EWM27228.1, cds3472 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|585109408|gb|EWM27228.1| (tubby-like protein [Nannochloropsis gaditana]) HSP 1 Score: 485.337 bits (1248), Expect = 1.212e-173 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query: 1 MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGALNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVWW 232
MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGALNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVWW
Sbjct: 1 MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGALNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVWW 232
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|585109407|gb|EWM27227.1| (tubby-like protein [Nannochloropsis gaditana]) HSP 1 Score: 479.945 bits (1234), Expect = 6.540e-170 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query: 1 MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGALNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGALNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW
Sbjct: 1 MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGALNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|325188436|emb|CCA22972.1| (cleavage induced conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 156.762 bits (395), Expect = 2.614e-42 Identity = 80/174 (45.98%), Postives = 111/174 (63.79%), Query Frame = 0
Query: 67 FEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPES--INGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGS-------GHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
F+D+D+LESGHAREYI EECL P + W+ V + K+ FRMY + Q F+LSAK++G SF+ISQYE FPE+ + +P + CAVLR SE FKL+ GCE CD + ++C + H +RQLLA+I H K EA ++MRC SV +P + ED+++R +W
Sbjct: 69 FQDMDMLESGHAREYIAEECLSPTQS-NTWTYTRVERKDKTEFRMYWNSDQ--FLLSAKQIGGSFYISQYEHFPEAQAPDSIPTENYCAVLRQVSESNFKLYSCGCEGCDMSFNTFSCCNTNESAVLSHEGADRQLLADITHHTKLAGEAGSEMRCFSVVIPAIMEDKRSRVIW 239
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|635370243|emb|CCI41541.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 154.836 bits (390), Expect = 1.282e-41 Identity = 82/188 (43.62%), Postives = 120/188 (63.83%), Query Frame = 0
Query: 53 SEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPES--INGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTC-GSGHSFD------NRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
SE++ ++ K++ F+D+D+LESGHAREY+ EECL P + W+ V + K+ FRMY + Q F+LSAK++G SF+ISQYE FPE+ N +P + CAVLR S+ FKL+ GCE CD + ++C + S D +RQLLA+I H K E ++MRC SV +P + ED+++R +W
Sbjct: 57 SESWGNSVKRE--KFQDMDMLESGHAREYLAEECLSPTQS-NNWTYTRVERKDKTEFRMYWNSDQ--FLLSAKKIGGSFYISQYEHFPEAQASNTIPTENYCAVLRQVSDNNFKLYSCGCEGCDMSFNTFSCCNTNESADLSPEGADRQLLADITHHTKLAGEVGSEMRCFSVIIPAIMEDKRSRVIW 239
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|675203397|ref|XP_008910583.1| (hypothetical protein PPTG_15284 [Phytophthora parasitica INRA-310] >gi|566016662|gb|ETI39573.1| hypothetical protein F443_14842 [Phytophthora parasitica P1569] >gi|567954100|gb|ETK79741.1| hypothetical protein L915_14421 [Phytophthora parasitica] >gi|567982756|gb|ETL33165.1| hypothetical protein L916_14324 [Phytophthora parasitica] >gi|568012262|gb|ETL86440.1| hypothetical protein L917_14125 [Phytophthora parasitica] >gi|568042242|gb|ETM39585.1| hypothetical protein L914_14271 [Phytophthora parasitica] >gi|568089261|gb|ETN04108.1| hypothetical protein PPTG_15284 [Phytophthora parasitica INRA-310] >gi|570320364|gb|ETO68312.1| hypothetical protein F444_14837 [Phytophthora parasitica P1976] >gi|570944197|gb|ETP09454.1| hypothetical protein F441_14676 [Phytophthora parasitica CJ01A1] >gi|570975468|gb|ETP37510.1| hypothetical protein F442_14684 [Phytophthora parasitica P10297] >gi|970648944|gb|KUF88345.1| king tubby 1 protein [Phytophthora nicotianae] >gi|970651473|gb|KUF90284.1| king tubby 1 protein [Phytophthora nicotianae]) HSP 1 Score: 149.058 bits (375), Expect = 2.261e-39 Identity = 79/196 (40.31%), Postives = 117/196 (59.69%), Query Frame = 0
Query: 47 KVGALNSEAFDSNFKKDIK--TFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGV-PEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHS--------FDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
K G SE + I+ F+D+D+LESGHAREY+ EECL P K W+ V + K+ ++MY + Q F+LSAK++G +F+ISQYE+FP++ + P CAVLR ++ FKL+ GCE CD+ + +TC + H +RQLLA+I+H K ++MRC SV +P + ED+++R VW
Sbjct: 53 KDGTPTSEVTSPTWGNTIRKEPFQDMDMLESGHAREYLAEECLSPT-QAKAWTYSTVERTNKNQYKMYWNNDQ--FLLSAKQIGGTFYISQYENFPDTEDAEEPTGHYCAVLRKATDNNFKLYSCGCEGCDQSFNTFTCSNTHEDATAAAVEGADRQLLADISHFTKAAGVVGSEMRCFSVIIPAIMEDKRSRVVW 245
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|1214709749|gb|OWZ20901.1| (hypothetical protein PHMEG_0004629 [Phytophthora megakarya]) HSP 1 Score: 148.673 bits (374), Expect = 2.936e-39 Identity = 78/174 (44.83%), Postives = 111/174 (63.79%), Query Frame = 0
Query: 67 FEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGV-PEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTC------GSGHSFD--NRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
F+D+D+LESGHAREY+ EECL P K W+ V ++ K+ ++MY + Q F+LSAK+VG +F+ISQYE+FPES G P CAVLR ++ FKL+ GCE CD+ YTC + + + +RQLLA+I+H K ++MRC SV +P + ED+++R VW
Sbjct: 77 FQDMDMLESGHAREYLAEECLSPT-QAKSWTYSTVERSNKNQYKMYWNNDQ--FLLSAKQVGGTFYISQYENFPESGEGEEPMGHYCAVLRKATDHNFKLYSCGCEGCDQSFSTYTCHNVSEDATAEAVEGADRQLLADISHFTKAAGVVGSEMRCFSVIIPAIMEDKRSRVVW 247
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|301092917|ref|XP_002997309.1| (cleavage induced conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110871|gb|EEY68923.1| cleavage induced conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 145.976 bits (367), Expect = 3.430e-38 Identity = 77/199 (38.69%), Postives = 119/199 (59.80%), Query Frame = 0
Query: 44 EIGKVGALNSEAFDSNFKKDI--KTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESING-VPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGH--------SFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
++ K G +E + I + F+D+D+LESGHAREY+ EECL P K W+ V + K+ ++MY + Q F+LSAK++G +F+ISQYE+FPE+ + P CAV+R ++ FKL+ GCE CD+ + +TC + H +RQLLA+I+H K ++MRC SV +P + +D+++R VW
Sbjct: 51 DVKKDGTPTTEVTSPTWGNTIHKEPFQDMDMLESGHAREYLAEECLSPT-QAKAWTYSTVERTNKNQYKMYWNNDQ--FLLSAKQIGGTFYISQYENFPETEDAEEPTGHYCAVVRKATDHNFKLYSCGCEGCDQSFNTFTCSNIHEDATAAAVEGADRQLLADISHFTKAAGVVGSEMRCFSVVIPAIMDDKRSRVVW 246
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|695455080|ref|XP_009536624.1| (hypothetical protein PHYSODRAFT_565184 [Phytophthora sojae] >gi|348668628|gb|EGZ08452.1| hypothetical protein PHYSODRAFT_565184 [Phytophthora sojae]) HSP 1 Score: 144.821 bits (364), Expect = 1.126e-37 Identity = 75/174 (43.10%), Postives = 108/174 (62.07%), Query Frame = 0
Query: 67 FEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESING-VPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTC--------GSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
F+D+D+LE+GHAREY+ EECL P + K W+ V + K+ ++MY + Q F+LSAK+VG +F+ISQYE+FPES P CAVLR ++ FKL+ GCE CD+ YTC + +RQLLA+I+H K ++MRC SV +P + +D+++R VW
Sbjct: 77 FQDMDMLENGHAREYLAEECLSPTQS-KSWTYSTVERTNKNQYKMYWNNDQ--FLLSAKQVGGTFYISQYENFPESGEADEPTGHYCAVLRKATDHNFKLYSCGCEGCDQSFSTYTCSNINEDAAATAVEGADRQLLADISHFTKAAGVVGSEMRCFSVVIPAIMDDKRSRVVW 247
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|953495506|emb|CEG42402.1| (Tub family proteins [Plasmopara halstedii]) HSP 1 Score: 139.428 bits (350), Expect = 1.134e-35 Identity = 72/174 (41.38%), Postives = 107/174 (61.49%), Query Frame = 0
Query: 67 FEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGV-PEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHS--------FDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
F+D+D+LE+GHAREY+ E+CL P K W+ V + K+ F+M+ + F+LSAK++G +F+ISQYE+FPES P CAVLR ++ FKL+ GCE CD+ +TC + H +RQLLA+I+H K ++MRC SV +P + +D+++R VW
Sbjct: 76 FQDMDMLENGHAREYLAEQCLSPS-QAKSWTYSIVERMNKNQFKMFWNNDL--FLLSAKQIGGTFYISQYENFPESDEAEEPTGHYCAVLRKSTDHSFKLYSCGCEGCDQSFSTFTCSNIHEDATSAAIEGADRQLLADISHYTKAAGVVGSEMRCFSVVIPAIMDDKRSRVVW 246
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|698819471|ref|XP_009842764.1| (hypothetical protein H257_16129 [Aphanomyces astaci] >gi|574102217|gb|ETV67771.1| hypothetical protein H257_16129 [Aphanomyces astaci]) HSP 1 Score: 139.043 bits (349), Expect = 1.142e-35 Identity = 77/182 (42.31%), Postives = 109/182 (59.89%), Query Frame = 0
Query: 67 FEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESI----NGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFD-------------NRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
F+D+DLLESG+AREYITE+ L P + K W+ V + K+ ++M+ + Q F+LSAK+ F+ISQYE F ES + VP CAVL+ ++ FKL+ GCE CD+ KYTC + H +RQLLA+I+H K V +++MRCLSV +P V ED ++R +W
Sbjct: 73 FQDMDLLESGNAREYITEDSLSPT-SAKSWTYSTVHRINKTQYKMFWNNDQ--FLLSAKQHNGMFYISQYEHFGESSADSSSAVPTSHYCAVLKRTTDNSFKLYNCGCEGCDQGFSKYTCSNDHETSSNFGFTEEAGEGADRQLLADISHFTKVVSGISSEMRCLSVVIPAVMEDSRSRVIW 251 The following BLAST results are available for this feature:
BLAST of EWM27228.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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