EWM27228.1, cds3472 (CDS) Nannochloropsis gaditana

Overview
NameEWM27228.1
Unique Namecds3472
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:521087..521305 +
Alignment locationCM002461.1:521419..521796 +
Alignment locationCM002461.1:521974..522075 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27228.1
Producttubby-like protein
Orig transcript idgnl|cribi|Naga_100010g35.6198.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:521087..521305 +
CM002461.1supercontigCM002461.1:521419..521796 +
CM002461.1supercontigCM002461.1:521974..522075 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|585109408|gb|EWM27228.1| (tubby-like protein [Nannochloropsis gaditana])

HSP 1 Score: 485.337 bits (1248), Expect = 1.212e-173
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query:    1 MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGALNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVWW 232
            MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGALNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVWW
Sbjct:    1 MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGALNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVWW 232          
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|585109407|gb|EWM27227.1| (tubby-like protein [Nannochloropsis gaditana])

HSP 1 Score: 479.945 bits (1234), Expect = 6.540e-170
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    1 MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGALNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
            MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGALNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW
Sbjct:    1 MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGALNSEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231          
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|325188436|emb|CCA22972.1| (cleavage induced conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 156.762 bits (395), Expect = 2.614e-42
Identity = 80/174 (45.98%), Postives = 111/174 (63.79%), Query Frame = 0
Query:   67 FEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPES--INGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGS-------GHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
            F+D+D+LESGHAREYI EECL P  +   W+   V +  K+ FRMY +  Q  F+LSAK++G SF+ISQYE FPE+   + +P  + CAVLR  SE  FKL+  GCE CD   + ++C +        H   +RQLLA+I H  K   EA ++MRC SV +P + ED+++R +W
Sbjct:   69 FQDMDMLESGHAREYIAEECLSPTQS-NTWTYTRVERKDKTEFRMYWNSDQ--FLLSAKQIGGSFYISQYEHFPEAQAPDSIPTENYCAVLRQVSESNFKLYSCGCEGCDMSFNTFSCCNTNESAVLSHEGADRQLLADITHHTKLAGEAGSEMRCFSVVIPAIMEDKRSRVIW 239          
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|635370243|emb|CCI41541.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 154.836 bits (390), Expect = 1.282e-41
Identity = 82/188 (43.62%), Postives = 120/188 (63.83%), Query Frame = 0
Query:   53 SEAFDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPES--INGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTC-GSGHSFD------NRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
            SE++ ++ K++   F+D+D+LESGHAREY+ EECL P  +   W+   V +  K+ FRMY +  Q  F+LSAK++G SF+ISQYE FPE+   N +P  + CAVLR  S+  FKL+  GCE CD   + ++C  +  S D      +RQLLA+I H  K   E  ++MRC SV +P + ED+++R +W
Sbjct:   57 SESWGNSVKRE--KFQDMDMLESGHAREYLAEECLSPTQS-NNWTYTRVERKDKTEFRMYWNSDQ--FLLSAKKIGGSFYISQYEHFPEAQASNTIPTENYCAVLRQVSDNNFKLYSCGCEGCDMSFNTFSCCNTNESADLSPEGADRQLLADITHHTKLAGEVGSEMRCFSVIIPAIMEDKRSRVIW 239          
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|675203397|ref|XP_008910583.1| (hypothetical protein PPTG_15284 [Phytophthora parasitica INRA-310] >gi|566016662|gb|ETI39573.1| hypothetical protein F443_14842 [Phytophthora parasitica P1569] >gi|567954100|gb|ETK79741.1| hypothetical protein L915_14421 [Phytophthora parasitica] >gi|567982756|gb|ETL33165.1| hypothetical protein L916_14324 [Phytophthora parasitica] >gi|568012262|gb|ETL86440.1| hypothetical protein L917_14125 [Phytophthora parasitica] >gi|568042242|gb|ETM39585.1| hypothetical protein L914_14271 [Phytophthora parasitica] >gi|568089261|gb|ETN04108.1| hypothetical protein PPTG_15284 [Phytophthora parasitica INRA-310] >gi|570320364|gb|ETO68312.1| hypothetical protein F444_14837 [Phytophthora parasitica P1976] >gi|570944197|gb|ETP09454.1| hypothetical protein F441_14676 [Phytophthora parasitica CJ01A1] >gi|570975468|gb|ETP37510.1| hypothetical protein F442_14684 [Phytophthora parasitica P10297] >gi|970648944|gb|KUF88345.1| king tubby 1 protein [Phytophthora nicotianae] >gi|970651473|gb|KUF90284.1| king tubby 1 protein [Phytophthora nicotianae])

HSP 1 Score: 149.058 bits (375), Expect = 2.261e-39
Identity = 79/196 (40.31%), Postives = 117/196 (59.69%), Query Frame = 0
Query:   47 KVGALNSEAFDSNFKKDIK--TFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGV-PEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHS--------FDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
            K G   SE     +   I+   F+D+D+LESGHAREY+ EECL P    K W+   V +  K+ ++MY +  Q  F+LSAK++G +F+ISQYE+FP++ +   P    CAVLR  ++  FKL+  GCE CD+  + +TC + H           +RQLLA+I+H  K      ++MRC SV +P + ED+++R VW
Sbjct:   53 KDGTPTSEVTSPTWGNTIRKEPFQDMDMLESGHAREYLAEECLSPT-QAKAWTYSTVERTNKNQYKMYWNNDQ--FLLSAKQIGGTFYISQYENFPDTEDAEEPTGHYCAVLRKATDNNFKLYSCGCEGCDQSFNTFTCSNTHEDATAAAVEGADRQLLADISHFTKAAGVVGSEMRCFSVIIPAIMEDKRSRVVW 245          
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|1214709749|gb|OWZ20901.1| (hypothetical protein PHMEG_0004629 [Phytophthora megakarya])

HSP 1 Score: 148.673 bits (374), Expect = 2.936e-39
Identity = 78/174 (44.83%), Postives = 111/174 (63.79%), Query Frame = 0
Query:   67 FEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGV-PEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTC------GSGHSFD--NRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
            F+D+D+LESGHAREY+ EECL P    K W+   V ++ K+ ++MY +  Q  F+LSAK+VG +F+ISQYE+FPES  G  P    CAVLR  ++  FKL+  GCE CD+    YTC       +  + +  +RQLLA+I+H  K      ++MRC SV +P + ED+++R VW
Sbjct:   77 FQDMDMLESGHAREYLAEECLSPT-QAKSWTYSTVERSNKNQYKMYWNNDQ--FLLSAKQVGGTFYISQYENFPESGEGEEPMGHYCAVLRKATDHNFKLYSCGCEGCDQSFSTYTCHNVSEDATAEAVEGADRQLLADISHFTKAAGVVGSEMRCFSVIIPAIMEDKRSRVVW 247          
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|301092917|ref|XP_002997309.1| (cleavage induced conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110871|gb|EEY68923.1| cleavage induced conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 145.976 bits (367), Expect = 3.430e-38
Identity = 77/199 (38.69%), Postives = 119/199 (59.80%), Query Frame = 0
Query:   44 EIGKVGALNSEAFDSNFKKDI--KTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESING-VPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGH--------SFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
            ++ K G   +E     +   I  + F+D+D+LESGHAREY+ EECL P    K W+   V +  K+ ++MY +  Q  F+LSAK++G +F+ISQYE+FPE+ +   P    CAV+R  ++  FKL+  GCE CD+  + +TC + H           +RQLLA+I+H  K      ++MRC SV +P + +D+++R VW
Sbjct:   51 DVKKDGTPTTEVTSPTWGNTIHKEPFQDMDMLESGHAREYLAEECLSPT-QAKAWTYSTVERTNKNQYKMYWNNDQ--FLLSAKQIGGTFYISQYENFPETEDAEEPTGHYCAVVRKATDHNFKLYSCGCEGCDQSFNTFTCSNIHEDATAAAVEGADRQLLADISHFTKAAGVVGSEMRCFSVVIPAIMDDKRSRVVW 246          
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|695455080|ref|XP_009536624.1| (hypothetical protein PHYSODRAFT_565184 [Phytophthora sojae] >gi|348668628|gb|EGZ08452.1| hypothetical protein PHYSODRAFT_565184 [Phytophthora sojae])

HSP 1 Score: 144.821 bits (364), Expect = 1.126e-37
Identity = 75/174 (43.10%), Postives = 108/174 (62.07%), Query Frame = 0
Query:   67 FEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESING-VPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTC--------GSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
            F+D+D+LE+GHAREY+ EECL P  + K W+   V +  K+ ++MY +  Q  F+LSAK+VG +F+ISQYE+FPES     P    CAVLR  ++  FKL+  GCE CD+    YTC         +     +RQLLA+I+H  K      ++MRC SV +P + +D+++R VW
Sbjct:   77 FQDMDMLENGHAREYLAEECLSPTQS-KSWTYSTVERTNKNQYKMYWNNDQ--FLLSAKQVGGTFYISQYENFPESGEADEPTGHYCAVLRKATDHNFKLYSCGCEGCDQSFSTYTCSNINEDAAATAVEGADRQLLADISHFTKAAGVVGSEMRCFSVVIPAIMDDKRSRVVW 247          
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|953495506|emb|CEG42402.1| (Tub family proteins [Plasmopara halstedii])

HSP 1 Score: 139.428 bits (350), Expect = 1.134e-35
Identity = 72/174 (41.38%), Postives = 107/174 (61.49%), Query Frame = 0
Query:   67 FEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGV-PEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHS--------FDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
            F+D+D+LE+GHAREY+ E+CL P    K W+   V +  K+ F+M+ +     F+LSAK++G +F+ISQYE+FPES     P    CAVLR  ++  FKL+  GCE CD+    +TC + H           +RQLLA+I+H  K      ++MRC SV +P + +D+++R VW
Sbjct:   76 FQDMDMLENGHAREYLAEQCLSPS-QAKSWTYSIVERMNKNQFKMFWNNDL--FLLSAKQIGGTFYISQYENFPESDEAEEPTGHYCAVLRKSTDHSFKLYSCGCEGCDQSFSTFTCSNIHEDATSAAIEGADRQLLADISHYTKAAGVVGSEMRCFSVVIPAIMDDKRSRVVW 246          
BLAST of EWM27228.1 vs. NCBI_GenBank
Match: gi|698819471|ref|XP_009842764.1| (hypothetical protein H257_16129 [Aphanomyces astaci] >gi|574102217|gb|ETV67771.1| hypothetical protein H257_16129 [Aphanomyces astaci])

HSP 1 Score: 139.043 bits (349), Expect = 1.142e-35
Identity = 77/182 (42.31%), Postives = 109/182 (59.89%), Query Frame = 0
Query:   67 FEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESI----NGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFD-------------NRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVW 231
            F+D+DLLESG+AREYITE+ L P  + K W+   V +  K+ ++M+ +  Q  F+LSAK+    F+ISQYE F ES     + VP    CAVL+  ++  FKL+  GCE CD+   KYTC + H                +RQLLA+I+H  K V   +++MRCLSV +P V ED ++R +W
Sbjct:   73 FQDMDLLESGNAREYITEDSLSPT-SAKSWTYSTVHRINKTQYKMFWNNDQ--FLLSAKQHNGMFYISQYEHFGESSADSSSAVPTSHYCAVLKRTTDNSFKLYNCGCEGCDQGFSKYTCSNDHETSSNFGFTEEAGEGADRQLLADISHFTKVVSGISSEMRCLSVVIPAVMEDSRSRVIW 251          
The following BLAST results are available for this feature:
BLAST of EWM27228.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109408|gb|EWM27228.1|1.212e-173100.00tubby-like protein [Nannochloropsis gaditana][more]
gi|585109407|gb|EWM27227.1|6.540e-170100.00tubby-like protein [Nannochloropsis gaditana][more]
gi|325188436|emb|CCA22972.1|2.614e-4245.98cleavage induced conserved hypothetical protein [A... [more]
gi|635370243|emb|CCI41541.1|1.282e-4143.62unnamed protein product [Albugo candida][more]
gi|675203397|ref|XP_008910583.1|2.261e-3940.31hypothetical protein PPTG_15284 [Phytophthora para... [more]
gi|1214709749|gb|OWZ20901.1|2.936e-3944.83hypothetical protein PHMEG_0004629 [Phytophthora m... [more]
gi|301092917|ref|XP_002997309.1|3.430e-3838.69cleavage induced conserved hypothetical protein [P... [more]
gi|695455080|ref|XP_009536624.1|1.126e-3743.10hypothetical protein PHYSODRAFT_565184 [Phytophtho... [more]
gi|953495506|emb|CEG42402.1|1.134e-3541.38Tub family proteins [Plasmopara halstedii][more]
gi|698819471|ref|XP_009842764.1|1.142e-3542.31hypothetical protein H257_16129 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3481rna3481Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications