGGCNGNIEQKLLVLMISSPNRDDLVFPKGGWEDDETMREAACREALEEAGVKGVLRDNPLGVWEFRSKSKQNSCNLQGGCKGFMFAMEVTEELDSWPEQANYGRKWLTVEEAFRFCRYDWMREALGKL-------LTTLSESRENNTRNE--LEELPLRPISEIGSEHPMSSSPV 200          
BLAST of EWM27196.1 vs. NCBI_GenBank
Match: gi|727153851|emb|CEG64821.1| (hypothetical protein RMATCC62417_01730 [Rhizopus microsporus] >gi|1178067331|gb|ORE21735.1| hypothetical protein BCV71DRAFT_274378 [Rhizopus microsporus])

HSP 1 Score: 106.686 bits (265), Expect = 2.014e-25
Identity = 59/142 (41.55%), Postives = 80/142 (56.34%), Query Frame = 0
Query:    9 TTPRMGRQLQRYNGN-VRLITGCIPLTSDGNVVLI---SSRTGDWILPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEECHLLLFVMEVSELLPQWPESSVRRRRLCSLSEAIDIC-GKEEHRAALLS 145
            T PR+GRQ Q Y+ N +R I+G I +    N VLI   S     W+LPKGGWE DET  EAA RETYEEGGV G+V     +   Y      + H+  + +EV  +  +WPE   R+R+ C+  EA+ +   K   + ALL+
Sbjct:    8 TEPRVGRQNQVYDHNDIRQISGSIAVDPKTNKVLIISSSKYENVWVLPKGGWENDETREEAAKRETYEEGGVKGVVKGFVGNFVDYDYMGNPKSHVWFYELEVQHIYERWPEEDFRQRKWCTFEEAMQLLRFKPYMQKALLA 149          
BLAST of EWM27196.1 vs. NCBI_GenBank
Match: gi|669163502|ref|XP_008617313.1| (hypothetical protein SDRG_13008 [Saprolegnia diclina VS20] >gi|530731097|gb|EQC29339.1| hypothetical protein SDRG_13008 [Saprolegnia diclina VS20])

HSP 1 Score: 106.301 bits (264), Expect = 3.084e-25
Identity = 62/147 (42.18%), Postives = 82/147 (55.78%), Query Frame = 0
Query:    1 MLVARPVSTTPRMGRQLQRYNGNVRLITGCIPLTSDGNVVLI--SSRTGD-WILPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEECHLLLFVMEVSELLPQWPESSVRRRRLCSLSEAIDICGKEEHRAALL 144
            M VA   + T R GR LQRY+G+ RL+   +PL+ DG  VL+  SS+  D WILPKGGW+ DE+A   AARE  EE GVHG +  E      Y   +G+ C L  F M V+    +W E+  RRR   SL+ A     +    A++L
Sbjct:    1 MAVADRCTMTSRTGRDLQRYDGHARLVVCAVPLSLDGARVLLISSSKHADQWILPKGGWDADESAEACAARELAEEAGVHGDILGE-LGAVDYETAKGKPCRLHGFGMRVTREFEEWSEAVSRRREWVSLATATARLARRPELASML 146          
BLAST of EWM27196.1 vs. NCBI_GenBank
Match: gi|1191668915|gb|OTG20882.1| (putative nudix hydrolase [Helianthus annuus])

HSP 1 Score: 108.612 bits (270), Expect = 3.295e-25
Identity = 61/151 (40.40%), Postives = 82/151 (54.30%), Query Frame = 0
Query:    8 STTPRMGRQLQRYNGNVRLITGCIPL----TSDGN---VVLISS-RTGDWILPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEE-------CHLLLFVMEVSELLPQWPESSVRRRRLCSLSEAIDICGKEEHRAAL 143
            S   R GR LQRY+ N+RL++GCIP     T D N   V+++SS    D + PKGGWE DET  EAA RE  EE GV G++         +R+K  +E       C   +F ++V+E L  WPE + R R+   + EA  +C  E  R AL
Sbjct:    3 SIVARTGRHLQRYDNNLRLVSGCIPYRLDKTKDENRIEVLMVSSPNRDDMVFPKGGWESDETVEEAACREALEEAGVRGILDGNALGVWEFRSKSKQEACSEEGGCKGYMFALQVTEELETWPEKNNRNRKWVVIEEAFVLCRYEWMRNAL 153          
BLAST of EWM27196.1 vs. NCBI_GenBank
Match: gi|1032648524|gb|OAQ29817.1| (hypothetical protein K457DRAFT_111667 [Mortierella elongata AG-77])

HSP 1 Score: 105.531 bits (262), Expect = 4.538e-25
Identity = 61/142 (42.96%), Postives = 77/142 (54.23%), Query Frame = 0
Query:    8 STTPRMGRQLQRYNGNVRLITGCIPLTSDGNVVLI---SSRTGDWILPKGGWERDETAREAAARETYEEGGVHG--LVHAEPFSETSYRNKRGE-ECHLLLFVMEVSELLPQWPESSVRRRRLCSLSEAIDICGKEEHRAAL 143
            S   + GRQ Q Y+   RL+ GC+P+   G  VL+   S   G+W+LPKGGWE DET  EAAARET+EE G  G  + H   + E  Y  K G  E   + F MEV  +  +WPE   R RR  +  EA  I  K+  R AL
Sbjct:    3 SQYAKEGRQNQLYDEGARLVAGCVPIDKHGRRVLLVASSKNEGEWVLPKGGWENDETQEEAAARETWEEAGAIGRIVAHLGEY-EHKYNKKTGHAESIFIFFEMEVERIEEKWPEMKKRERRWFTYEEAKQIVSKKVMRKAL 143          
The following BLAST results are available for this feature:
BLAST of EWM27196.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109376|gb|EWM27196.1|2.357e-170100.00nudix hydrolase 13 [Nannochloropsis gaditana][more]
gi|1191647003|gb|OTF98976.1|3.574e-2741.72putative NUDIX hydrolase domain-like protein [Heli... [more]
gi|694325052|ref|XP_009353496.1|9.090e-2738.89PREDICTED: nudix hydrolase 12, mitochondrial-like ... [more]
gi|299472983|emb|CBN77384.1|2.678e-2650.94conserved unknown protein [Ectocarpus siliculosus][more]
gi|694423450|ref|XP_009339526.1|2.933e-2638.38PREDICTED: nudix hydrolase 12, mitochondrial-like ... [more]
gi|694359521|ref|XP_009359855.1|1.038e-2537.07PREDICTED: nudix hydrolase 12, mitochondrial-like ... [more]
gi|727153851|emb|CEG64821.1|2.014e-2541.55hypothetical protein RMATCC62417_01730 [Rhizopus m... [more]
gi|669163502|ref|XP_008617313.1|3.084e-2542.18hypothetical protein SDRG_13008 [Saprolegnia dicli... [more]
gi|1191668915|gb|OTG20882.1|3.295e-2540.40putative nudix hydrolase [Helianthus annuus][more]
gi|1032648524|gb|OAQ29817.1|4.538e-2542.96hypothetical protein K457DRAFT_111667 [Mortierella... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3483rna3483Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications