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Properties
| Property Name | Value |
|---|
| Product | tubby-like protein |
| Orig transcript id | gnl|cribi|Naga_100010g35.6198.mrna |
| Orig protein id | gnl|cribi|Naga_100010g35.6198 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:520870..522776 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3481 ID=rna3481|Name=rna3481|organism=Nannochloropsis gaditana|type=mRNA|length=3147bp
CGGCAGGCGGCGTGCTAGAAGAACTAAATCCTTGTAAACATTTCGTCATA
CTCCGTCACATTCCGGTACAAATACCACAGCATTTCTGTCATGGAAGCTT
CGCGGCGTTTGTCGCGATTGGTGAGGCACCTGTCATCGAACTGCAGGTCA
TCAACAAGGACTTCCGATTCTACTTCCCTATCAATTGCTTTTTTCACGAG
CTTACGGGAACAATTTCCGCCTACATATAGCCAGACTGAGCACATATATC
GACTGCGTAGCATCTTGGTGCCCTTTTTGAACCATGTAGAAAGTGAGACA
CATCTCCAGTCTTGGCCACCGCAAGAAATGCAGATCCTGTTATCTGTTCT
TCGTCAAACTCTTGACACATCCACCAGTCATGATACTGTCAGCGTTTCAC
AGGCCACGCTTGAAATATTTTCGAACTGCTCTGAAATATTGTTGCGATGG
GCTGCTGTAAGCATAGGTCAAAACTCATTTTTGACGAGAGACGTGGTGCA
CTGCGCCGCCGACTTGGTAAGCGAGGCGGCATTCCAAGCTTTGGAAACGT
GGCTGGCCCGCAGAGGTGATCTTAAAGGCCAAATTTCCATACAAGCAAAA
GGGAATGATGTGCAGGCTGCAGGTCTGCTAGTGAGGGCGTTGCACCTTTG
GGTTTTCGCAGGACGGCTTGCCGCGTGTCCTTTGGCGGAAGTAGTAGACC
GCGTGAGCCGACTTTTCGAATGCCCGGGCTCTACGACAAGTTTGCTTGAA
AATTTTGGACCTTCTGTTTGGGAAAATATTTCGAAGGCACTAATACTAGA
ACTGGCGGAGGCAGAAGCGGTTGTCCTCACGGCCATGGACGTCGAATACC
GTCTGGTCCGAGTGTGTCTTCGGGCAGTGGCGAAGAGCCCGCATCTATGG
GTGTGGGCCATTTGGGCTAAAGTATTGGCTGAGCTCCCTGAAGATAACGA
GGAACTCGTCGATGGCGTCCTCTGGCCAGCTGATTCGGCGGGCTGGAGGC
GCGAGTCTGCTACTCAAGCGGTCCTGGAGGCTTCGGACGTGTGGTTAGAG
GAAGTAGCCGCTGGTGTCGGGGCCGTAGCACTTTTGTCCGGTCGATTTGA
GGACCACCGTTTATGGAAAAAGTTTCTGGGTTTGTTGAATGATGTGGTTG
GGCAAAAGAGGCGGTTGGACCGAGACCTGAAAAATATGGCCAACCCGGAA
GAGGCATGGCGCACGGCGAGCGTGGGCACCTCCCTTTCGTTGATACATCT
TGGAAACTCGCCATTCTGCTCGCGCTCTTCCGACAGCGAGTCAAATGTGT
GGGCAAAAGAGTGGGGGCTGTGTCTTAAGGCCTTATTATCGCTATGCCTC
GAGGAGACGACAGCAGCAGGGGATTTGGCAGATTTTTGCGGCGTAAATGA
TGGCCACGAGGACTATTCGCAGCGACCAAAGGTAACCGCACTTGCGACAA
TACTGTGTCCTGAATCTTTGGGTCCAACTGAGAACGAGATATGCAAGGCT
ATCACGGCGCTCTTTAAGGCCTCCGACGCACAAAGTCAAACGGAGGCATT
CTCATTCATGCGCGCCCGGACGCGCGAATTGGTACTGTCGAGCAGCGGTG
TCTCTTGGGAGCTGCTTCTTGTGTTGCGAATTTGCGCACTATTATGTGAC
CCGGGATCTGCGGCAATTAACTCATCAGAGCAAGCGATGTATGTCTTGGA
GCTGCTTCAAACCTCGGCTGCGCTGGCGATGACAGGACCCGCCTCATCGC
GACCGTCATCGTTACCGCTCTCGTCTGCGCAGGAACGTCTTAGTTCTTCG
CTGCATGCTACGCTTTTCCAAGCATCATATAGTTTGCAGACGGTTTTGGA
GAACGATGTTGAAGATGCATGGCTCAGAGAAGCTCGCGATTGGATTATGA
CTGCCCTAAGGAAGCGGAAAACATTTTCCGAGCGAACGCTTGGGGACTTG
GCAATTCTGGACTTGAATACAAGCGAAACAGACAGTATTCCCGCTGAATA
TTCAACTGCTTCCGCTATATCATCCCTCGAAGGAGATCGAGAAGGGTTTG
CAAGGAAACAAGAAGAACAAGGAATTCAGCAGCAGCAAGAACTATGCGAG
GAAAAGCGAGAGGCCTTTCTGACTCATTTGGCTTTCACCATGCTCATCAA
GACCCGACGACCAGCTTCCCACAAGTGTGTGGCGGAGCTGACGCGGTTCT
TGTTACAAAATGTGATTAGCCCTGATTTCCCTTCTGGAAATATAGCTCAA
AATCAGGTTCATGCTTGCCTGCGCGAACTTATCTCCAATCCCACTTTCTT
GGCTTATCGGGCGGGTCGCATGGAACACTGGGACGAGGCGCGCAGGCGTG
TAGTGGTAGCTTATGTCTGTGCTACCCTTGAGGCATATCCAAAGACTGTA
AAATTTAAGGACCTGACCTATTGTGTCGGAGCCTGTATTGGTGCGACTCC
AACTGAGGCAGATCCCGCCGGACAGGCCCTTGTTCTCTACTACACCTATC
TCATGCAAAAGCGGGCGCTCGCTTTGTGGAAATCAAGGGCAGTGGACGAA
GAAGGCACGAGCGTAATGGATATCGCAACCCGAAACCTAATAAGTCTACT
CTTTCAATCCCTTTTAATATGCCCTTTGACGGTTTTTGAAACCATACTTC
GAGACGTGGCCGAAAGCTTCGTACTCAAAGGTTTAATAGGCGCGCCTGAG
AAACGAGTGGCGGTGTTGGAACTGCTGAAACGCATTGTATTCGGTGAGGT
CGAACCTGTGAGACAAAATATCATAGCGAAATGGTACTTAGCTCTTTTGC
GAGATGAGGAGGATCTGCGGTTCCGAGAAACCACATATCGATCAGAGAAC
GCAAAAGAAAATGGTCCGGAAGGCGCATCGAACCTACCACTGGATGGAGC
GGTGCGATTTTGTGAGTCTATCCAATTTGGGGAAGAAAAATTGGATGAGG
GGCACATGTTATAATATGTGCACACGCACTCTTATAGTTGCGTACTTAAT
TATGTCGATGTACAAAACCACACGTGTTTGCATGACGCATTTTTTTTTCA
TTGATGGACTTTTCAGGAGGGAATGGGTTGCTTTATGCATTGACGCAAAA
ACATTCTCACTGCCTCAAAATTACTCAATCCAATGCGTCGATGAAAT back to topprotein sequence of rna3481 >rna3481-protein ID=rna3481-protein|Name=rna3481|organism=Nannochloropsis gaditana|type=polypeptide|length=232bp
MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGA
LNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCN
VIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVS
SCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHS
VKRVKEANADMRCLSVKLPEVHEDQQTRDVWW back to topmRNA from alignment at CM002461.1:520870..522776+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3481 ID=rna3481|Name=rna3481|organism=Nannochloropsis gaditana|type=mRNA|length=1907bp|location=Sequence derived from alignment at CM002461.1:520870..522776+ (Nannochloropsis gaditana)
GCTAGGGTTTGGGTCGAATGAGAAAAGTTCTTACTCATAACTTGTATCTC
GTTAGTAGTTAGTCCCTCGAAAGGAAGCTTTGACTTCGAACATGATTCTC
CAAGGGCAAGTACTGATCCTCCTTACCACTTATCTCTTTCCAAACTAATC
AAAAAGATTATCTTTGTCGGCAGGTTCATAAGGTAACGCATTCTGCAACC
CTCACGGGAAGCGTAAAATGGCTACACAGCATTTAGCGTCAGCATCCGGC
GAATTGGAAGGGCTTGTGCAGAGCACGGTAAACCTTTTTGGCGGGGTGGC
AGACAAGTTATGGCCGGCCAAAAGTAGGAACCAAGAAAAGCAAGCAGAAA
TTGGAAAAGTTGGAGCTTTGAATAGTGAAGCGTTTGATTCCAATTTTAAA
AAAGATATCAAGACATTCGAAGATCTTGATTTGCTGGTAAGCTGCACAAT
GAGGGCTTGTCGCCGTTGCTTATATGCTCGAGTCATTTAAATATATAGAT
CATGCATGGTTTCTTCACGTAGTATACAACATTTCTTCATATATTGCAGG
AGAGTGGCCATGCTCGTGAATACATAACAGAAGAATGCCTGCTTCCTTGT
CCAACAGTGAAAAAATGGTCGACTTGCAACGTTATCAAGAACGGAAAATC
GACTTTTCGCATGTACCTGGATGAGGCTCAACCCAGATTCGTCCTCAGCG
CCAAGCGTGTAGGGGACTCTTTTTTCATATCACAGTATGAATCATTTCCT
GAAAGTATCAACGGCGTGCCGGAGGTTTCTTCCTGTGCCGTCCTCCGGAC
GTGCTCGGAAGGATATTTCAAGCTTTTTCTCAACGGGTGCGAAGCGTGCG
ATAAGAAGGCAGACAAATATACGTGTGGTTCTGGCCATAGCTTTGACAAT
CGACAGCTTTTGGCAGAGATCAATCATGTACGTACCAAAAAACAATGCAA
ATGTAAGACGAAGGATGCTGGACATATATCCAGTAATATCATCAATTCAG
AGGATGCGCTCAATTTGTGTCACCATCTATTAGTAAGGCTCGGTTCGCCT
TACATCTACTGACTTTTCTGAAATTTGTTCCTTTTCGCCTGCATGCATAT
ACAGTCTGTCAAAAGGGTAAAAGAGGCAAATGCAGATATGCGTTGTTTGT
CAGTCAAATTACCCGAGGTGCACGAGGACCAGCAGACGAGGGATGTGTGG
TGGTAAGTAATTTATGCGAAGAAGTTGAATCATCCAGTAGAAATGTGAGC
GCCAAATATCATACAGGCTGGTATAATGTCGAGAATTCGTAGTACTCTTT
GCAAATGGCTGCTTCCAATGAGGTCTTGGGCCTGGATTGCTCCTCTTCAG
AGCTTACATATCTCCTAACTGTTGTCCTTTATCAAAACACACCATTACAT
CAGCCCGCGTATGGAGCAAGCACGTAGATCCAATAATGCAGAACTGAAAA
CAAGACATTTCCGTTTGCACAACAAGCTGCCTGAGTGGAACGAAGCTCTT
CAAAGCTTGGTACTGCGCTTCAATAAAGGTCGCGTGCTGGCGCCATCAGC
AAAGAATTTTTTGATCTGTTTAGACGGTCAGGATAATGGAGAGGGCGTGC
TCCAGTTTGGCAAAACACGGAAAAGGCGTTATGCCTTAGATTTTCGCCAT
CCCGTCAGTCCCCTTCAAGCTTTCGGTATATGTCTATCGTTTTTTAATTG
GAACGTATAGATAAGGGATTCCTGCATATGTAGTGTATTTACATCCTACG
TAAAGTAGAATCGCTGAGAAGCACAAATCTACTAGGCCGTTGACATGCAC
ATTGAAAGAAACAAACAATGTACGAAGACTCACGTAAAAATCACGGACGG
AAGGCAAAGTTTCTGCTTTCTGCTTGACGCACAGTGTAGGCGGGCGCCAG
ACTCGGG back to topCoding sequence (CDS) from alignment at CM002461.1:520870..522776+ >rna3481 ID=rna3481|Name=rna3481|organism=Nannochloropsis gaditana|type=CDS|length=2097bp|location=Sequence derived from alignment at CM002461.1:520870..522776+ (Nannochloropsis gaditana)
ATGGCTACACAGCATTTAGCGTCAGCATCCGGCGAATTGGAAGGGCTTGT
GCAGAGCACGGTAAACCTTTTTGGCGGGGTGGCAGACAAGTTATGGCCGG
CCAAAAGTAGGAACCAAGAAAAGCAAGCAGAAATTGGAAAAGTTGGAGCT
TTGAATAGTGAAGCGTTTGATTCCAATTTTAAAAAAGATATCAAGACATT
CGAAGATCTTGATTTGCTGGAGAGTGGCCATGCTCGTGAATACATAACAG
AAGAATGCCTGCTTCCTTGTCCAACAGTGAAAAAATGGTCGACTTGCAAC
GTTATCAAGAACGGAAAATCGACTTTTCGCATGTACCTGGATGAGGCTCA
ACCCAGATTCGTCCTCAGCGCCAAGCGTGTAGGGGACTCTTTTTTCATAT
CACAGTATGAATCATTTCCTGAAAGTATCAACGGCGTGCCGGAGGTTTCT
TCCTGTGCCGTCCTCCGGACGTGCTCGGAAGGATATTTCAAGCTTTTTCT
CAACGGGTGCGAAGCGTGCGATAAGAAGGCAGACAAATATACGTGTGGTT
CTGGCCATAGCTTTGACAATCGACAGCTTTTGGCAGAGATCAATCATTCT
GTCAAAAGGGTAAAAGAGGCAAATGCAGATATGCGTTGTTTGTCAGTCAA
ATTACCCGAGGTGCACGAGGACCAGCAGACGAGGGATGTGTGGTGGTAAA
TGGCTACACAGCATTTAGCGTCAGCATCCGGCGAATTGGAAGGGCTTGTG
CAGAGCACGGTAAACCTTTTTGGCGGGGTGGCAGACAAGTTATGGCCGGC
CAAAAGTAGGAACCAAGAAAAGCAAGCAGAAATTGGAAAAGTTGGAGCTT
TGAATAGTGAAGCGTTTGATTCCAATTTTAAAAAAGATATCAAGACATTC
GAAGATCTTGATTTGCTGGAGAGTGGCCATGCTCGTGAATACATAACAGA
AGAATGCCTGCTTCCTTGTCCAACAGTGAAAAAATGGTCGACTTGCAACG
TTATCAAGAACGGAAAATCGACTTTTCGCATGTACCTGGATGAGGCTCAA
CCCAGATTCGTCCTCAGCGCCAAGCGTGTAGGGGACTCTTTTTTCATATC
ACAGTATGAATCATTTCCTGAAAGTATCAACGGCGTGCCGGAGGTTTCTT
CCTGTGCCGTCCTCCGGACGTGCTCGGAAGGATATTTCAAGCTTTTTCTC
AACGGGTGCGAAGCGTGCGATAAGAAGGCAGACAAATATACGTGTGGTTC
TGGCCATAGCTTTGACAATCGACAGCTTTTGGCAGAGATCAATCATTCTG
TCAAAAGGGTAAAAGAGGCAAATGCAGATATGCGTTGTTTGTCAGTCAAA
TTACCCGAGGTGCACGAGGACCAGCAGACGAGGGATGTGTGGTGGTAAAT
GGCTACACAGCATTTAGCGTCAGCATCCGGCGAATTGGAAGGGCTTGTGC
AGAGCACGGTAAACCTTTTTGGCGGGGTGGCAGACAAGTTATGGCCGGCC
AAAAGTAGGAACCAAGAAAAGCAAGCAGAAATTGGAAAAGTTGGAGCTTT
GAATAGTGAAGCGTTTGATTCCAATTTTAAAAAAGATATCAAGACATTCG
AAGATCTTGATTTGCTGGAGAGTGGCCATGCTCGTGAATACATAACAGAA
GAATGCCTGCTTCCTTGTCCAACAGTGAAAAAATGGTCGACTTGCAACGT
TATCAAGAACGGAAAATCGACTTTTCGCATGTACCTGGATGAGGCTCAAC
CCAGATTCGTCCTCAGCGCCAAGCGTGTAGGGGACTCTTTTTTCATATCA
CAGTATGAATCATTTCCTGAAAGTATCAACGGCGTGCCGGAGGTTTCTTC
CTGTGCCGTCCTCCGGACGTGCTCGGAAGGATATTTCAAGCTTTTTCTCA
ACGGGTGCGAAGCGTGCGATAAGAAGGCAGACAAATATACGTGTGGTTCT
GGCCATAGCTTTGACAATCGACAGCTTTTGGCAGAGATCAATCATTCTGT
CAAAAGGGTAAAAGAGGCAAATGCAGATATGCGTTGTTTGTCAGTCAAAT
TACCCGAGGTGCACGAGGACCAGCAGACGAGGGATGTGTGGTGGTAA back to top
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