rna3474, rna3474 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3474
Unique Name	rna3474
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1779
Alignment location	CM002461.1:498235..500676 -

Link to JBrowse

Properties


Property Name	Value
Product	flap endonuclease 1-like protein
Orig transcript id	gnl\|cribi\|Naga_100010g27.6173.mrna
Orig protein id	gnl\|cribi\|Naga_100010g27.6173
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:498235..500676 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g27	gene3348	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27203.1	cds3465	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3474	rna3474-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:498235..500676-
coding sequence from alignment at CM002461.1:498235..500676-

mRNA sequence

>rna3474 ID=rna3474|Name=rna3474|organism=Nannochloropsis gaditana|type=mRNA|length=1779bp
TCATTATTTCATCTCGCTTCTCTGCCTTACGTGATGAGCTGCCGGTGGTC
TCAGCCGTCTCACCGCTGCTCCTTGTCCGTTTCGAGCCAGACGGGGTCTG
CAAAGGCGCTCCATCTTTCGACACTTCTGACACCGTCGAGGCTTTAGGAC
TGCTCTCATGTCCACCTGCGGCTTTTGATCTTCCTGCTGCGCCCGCCTTC
TTTTTCAATGGCATGCTTGCCCTGGGACCACTCAAAAATCGGGGCAAAAA
TACAGGTGCCGCGCGAACCTCAGGAATTCTATGCAGGGATCAATATTTAG
AGAAACTCGAGCTCGTAAAGTGCGCGTAAAATTGTTATCAATTGCCCGAA
CCCCGTGGGCCCTCCCCCTCAGGAGGCTCTCTCTCGCCCCCCCACGTGCC
CCCCCATAGCATCCAGCATCTAGTTTGTGCCTCGGCATGTGACACTCCTC
TCGCCCCTCTTTCAACATGATTATAACCACTCAAGAGGCTCCTCAATCCT
TTGCCTTCCATGCTGCGTTCTCCTGTCCCTCCTCCCTCATTGCCCTTTTG
ATTTTCATCACAGCTACGAAGGCATGCAACACGCCTGAACGCACGACCCG
GGCACTGCCTCCCTTTCCCTTTCTCGCTTTGCTCTCTTTCTTCTGACCAA
TTTTTCGTCACCATTTCCCTAATATTTGCTCGGCGTCGCAAAGAACAAAA
TGACACGAGTATCCTTGCGGCAGTCAGCACTTGTCGTCTCCCTGTACCTC
CTCCTCGGTACCTATGCCTTCACTGTGCCGCCCTTAAATCAAGTTTCCCA
GTCTAGTAGGTCACACAGGCGTCGAATATGCCCGTCATACATGATTGCCA
ACTTCTTAGGTGGCGGGGGCGAGCCTCAAGGGATTCCAAGGTCCATCAAA
GACGGTATAAATGGGCTGCGCTTTGCCATGCAACGTGCGCTCCGGGACAG
GAAATCAAGGGCAGAGATAAATTTACCCCGGGGGACGCCGCTGGGTGTGG
AAGGCCCAGGAGCGGGTTCGGCGGACGACGATAAATATGAGAAATCAGAC
CGCGAGCTGGCACGATTGACCGTGGAACTCTTCAAGCCCATAATTGACAA
CACAGTTGTGATATTTTCTCAAGGCCGTCAAGCCCGTCGAGCGGCCAGCA
TCTGGGGCACGGCGCTAGTGAAAACCATGGCATTGGATGAGATGACATCG
TCAGCCATAAAGCGAAAAAATAAGAAAGCCAAGAAGGGGGGCGGCTTCGG
CGCTTCTGAAGGGGGGGGGGAGATGACCACGCTGCCTCCGGGTACTGAGG
TGTGCATTGTAGTGGCTCCAGGCCCCAAAGAATTAAGCGCAGTGAGGAGA
TTGAGCGAAAGTTTGGGCTTCGACACGCTCCTCATCATTCTCAACACTCC
TCTGGAGGAGGCATCGCCCCATCTGCCTAAAGACGAGGCCGTCGCCTTGC
TGAGCGAGTTCGAGCCTGTCTTTTTCCTGAATGTATTGAACGACGCCGCA
GTCAAGACACTGGACAACGTCTTACTTTACAGAAGCTATCCAGGGGAATG
GTCAATCGCTCAAAAGGGAGCATTGGGCCCCCCCAAAATCCTGGCTTCCA
AACCAGAGCGCTTCACGAAAGAGGAGAAGTTGATAGCCTTGCGTGAGGGC
GCCGAGAACAACGCGAAGCCTTTACTAGAGAAGCTGACTTCGAGCCTGTG
GGGGAGCGGGTGACATGGTCGGCAGCTCGACAAGAGTGTGACACGTAATG
AAAGTAATTCATTTATTTTAGGGTTTATG

protein sequence of rna3474

>rna3474-protein ID=rna3474-protein|Name=rna3474|organism=Nannochloropsis gaditana|type=polypeptide|length=813bp
MGISGLWNFLRDQGHVRNLDGVELARHVENKVLAVDASLWLMQCRKESTY
LHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKG
MSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYC
QGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGV
SISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGE
GSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAGK
KVRGTKGCQKCGMLPKVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCL
CMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAYKAASDAAMDL
TRSLRSAGDEATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGM
GGRNLARKLLPLLLEWDARHIGDVLGPGPDAQEVGARELALATHQGYLFA
PIRIDRVCQIGGGGWRYAMDWVALRPEAESLIAEAAEGMQRAAGSQWTSQ
GGGKMLPSLKEVLSEGRGSLRRSLVEAKYPYLVRAFEQRCQRVRPSRPRK
EQGRDALASVIRPEGRLEHFFSPLKAALIPPSSPSQPPGVQSSESPSKSS
PRVTPTLSHTDFHVESPVSAPSPTVRLGTRSSHSCCVPRAPRKGKPPDLL
DKGIERQGLGGRSARRNLDHFFKRARFDDHPDPSDSSVHGAPRQIHVDIR
CVDEEETDGEDLLIDLTADPLPHFSEVAEFATTEEDWAVLNITGTDENIV
DVSKERRMRRIDC

mRNA from alignment at CM002461.1:498235..500676-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3474 ID=rna3474|Name=rna3474|organism=Nannochloropsis gaditana|type=mRNA|length=2442bp|location=Sequence derived from alignment at CM002461.1:498235..500676- (Nannochloropsis gaditana)
ATGGGGATCTCAGGATTGTGGAATTTCCTCCGTGACCAAGGCCACGTTCG
CAATCTTGATGGTGTGGAGTTGGCGAGGCATGTTGAAAATAAGGTCCTGG
CTGTGGATGCCTCCCTTTGGTTGATGCAGTGTCGGAAGGAGAGCACATAT
CTCCACGACAAAAAGCACATCAAAGTGGTGTTCGAGCGCGTGATTCATTA
TTTGCGACTTGGTGCCCTGCCTGTCCTGGTCTTTGAGGGGTACACCCCCC
CGGCCAAGCAAACAAAAATGGAGCGCCGTCGTAAGACGATGTGGAAAGGC
ATGTCGTCTCCGAGCCAGCCTTACGTGCCGCGCTGTAACCACTCCCTTAT
GCAGCTGGGAGAGGACGTGAAAAAATTGTTAGATGCGATGGGATTGCCTT
ACGAGCAGGCAGGCGGCGAAGGGGAGGCTCTCTGTGCCGTGATGTATTGT
CAAGGCCTGGTGGACTCGGTAGTCTCGAGCGACGGCGATGCCCTGCTGTA
CGGGGCCCGCCGCCTGTACAAGGACCTGCGTCTGCACGCGAGGCTGCTTC
CGGACAATCACTCCGGAGAGTGGGTGGCCCTGGAGAATGATGATGGTGTG
TCGATCTCAGGGCAAGACCTGATGGCAGTGTGCCTCCTGGCTGGGTGCGA
CTTCCTCTCGGAAGGCCTCCGACAGGTCGGGTGCATAGGGGCATGGGGAG
TAGTGCGTGCCCTAAAGGCCCGACGGGCGCGAATCCTACAGCAGGGGGAG
GGTAGTGCCGCTAACATCGCGCTTGGAAGCAGAAGCTTGGTGGACTTGCT
GCGCTCCTGTCTATCGGAAGCGGTGGATGAGCCGATGACGGCGCCTGCAG
CAGGCGCATGCGTGACCTGTCGAAGTCATCCGCATGTAGAGGCAGGAAAG
AAAGTGCGCGGTACAAAGGGGTGCCAGAAGTGTGGGATGCTGCCCAAGGT
GAGGGGCGGCGTAGGAGAGGGAGGCTGCAATCGGGGACAGACGCAGGCCG
ATGCCGTGGGCGTTGGAGGCGTGTTTGTTGGGAATGACAGCCCCTGTCTG
TGTATGTCTTGCCAGCGGCGAGACGATGGGACACTCCAATTACTGGCCAA
GCGGGCAAGAGACGGCCAGGGAGGTCTGCAGGGCTATCTGCGGAAGTTTG
ACGAGGCACACGCCGCCTACAAAGCGGCCTCCGATGCGGCCATGGATTTG
ACCAGAAGTCTTCGAAGTGCCGGGGACGAGGCGACTGGCACGGACGGAAG
CGCACCGGGAAAGTGTCCAGCCCATTTTGAGTGGCGTAGGCGACCGGATG
TTGCGCTTCTCAAGGAGATGCTGGAGCCCGTCTACGGGAAGGGAGGGATG
GGAGGGAGGAACCTGGCGCGGAAGCTCCTGCCATTGCTCCTAGAGTGGGA
CGCACGGCACATCGGCGACGTACTGGGGCCGGGCCCTGACGCCCAGGAGG
TGGGTGCGAGAGAGCTAGCCCTTGCGACCCACCAAGGGTATCTGTTCGCG
CCCATCCGCATCGATCGGGTTTGCCAGATCGGTGGCGGCGGCTGGCGCTA
CGCGATGGATTGGGTAGCTCTTCGCCCGGAGGCGGAATCTCTGATTGCGG
AAGCGGCAGAGGGCATGCAGAGAGCAGCGGGCAGCCAATGGACCAGTCAA
GGGGGAGGGAAAATGTTGCCATCCCTGAAGGAGGTTCTGAGCGAGGGCCG
CGGCAGCCTCCGGCGCAGCCTAGTAGAAGCCAAGTATCCTTACCTTGTGA
GGGCGTTCGAGCAAAGGTGCCAGAGGGTACGACCGTCCCGGCCGCGGAAG
GAGCAAGGCCGTGACGCACTTGCCTCCGTGATCAGGCCGGAGGGCAGGTT
GGAGCACTTTTTCTCGCCCCTCAAAGCAGCGTTAATTCCACCTTCGTCCC
CATCACAGCCCCCCGGCGTTCAGTCCTCCGAGTCGCCATCAAAATCCTCA
CCGCGGGTCACTCCCACATTGTCTCATACTGACTTCCACGTAGAGTCTCC
GGTCTCTGCGCCTTCGCCCACTGTCCGACTCGGCACCAGGTCCTCCCATT
CGTGCTGTGTCCCGCGGGCTCCGCGCAAGGGCAAGCCCCCGGATCTTTTG
GACAAGGGAATTGAAAGGCAGGGCCTTGGAGGGAGGAGCGCGAGGAGAAA
TCTCGACCATTTTTTCAAGCGCGCGCGCTTCGACGACCACCCGGATCCCT
CGGACTCCTCCGTGCACGGCGCTCCCCGCCAAATCCATGTTGACATCAGG
TGCGTCGACGAGGAGGAGACGGATGGCGAAGACTTGCTGATAGACTTGAC
TGCAGACCCTTTACCGCACTTCTCTGAGGTCGCGGAATTTGCTACCACAG
AGGAGGACTGGGCGGTGCTTAATATCACTGGGACTGATGAGAACATCGTA
GACGTGTCCAAGGAGCGACGTATGCGGCGAATCGATTGCTAG

Coding sequence (CDS) from alignment at CM002461.1:498235..500676-

>rna3474 ID=rna3474|Name=rna3474|organism=Nannochloropsis gaditana|type=CDS|length=2442bp|location=Sequence derived from alignment at CM002461.1:498235..500676- (Nannochloropsis gaditana)
ATGGGGATCTCAGGATTGTGGAATTTCCTCCGTGACCAAGGCCACGTTCG
CAATCTTGATGGTGTGGAGTTGGCGAGGCATGTTGAAAATAAGGTCCTGG
CTGTGGATGCCTCCCTTTGGTTGATGCAGTGTCGGAAGGAGAGCACATAT
CTCCACGACAAAAAGCACATCAAAGTGGTGTTCGAGCGCGTGATTCATTA
TTTGCGACTTGGTGCCCTGCCTGTCCTGGTCTTTGAGGGGTACACCCCCC
CGGCCAAGCAAACAAAAATGGAGCGCCGTCGTAAGACGATGTGGAAAGGC
ATGTCGTCTCCGAGCCAGCCTTACGTGCCGCGCTGTAACCACTCCCTTAT
GCAGCTGGGAGAGGACGTGAAAAAATTGTTAGATGCGATGGGATTGCCTT
ACGAGCAGGCAGGCGGCGAAGGGGAGGCTCTCTGTGCCGTGATGTATTGT
CAAGGCCTGGTGGACTCGGTAGTCTCGAGCGACGGCGATGCCCTGCTGTA
CGGGGCCCGCCGCCTGTACAAGGACCTGCGTCTGCACGCGAGGCTGCTTC
CGGACAATCACTCCGGAGAGTGGGTGGCCCTGGAGAATGATGATGGTGTG
TCGATCTCAGGGCAAGACCTGATGGCAGTGTGCCTCCTGGCTGGGTGCGA
CTTCCTCTCGGAAGGCCTCCGACAGGTCGGGTGCATAGGGGCATGGGGAG
TAGTGCGTGCCCTAAAGGCCCGACGGGCGCGAATCCTACAGCAGGGGGAG
GGTAGTGCCGCTAACATCGCGCTTGGAAGCAGAAGCTTGGTGGACTTGCT
GCGCTCCTGTCTATCGGAAGCGGTGGATGAGCCGATGACGGCGCCTGCAG
CAGGCGCATGCGTGACCTGTCGAAGTCATCCGCATGTAGAGGCAGGAAAG
AAAGTGCGCGGTACAAAGGGGTGCCAGAAGTGTGGGATGCTGCCCAAGGT
GAGGGGCGGCGTAGGAGAGGGAGGCTGCAATCGGGGACAGACGCAGGCCG
ATGCCGTGGGCGTTGGAGGCGTGTTTGTTGGGAATGACAGCCCCTGTCTG
TGTATGTCTTGCCAGCGGCGAGACGATGGGACACTCCAATTACTGGCCAA
GCGGGCAAGAGACGGCCAGGGAGGTCTGCAGGGCTATCTGCGGAAGTTTG
ACGAGGCACACGCCGCCTACAAAGCGGCCTCCGATGCGGCCATGGATTTG
ACCAGAAGTCTTCGAAGTGCCGGGGACGAGGCGACTGGCACGGACGGAAG
CGCACCGGGAAAGTGTCCAGCCCATTTTGAGTGGCGTAGGCGACCGGATG
TTGCGCTTCTCAAGGAGATGCTGGAGCCCGTCTACGGGAAGGGAGGGATG
GGAGGGAGGAACCTGGCGCGGAAGCTCCTGCCATTGCTCCTAGAGTGGGA
CGCACGGCACATCGGCGACGTACTGGGGCCGGGCCCTGACGCCCAGGAGG
TGGGTGCGAGAGAGCTAGCCCTTGCGACCCACCAAGGGTATCTGTTCGCG
CCCATCCGCATCGATCGGGTTTGCCAGATCGGTGGCGGCGGCTGGCGCTA
CGCGATGGATTGGGTAGCTCTTCGCCCGGAGGCGGAATCTCTGATTGCGG
AAGCGGCAGAGGGCATGCAGAGAGCAGCGGGCAGCCAATGGACCAGTCAA
GGGGGAGGGAAAATGTTGCCATCCCTGAAGGAGGTTCTGAGCGAGGGCCG
CGGCAGCCTCCGGCGCAGCCTAGTAGAAGCCAAGTATCCTTACCTTGTGA
GGGCGTTCGAGCAAAGGTGCCAGAGGGTACGACCGTCCCGGCCGCGGAAG
GAGCAAGGCCGTGACGCACTTGCCTCCGTGATCAGGCCGGAGGGCAGGTT
GGAGCACTTTTTCTCGCCCCTCAAAGCAGCGTTAATTCCACCTTCGTCCC
CATCACAGCCCCCCGGCGTTCAGTCCTCCGAGTCGCCATCAAAATCCTCA
CCGCGGGTCACTCCCACATTGTCTCATACTGACTTCCACGTAGAGTCTCC
GGTCTCTGCGCCTTCGCCCACTGTCCGACTCGGCACCAGGTCCTCCCATT
CGTGCTGTGTCCCGCGGGCTCCGCGCAAGGGCAAGCCCCCGGATCTTTTG
GACAAGGGAATTGAAAGGCAGGGCCTTGGAGGGAGGAGCGCGAGGAGAAA
TCTCGACCATTTTTTCAAGCGCGCGCGCTTCGACGACCACCCGGATCCCT
CGGACTCCTCCGTGCACGGCGCTCCCCGCCAAATCCATGTTGACATCAGG
TGCGTCGACGAGGAGGAGACGGATGGCGAAGACTTGCTGATAGACTTGAC
TGCAGACCCTTTACCGCACTTCTCTGAGGTCGCGGAATTTGCTACCACAG
AGGAGGACTGGGCGGTGCTTAATATCACTGGGACTGATGAGAACATCGTA
GACGTGTCCAAGGAGCGACGTATGCGGCGAATCGATTGCTAG

Synonyms

Publications