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Properties
| Property Name | Value |
|---|
| Product | tubby-like protein |
| Orig transcript id | gnl|cribi|Naga_100010g35.6197.mrna |
| Orig protein id | gnl|cribi|Naga_100010g35.6197 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:520870..522776 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3482 ID=rna3482|Name=rna3482|organism=Nannochloropsis gaditana|type=mRNA|length=1617bp
GCTAGGGTTTGGGTCGAATGAGAAAAGTTCTTACTCATAACTTGTATCTC
GTTAGTAGTTAGTCCCTCGAAAGGAAGCTTTGACTTCGAACATGATTCTC
CAAGGGCAAGTACTGATCCTCCTTACCACTTATCTCTTTCCAAACTAATC
AAAAAGATTATCTTTGTCGGCAGGTTCATAAGGTAACGCATTCTGCAACC
CTCACGGGAAGCGTAAAATGGCTACACAGCATTTAGCGTCAGCATCCGGC
GAATTGGAAGGGCTTGTGCAGAGCACGGTAAACCTTTTTGGCGGGGTGGC
AGACAAGTTATGGCCGGCCAAAAGTAGGAACCAAGAAAAGCAAGCAGAAA
TTGGAAAAGTTGGAGCTTTGAATAGTGAAGCGTTTGATTCCAATTTTAAA
AAAGATATCAAGACATTCGAAGATCTTGATTTGCTGGAGAGTGGCCATGC
TCGTGAATACATAACAGAAGAATGCCTGCTTCCTTGTCCAACAGTGAAAA
AATGGTCGACTTGCAACGTTATCAAGAACGGAAAATCGACTTTTCGCATG
TACCTGGATGAGGCTCAACCCAGATTCGTCCTCAGCGCCAAGCGTGTAGG
GGACTCTTTTTTCATATCACAGTATGAATCATTTCCTGAAAGTATCAACG
GCGTGCCGGAGGTTTCTTCCTGTGCCGTCCTCCGGACGTGCTCGGAAGGA
TATTTCAAGCTTTTTCTCAACGGGTGCGAAGCGTGCGATAAGAAGGCAGA
CAAATATACGTGTGGTTCTGGCCATAGCTTTGACAATCGACAGCTTTTGG
CAGAGATCAATCATTCTGTCAAAAGGGTAAAAGAGGCAAATGCAGATATG
CGTTGTTTGTCAGTCAAATTACCCGAGGTGCACGAGGACCAGCAGACGAG
GGATGTGTGGTGGTAAGTAATTTATGCGAAGAAGTTGAATCATCCAGTAG
AAATGTGAGCGCCAAATATCATACAGGCTGGTATAATGTCGAGAATTCGT
AGTACTCTTTGCAAATGGCTGCTTCCAATGAGGTCTTGGGCCTGGATTGC
TCCTCTTCAGAGCTTACATATCTCCTAACTGTTGTCCTTTATCAAAACAC
ACCATTACATCAGCCCGCGTATGGAGCAAGCACGTAGATCCAATAATGCA
GAACTGAAAACAAGACATTTCCGTTTGCACAACAAGCTGCCTGAGTGGAA
CGAAGCTCTTCAAAGCTTGGTACTGCGCTTCAATAAAGGTCGCGTGCTGG
CGCCATCAGCAAAGAATTTTTTGATCTGTTTAGACGGTCAGGATAATGGA
GAGGGCGTGCTCCAGTTTGGCAAAACACGGAAAAGGCGTTATGCCTTAGA
TTTTCGCCATCCCGTCAGTCCCCTTCAAGCTTTCGGTATATGTCTATCGT
TTTTTAATTGGAACGTATAGATAAGGGATTCCTGCATATGTAGTGTATTT
ACATCCTACGTAAAGTAGAATCGCTGAGAAGCACAAATCTACTAGGCCGT
TGACATGCACATTGAAAGAAACAAACAATGTACGAAGACTCACGTAAAAA
TCACGGACGGAAGGCAAAGTTTCTGCTTTCTGCTTGACGCACAGTGTAGG
CGGGCGCCAGACTCGGG back to topprotein sequence of rna3482 >rna3482-protein ID=rna3482-protein|Name=rna3482|organism=Nannochloropsis gaditana|type=polypeptide|length=333bp
MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGA
LNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCN
VIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVS
SCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHS
VKRVKEANADMRCLSVKLPEVHEDQQTRDVWCPRMEQARRSNNAELKTRH
FRLHNKLPEWNEALQSLVLRFNKGRVLAPSAKNFLICLDGQDNGEGVLQF
GKTRKRRYALDFRHPVSPLQAFGICLSFFNWNV back to topmRNA from alignment at CM002461.1:520870..522776+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3482 ID=rna3482|Name=rna3482|organism=Nannochloropsis gaditana|type=mRNA|length=1907bp|location=Sequence derived from alignment at CM002461.1:520870..522776+ (Nannochloropsis gaditana)
GCTAGGGTTTGGGTCGAATGAGAAAAGTTCTTACTCATAACTTGTATCTC
GTTAGTAGTTAGTCCCTCGAAAGGAAGCTTTGACTTCGAACATGATTCTC
CAAGGGCAAGTACTGATCCTCCTTACCACTTATCTCTTTCCAAACTAATC
AAAAAGATTATCTTTGTCGGCAGGTTCATAAGGTAACGCATTCTGCAACC
CTCACGGGAAGCGTAAAATGGCTACACAGCATTTAGCGTCAGCATCCGGC
GAATTGGAAGGGCTTGTGCAGAGCACGGTAAACCTTTTTGGCGGGGTGGC
AGACAAGTTATGGCCGGCCAAAAGTAGGAACCAAGAAAAGCAAGCAGAAA
TTGGAAAAGTTGGAGCTTTGAATAGTGAAGCGTTTGATTCCAATTTTAAA
AAAGATATCAAGACATTCGAAGATCTTGATTTGCTGGTAAGCTGCACAAT
GAGGGCTTGTCGCCGTTGCTTATATGCTCGAGTCATTTAAATATATAGAT
CATGCATGGTTTCTTCACGTAGTATACAACATTTCTTCATATATTGCAGG
AGAGTGGCCATGCTCGTGAATACATAACAGAAGAATGCCTGCTTCCTTGT
CCAACAGTGAAAAAATGGTCGACTTGCAACGTTATCAAGAACGGAAAATC
GACTTTTCGCATGTACCTGGATGAGGCTCAACCCAGATTCGTCCTCAGCG
CCAAGCGTGTAGGGGACTCTTTTTTCATATCACAGTATGAATCATTTCCT
GAAAGTATCAACGGCGTGCCGGAGGTTTCTTCCTGTGCCGTCCTCCGGAC
GTGCTCGGAAGGATATTTCAAGCTTTTTCTCAACGGGTGCGAAGCGTGCG
ATAAGAAGGCAGACAAATATACGTGTGGTTCTGGCCATAGCTTTGACAAT
CGACAGCTTTTGGCAGAGATCAATCATGTACGTACCAAAAAACAATGCAA
ATGTAAGACGAAGGATGCTGGACATATATCCAGTAATATCATCAATTCAG
AGGATGCGCTCAATTTGTGTCACCATCTATTAGTAAGGCTCGGTTCGCCT
TACATCTACTGACTTTTCTGAAATTTGTTCCTTTTCGCCTGCATGCATAT
ACAGTCTGTCAAAAGGGTAAAAGAGGCAAATGCAGATATGCGTTGTTTGT
CAGTCAAATTACCCGAGGTGCACGAGGACCAGCAGACGAGGGATGTGTGG
TGGTAAGTAATTTATGCGAAGAAGTTGAATCATCCAGTAGAAATGTGAGC
GCCAAATATCATACAGGCTGGTATAATGTCGAGAATTCGTAGTACTCTTT
GCAAATGGCTGCTTCCAATGAGGTCTTGGGCCTGGATTGCTCCTCTTCAG
AGCTTACATATCTCCTAACTGTTGTCCTTTATCAAAACACACCATTACAT
CAGCCCGCGTATGGAGCAAGCACGTAGATCCAATAATGCAGAACTGAAAA
CAAGACATTTCCGTTTGCACAACAAGCTGCCTGAGTGGAACGAAGCTCTT
CAAAGCTTGGTACTGCGCTTCAATAAAGGTCGCGTGCTGGCGCCATCAGC
AAAGAATTTTTTGATCTGTTTAGACGGTCAGGATAATGGAGAGGGCGTGC
TCCAGTTTGGCAAAACACGGAAAAGGCGTTATGCCTTAGATTTTCGCCAT
CCCGTCAGTCCCCTTCAAGCTTTCGGTATATGTCTATCGTTTTTTAATTG
GAACGTATAGATAAGGGATTCCTGCATATGTAGTGTATTTACATCCTACG
TAAAGTAGAATCGCTGAGAAGCACAAATCTACTAGGCCGTTGACATGCAC
ATTGAAAGAAACAAACAATGTACGAAGACTCACGTAAAAATCACGGACGG
AAGGCAAAGTTTCTGCTTTCTGCTTGACGCACAGTGTAGGCGGGCGCCAG
ACTCGGG back to topCoding sequence (CDS) from alignment at CM002461.1:520870..522776+ >rna3482 ID=rna3482|Name=rna3482|organism=Nannochloropsis gaditana|type=CDS|length=4008bp|location=Sequence derived from alignment at CM002461.1:520870..522776+ (Nannochloropsis gaditana)
ATGGCTACACAGCATTTAGCGTCAGCATCCGGCGAATTGGAAGGGCTTGT
GCAGAGCACGGTAAACCTTTTTGGCGGGGTGGCAGACAAGTTATGGCCGG
CCAAAAGTAGGAACCAAGAAAAGCAAGCAGAAATTGGAAAAGTTGGAGCT
TTGAATAGTGAAGCGTTTGATTCCAATTTTAAAAAAGATATCAAGACATT
CGAAGATCTTGATTTGCTGGAGAGTGGCCATGCTCGTGAATACATAACAG
AAGAATGCCTGCTTCCTTGTCCAACAGTGAAAAAATGGTCGACTTGCAAC
GTTATCAAGAACGGAAAATCGACTTTTCGCATGTACCTGGATGAGGCTCA
ACCCAGATTCGTCCTCAGCGCCAAGCGTGTAGGGGACTCTTTTTTCATAT
CACAGTATGAATCATTTCCTGAAAGTATCAACGGCGTGCCGGAGGTTTCT
TCCTGTGCCGTCCTCCGGACGTGCTCGGAAGGATATTTCAAGCTTTTTCT
CAACGGGTGCGAAGCGTGCGATAAGAAGGCAGACAAATATACGTGTGGTT
CTGGCCATAGCTTTGACAATCGACAGCTTTTGGCAGAGATCAATCATTCT
GTCAAAAGGGTAAAAGAGGCAAATGCAGATATGCGTTGTTTGTCAGTCAA
ATTACCCGAGGTGCACGAGGACCAGCAGACGAGGGATGTGTGGTGCCCGC
GTATGGAGCAAGCACGTAGATCCAATAATGCAGAACTGAAAACAAGACAT
TTCCGTTTGCACAACAAGCTGCCTGAGTGGAACGAAGCTCTTCAAAGCTT
GGTACTGCGCTTCAATAAAGGTCGCGTGCTGGCGCCATCAGCAAAGAATT
TTTTGATCTGTTTAGACGGTCAGGATAATGGAGAGGGCGTGCTCCAGTTT
GGCAAAACACGGAAAAGGCGTTATGCCTTAGATTTTCGCCATCCCGTCAG
TCCCCTTCAAGCTTTCGGTATATGTCTATCGTTTTTTAATTGGAACGTAT
AGATGGCTACACAGCATTTAGCGTCAGCATCCGGCGAATTGGAAGGGCTT
GTGCAGAGCACGGTAAACCTTTTTGGCGGGGTGGCAGACAAGTTATGGCC
GGCCAAAAGTAGGAACCAAGAAAAGCAAGCAGAAATTGGAAAAGTTGGAG
CTTTGAATAGTGAAGCGTTTGATTCCAATTTTAAAAAAGATATCAAGACA
TTCGAAGATCTTGATTTGCTGGAGAGTGGCCATGCTCGTGAATACATAAC
AGAAGAATGCCTGCTTCCTTGTCCAACAGTGAAAAAATGGTCGACTTGCA
ACGTTATCAAGAACGGAAAATCGACTTTTCGCATGTACCTGGATGAGGCT
CAACCCAGATTCGTCCTCAGCGCCAAGCGTGTAGGGGACTCTTTTTTCAT
ATCACAGTATGAATCATTTCCTGAAAGTATCAACGGCGTGCCGGAGGTTT
CTTCCTGTGCCGTCCTCCGGACGTGCTCGGAAGGATATTTCAAGCTTTTT
CTCAACGGGTGCGAAGCGTGCGATAAGAAGGCAGACAAATATACGTGTGG
TTCTGGCCATAGCTTTGACAATCGACAGCTTTTGGCAGAGATCAATCATT
CTGTCAAAAGGGTAAAAGAGGCAAATGCAGATATGCGTTGTTTGTCAGTC
AAATTACCCGAGGTGCACGAGGACCAGCAGACGAGGGATGTGTGGTGCCC
GCGTATGGAGCAAGCACGTAGATCCAATAATGCAGAACTGAAAACAAGAC
ATTTCCGTTTGCACAACAAGCTGCCTGAGTGGAACGAAGCTCTTCAAAGC
TTGGTACTGCGCTTCAATAAAGGTCGCGTGCTGGCGCCATCAGCAAAGAA
TTTTTTGATCTGTTTAGACGGTCAGGATAATGGAGAGGGCGTGCTCCAGT
TTGGCAAAACACGGAAAAGGCGTTATGCCTTAGATTTTCGCCATCCCGTC
AGTCCCCTTCAAGCTTTCGGTATATGTCTATCGTTTTTTAATTGGAACGT
ATAGATGGCTACACAGCATTTAGCGTCAGCATCCGGCGAATTGGAAGGGC
TTGTGCAGAGCACGGTAAACCTTTTTGGCGGGGTGGCAGACAAGTTATGG
CCGGCCAAAAGTAGGAACCAAGAAAAGCAAGCAGAAATTGGAAAAGTTGG
AGCTTTGAATAGTGAAGCGTTTGATTCCAATTTTAAAAAAGATATCAAGA
CATTCGAAGATCTTGATTTGCTGGAGAGTGGCCATGCTCGTGAATACATA
ACAGAAGAATGCCTGCTTCCTTGTCCAACAGTGAAAAAATGGTCGACTTG
CAACGTTATCAAGAACGGAAAATCGACTTTTCGCATGTACCTGGATGAGG
CTCAACCCAGATTCGTCCTCAGCGCCAAGCGTGTAGGGGACTCTTTTTTC
ATATCACAGTATGAATCATTTCCTGAAAGTATCAACGGCGTGCCGGAGGT
TTCTTCCTGTGCCGTCCTCCGGACGTGCTCGGAAGGATATTTCAAGCTTT
TTCTCAACGGGTGCGAAGCGTGCGATAAGAAGGCAGACAAATATACGTGT
GGTTCTGGCCATAGCTTTGACAATCGACAGCTTTTGGCAGAGATCAATCA
TTCTGTCAAAAGGGTAAAAGAGGCAAATGCAGATATGCGTTGTTTGTCAG
TCAAATTACCCGAGGTGCACGAGGACCAGCAGACGAGGGATGTGTGGTGC
CCGCGTATGGAGCAAGCACGTAGATCCAATAATGCAGAACTGAAAACAAG
ACATTTCCGTTTGCACAACAAGCTGCCTGAGTGGAACGAAGCTCTTCAAA
GCTTGGTACTGCGCTTCAATAAAGGTCGCGTGCTGGCGCCATCAGCAAAG
AATTTTTTGATCTGTTTAGACGGTCAGGATAATGGAGAGGGCGTGCTCCA
GTTTGGCAAAACACGGAAAAGGCGTTATGCCTTAGATTTTCGCCATCCCG
TCAGTCCCCTTCAAGCTTTCGGTATATGTCTATCGTTTTTTAATTGGAAC
GTATAGATGGCTACACAGCATTTAGCGTCAGCATCCGGCGAATTGGAAGG
GCTTGTGCAGAGCACGGTAAACCTTTTTGGCGGGGTGGCAGACAAGTTAT
GGCCGGCCAAAAGTAGGAACCAAGAAAAGCAAGCAGAAATTGGAAAAGTT
GGAGCTTTGAATAGTGAAGCGTTTGATTCCAATTTTAAAAAAGATATCAA
GACATTCGAAGATCTTGATTTGCTGGAGAGTGGCCATGCTCGTGAATACA
TAACAGAAGAATGCCTGCTTCCTTGTCCAACAGTGAAAAAATGGTCGACT
TGCAACGTTATCAAGAACGGAAAATCGACTTTTCGCATGTACCTGGATGA
GGCTCAACCCAGATTCGTCCTCAGCGCCAAGCGTGTAGGGGACTCTTTTT
TCATATCACAGTATGAATCATTTCCTGAAAGTATCAACGGCGTGCCGGAG
GTTTCTTCCTGTGCCGTCCTCCGGACGTGCTCGGAAGGATATTTCAAGCT
TTTTCTCAACGGGTGCGAAGCGTGCGATAAGAAGGCAGACAAATATACGT
GTGGTTCTGGCCATAGCTTTGACAATCGACAGCTTTTGGCAGAGATCAAT
CATTCTGTCAAAAGGGTAAAAGAGGCAAATGCAGATATGCGTTGTTTGTC
AGTCAAATTACCCGAGGTGCACGAGGACCAGCAGACGAGGGATGTGTGGT
GCCCGCGTATGGAGCAAGCACGTAGATCCAATAATGCAGAACTGAAAACA
AGACATTTCCGTTTGCACAACAAGCTGCCTGAGTGGAACGAAGCTCTTCA
AAGCTTGGTACTGCGCTTCAATAAAGGTCGCGTGCTGGCGCCATCAGCAA
AGAATTTTTTGATCTGTTTAGACGGTCAGGATAATGGAGAGGGCGTGCTC
CAGTTTGGCAAAACACGGAAAAGGCGTTATGCCTTAGATTTTCGCCATCC
CGTCAGTCCCCTTCAAGCTTTCGGTATATGTCTATCGTTTTTTAATTGGA
ACGTATAG back to top
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