EWM27203.1, cds3465 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|585109383|gb|EWM27203.1| (flap endonuclease 1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 1659.43 bits (4296), Expect = 0.000e+0 Identity = 813/813 (100.00%), Postives = 813/813 (100.00%), Query Frame = 0
Query: 1 MGISGLWNFLRDQGHVRNLDGVELARHVENKVLAVDASLWLMQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAGKKVRGTKGCQKCGMLPKVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAYKAASDAAMDLTRSLRSAGDEATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLARKLLPLLLEWDARHIGDVLGPGPDAQEVGARELALATHQGYLFAPIRIDRVCQIGGGGWRYAMDWVALRPEAESLIAEAAEGMQRAAGSQWTSQGGGKMLPSLKEVLSEGRGSLRRSLVEAKYPYLVRAFEQRCQRVRPSRPRKEQGRDALASVIRPEGRLEHFFSPLKAALIPPSSPSQPPGVQSSESPSKSSPRVTPTLSHTDFHVESPVSAPSPTVRLGTRSSHSCCVPRAPRKGKPPDLLDKGIERQGLGGRSARRNLDHFFKRARFDDHPDPSDSSVHGAPRQIHVDIRCVDEEETDGEDLLIDLTADPLPHFSEVAEFATTEEDWAVLNITGTDENIVDVSKERRMRRIDC 813
MGISGLWNFLRDQGHVRNLDGVELARHVENKVLAVDASLWLMQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAGKKVRGTKGCQKCGMLPKVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAYKAASDAAMDLTRSLRSAGDEATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLARKLLPLLLEWDARHIGDVLGPGPDAQEVGARELALATHQGYLFAPIRIDRVCQIGGGGWRYAMDWVALRPEAESLIAEAAEGMQRAAGSQWTSQGGGKMLPSLKEVLSEGRGSLRRSLVEAKYPYLVRAFEQRCQRVRPSRPRKEQGRDALASVIRPEGRLEHFFSPLKAALIPPSSPSQPPGVQSSESPSKSSPRVTPTLSHTDFHVESPVSAPSPTVRLGTRSSHSCCVPRAPRKGKPPDLLDKGIERQGLGGRSARRNLDHFFKRARFDDHPDPSDSSVHGAPRQIHVDIRCVDEEETDGEDLLIDLTADPLPHFSEVAEFATTEEDWAVLNITGTDENIVDVSKERRMRRIDC
Sbjct: 1 MGISGLWNFLRDQGHVRNLDGVELARHVENKVLAVDASLWLMQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAGKKVRGTKGCQKCGMLPKVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAYKAASDAAMDLTRSLRSAGDEATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLARKLLPLLLEWDARHIGDVLGPGPDAQEVGARELALATHQGYLFAPIRIDRVCQIGGGGWRYAMDWVALRPEAESLIAEAAEGMQRAAGSQWTSQGGGKMLPSLKEVLSEGRGSLRRSLVEAKYPYLVRAFEQRCQRVRPSRPRKEQGRDALASVIRPEGRLEHFFSPLKAALIPPSSPSQPPGVQSSESPSKSSPRVTPTLSHTDFHVESPVSAPSPTVRLGTRSSHSCCVPRAPRKGKPPDLLDKGIERQGLGGRSARRNLDHFFKRARFDDHPDPSDSSVHGAPRQIHVDIRCVDEEETDGEDLLIDLTADPLPHFSEVAEFATTEEDWAVLNITGTDENIVDVSKERRMRRIDC 813
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|303277071|ref|XP_003057829.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226460486|gb|EEH57780.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 160.999 bits (406), Expect = 3.631e-37 Identity = 169/629 (26.87%), Postives = 259/629 (41.18%), Query Frame = 0
Query: 1 MGISGLWNFLRDQGHVRNLDGVE---------LARHVENKVLAVDASLWLMQCRKEST----YLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGE-----WV----ALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAG--KKVRGTKGCQKCGMLPKVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAYKAASDAAMDLTRSLRSAGDEATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLARKLLPLLLEWDARHIGDVLGPGPDAQEVGARELALATHQGYLFAPIRIDRVCQIGGGGWRYAMDWVALRPEAESLIAEAAEGMQRAAGSQWTSQGGGKMLPSLKEVLSEGRG------------------SLRRSLVEAKYPYLVRAFE 587
M ++ LW+ L D G V +D + + VE KVLAVD + W+ Q + + + + KVVFER ++LR G +P+ V +G PP K +M++R G +LG+ + L A+GLP +A GE EA CA M GLVD +SDGDALL+GAR +K ++L A P+ E W+ L D+ +S + L G D+ +G ++VG A VV+ L A AR ++ + + + + +L L + L D+ + A C C H G KK R GC+ CG E GC V D PC C D + + +RA+ +G + G ++ +A+A + + AA+ R + +A G S W RRPD A + E+L + R KLLP+LLEWD R P + A +A H+G G WR+ ++ A+ P E++ A + +A + + GG + + + +G G S+R L+ +P LV AFE
Sbjct: 1 MTVTNLWSLLNDHGVVEVIDASDASDENAHPSIRDRVEGKVLAVDLAEWIFQATSQPATAELFTPEGQVAKVVFERAANWLRHGCIPIGVIDGVPPPEKLARMKQRHGMGATGCGG----------GVFGRLGDVAARTLRALGLPAVEAPGEAEATCAAMNAAGLVDGCATSDGDALLFGARVQFKTIKLFAD-APEQSRIERCEASWLRETMRLPGDEHEGVSDALVALALLAGG-DYDPDGAKRVGSALASRVVKGLAAEDAR--ERRKSGSPGLRPSTTTLPRRLDAFLEAPADDDLEAIGKRGCTGCVRCKHEGGGKCKKQRHVHGCEACGT---------ESGC----------------VERDGPCECAFHSTEDLRWMDKVRRRAKATEGYVGGSFQRAAKAYAKQASIAAAALPRARDVAAARRGGGGGSFS-------RLAWTRRPDTAAVSEIL----ALCDIPDRRAREKLLPVLLEWDIRAAAVTGAPSAGLEFTAASITKVAGHRGV--------------GRRWRHLLEIAAVDPN-EAVNAARLKAQLKAKRAAANTPGGAREIALDDDDDEDGLGASEIARDLEFLSHHRPHRSVRMGLIREAFPELVAAFE 564
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|255072853|ref|XP_002500101.1| (predicted protein [Micromonas commoda] >gi|226515363|gb|ACO61359.1| predicted protein [Micromonas commoda]) HSP 1 Score: 152.525 bits (384), Expect = 2.091e-34 Identity = 198/649 (30.51%), Postives = 274/649 (42.22%), Query Frame = 0
Query: 8 NFLRDQGHVRNLDGVE---------LARHVENKVLAVDASLWLMQ-CRKES---TYLHD--------KKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPD--------NHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRAL---KARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAGKKVRGTKGCQKCGMLP-KVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAYKAASDAAMDLTRSLRSAGD----EATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLARKLLPLLLEWDARHIGDVLGPGPDAQEVG-ARELALATHQGYLFAPIRIDRVCQIGGGG----WRYAMDWVALRPEAESLIAEAAEGMQRAAGSQWTSQGGGKMLPSLKE-----VLSEG---RGSLRRSLVEAKYPYLVRAFEQRCQRVR--PSRPRKEQGR 604
L ++G + +DG + + V+ K LAVD SLW++Q C +++ Y D K KVVFER ++YLR G +PV V +G P K + R W + + + GE ++L A+GLP +A GE EA CAVM G+VD V+SDGD+LL+GAR ++K LRL D G+ + L +D V L A+ LL G D+ G + VG A VV+AL +ARR R G RSL L + L+ A D P +EA K G C+ G L KV+ V GC+ T A V GV C C R D+ L + +RA GY R F +A Y A A D +L A D E DG WRRRPDVA L+E++E Y + R KLLP+L+EWD + L D V R L +G F ++R+ ++ G WRY ++ + P + AA G AAG G + P+ E +G R S+R SLV P+LV F+ + + PS P K + +
Sbjct: 35 KLLDEEGAIVRVDGSDEDDPDAQRIIRESVDGKALAVDLSLWIIQACTQQALDEVYNEDLGFDDPDASKTAKVVFERALNYLRHGCVPVGVIDGQAPWQKLGALRAR----WGAHAGGGG-------GAFGRCGEVALEVLRALGLPGVEAPGEAEATCAVMDSMGIVDGCVTSDGDSLLFGARTVFKTLRLSQNDQRDLFMERVEAADVGKRLMLGDD--VEHVAPALTALALLTGGDYDLTGAKNVGGTKALLVVKALAKDEARRTRAEPGGRDRR------QRSLPARLDAFLASAPD-----------------PTIEALDKCTGCARCKHDGCLKNKVKNHV--RGCSECGTDAGCVERDGV------ECECPFHARADERWLHKVRERA----NATDGYARSFRDAARGYAA---QARDAEEALGDASDVEWVERAENDGDEFDSF-RKMRWRRRPDVAALQEIME-TYCQ--WEPRRTREKLLPVLVEWDMKAARRALRRVEDPSTVDPGRRWELLRRRGVEFV---VERIAKVSGNNKAPPWRYLLEVNSADPAHWAAWQRAATG-DPAAGESAPKGGTAVLPPNFHERGDDLAFLKGLAQRRSVRMSLVRETCPHLVARFDAGGSKAKSAPSTPAKSKSK 624
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|1004146487|gb|KXZ54462.1| (hypothetical protein GPECTOR_4g1013 [Gonium pectorale]) HSP 1 Score: 137.887 bits (346), Expect = 1.510e-29 Identity = 162/602 (26.91%), Postives = 244/602 (40.53%), Query Frame = 0
Query: 27 HVENKVLAVDASLWLMQCR-----KESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLH---------ARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAGKKVRGTKGCQKCGMLPKVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAYKAASDAAMDLTRSLRSAGDEATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLA-------RKLLPLLLEWDARHIGDVLGPGPDAQEVGARELALATHQGYLFAPIRIDRVCQIGGGGWRYAMDWVAL----RPEAESLIAEAAEGMQRAAGSQWTSQGGGKMLPSLKEVLSEGRGSLRRSLVEAKYPYL--VRAFEQRCQRVRPSRPRKE 601
+ KVLA+D S+W+ QC KE+ + + + R++ LR G PV V EG TP AK ++ +R ++ KG+ + H LG V +LLD +G+P+ A GE EA+CA + GL V+SD DALL+GA +Y++ RL R+ + L G +++ L AV L GCD+ G + VG A ++ +L GE +++ + LLR L E D +TA +C C++ H + G++ C +CG P C + +A+A G G F ++ M R GT Q A + LQ + + A A +A L R + F W RRPDV + +L P+ G L KL PLL+EWD R GP P A G E F P RI +V G W Y +++ L P+ E +A+ L + K V + +R+ LVE +P L +R E++ + +P R RK+
Sbjct: 37 ELSGKVLAIDTSVWIFQCSQQNDLKEAIFNEQARVLYTFHHRIVSLLRYGVTPVFVLEGDTPEAKMGRLNQR--SLAKGLGGLASGNRKGGRHD--SLGRKVVELLDELGVPHVDAPGEAEAMCAALVACGLASGAVTSDVDALLFGAGAVYRECRLSFDQPKMNELERVDAREAARRCFGLRGGGGCTLA---LRAVACLCGCDYSVNGGKGVGVKTAMDAIQ--------LLTVGEEDDSHV------IPALLRY-LREGPDPRVTA--LKSCTGCKTCGHEKHGRQP-----CPECGPGP----------C---RPKAEAAGCGCAFHRSEPQRKFMRVIARAVGTSQSFAAECSEA---LQAFESEAQRARTAAEA-------LKRRI-------------------GAFSWSRRPDVRGVYSLLHPLLGSTSSDPDKLLWTYGEVRDKLRPLLMEWDMRQ-----GPDPHASVRGLLE----------FRPRRIKQVASKDGEDWAYLIEFDRLPGVNTPDLEFDVAQ---------------------LSNSKLVKAR---HVRQCLVEQAWPQLLVLREEEEQAKLDKPKRSRKK 528
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|552835843|ref|XP_005849037.1| (hypothetical protein CHLNCDRAFT_143468 [Chlorella variabilis] >gi|307108696|gb|EFN56935.1| hypothetical protein CHLNCDRAFT_143468 [Chlorella variabilis]) HSP 1 Score: 131.724 bits (330), Expect = 9.258e-28 Identity = 150/552 (27.17%), Postives = 227/552 (41.12%), Query Frame = 0
Query: 1 MGISGLWNFLRDQG---HVRNLDGVELA---RHVENKVLAVDASLWLMQCRKESTYL----HDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHA---RLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEP--MTAPAAGACVTCRSHPHVEAGKKVRGTKGCQK--CGMLPKVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAY----KAASDAAMDLTRSLRSAGDEATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLARKLLPLLLEWDARHIGDVLGPGPDAQEVGARELALATHQGYLFAPIRIDRVCQIGGGGWRYAMDWVALRPEAESL 531
MG++ LW L + H R ELA + V+ +AVD S WLMQ ++ L +++ +KV FER + +LR G LPV+V EG P K+ + R + SQ + +LG+ + +L+ +GLP A GE EA+CA + G D+ + DGDALLYGA L ++L R G + L + +L+G D+ EG + VG G V AR L +G G+AA ++L L+E V P A C C+S H + R T GC G K++ G+ C D GG PC C ++ + ++ + +R R L EA AA + A +AA + + L G G APG+ W RP V + + ++ + + KLLP+LLEWD + G G A+ V R + + G ++ ++ G WRY + W + + E L
Sbjct: 1 MGVTALWQLLGAEQVVEHYRGASADELAHIVQAVDGAAVAVDLSPWLMQADQQQALLPHFSKEERCMKVAFERAVQWLRHGCLPVIVVEGRPPQEKRAAQQARFASRNGYAGGGSQ----QGASQFQRLGQTLGMMLEELGLPVFYAPGEAEAVCAALSAAGCCDACATPDGDALLYGAESLLHTVKLQTGQPRECELRRVGMAAVRRRLGLRRGGTKALGVLAMLSGSDYDLEGAQGVGSKGGLAV--------ARYLLRG-GAAAGQGEPQEDDSEVLER-LAELVQRPPRHDLLALTKCTGCQSCGHEASASGRRPTLGCFSPGSGRAGKIKRHTGKNPCRCCTPAED----GGCQDAPCGPCRCAFHRQETERRVERILERVRRKPSFLA-------EAQAAVGVFERQAREAAAYVEQRL--------GELGGAPGR---KLHWLHRPRVRAVFDYIDARRRQMVWDLPAVRSKLLPVLLEWDLQQEGRGEGEHGPAEGVEFRAVEVQKVHGL------KSKIDELTGAHWRYVLRWERVDSDVEGL 510
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|926791679|ref|XP_013904313.1| (putative Flap endonuclease GEN [Monoraphidium neglectum] >gi|761975319|gb|KIZ05294.1| putative Flap endonuclease GEN [Monoraphidium neglectum]) HSP 1 Score: 129.798 bits (325), Expect = 2.109e-27 Identity = 107/332 (32.23%), Postives = 151/332 (45.48%), Query Frame = 0
Query: 1 MGISGLWNFLRDQGHVRNLDGVELARH------VENKVLAVDASLWLMQCRKESTYLHDKKH-----IKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRL------HARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAGK----KVRGTKGCQKC 311
MG+ LW L G V LDG + A+H +E +AVD S WL+Q + + + +KVVF+R IH+LR G LP+ V EG TP AK K+ R+R G + + LG V +LLD +G+P+ QA GEGEA CA + G ++D DALL+GA +Y+ L L ++ + L G + Q L+AV LAG D+ G +VG + A VR L R E +A G+ +D L C + PA+G C+ H E G+ K G +GC +C
Sbjct: 1 MGVKHLWRTLEKGGAVELLDGGDAAQHCEILDELEGAAVAVDLSAWLVQAQTQPALAQNYDSDFACALKVVFDRTIHWLRHGCLPLFVIEGNTPEAKLEKL-RQRCIATYGPGAGQRRVGNNAGSRFSSLGRKVAELLDCLGVPWVQAEGEGEATCAALNMCGWAQGCYTADVDALLFGAVTVYRTLSLSTANPRQTQMARCRRAAVQRVLRLQQGGT---QALIAVAQLAGGDYDVAGADRVGDVLAVAAVRCLLKDRQSDADVLELLQQALARGADPHLDSLTKCTGGRMTARGGTPASGVAQGCKCCGH-EGGRKNAIKKHGKEGCAEC 327
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|291242835|ref|XP_002741315.1| (PREDICTED: flap endonuclease GEN homolog 1-like [Saccoglossus kowalevskii]) HSP 1 Score: 122.479 bits (306), Expect = 1.041e-26 Identity = 79/243 (32.51%), Postives = 129/243 (53.09%), Query Frame = 0
Query: 1 MGISGLWNFL---RDQGHVRNLDGVELARHVENKVLAVDASLWLMQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTM--WKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRAL 238
MG+ LW L +D + +L G + +AVD S W+ C + K H++ +F RV++ RL PV V +G P K ++ +R K +P + R +Q + KLLD +G+PY QA GE EA+CA++ +GLVD V + DGDA LYGA+++YK+L + +H + L+ ++ ++++ L+A+ LL GCD+LS+G+ VG A ++ +L
Sbjct: 1 MGVKTLWVVLEPVKDPTPLEDLKG---------QTIAVDLSSWI--CESIAAVNAFKPHLRNLFYRVVNLSRLNIQPVFVIDGDPPELKSNELVKRAHIQGDSKNKHGEKKPGMQRTRLKTLQY--ECCKLLDVLGVPYIQATGEAEAMCALLNKEGLVDGVFTEDGDAFLYGAKKVYKNLTAGSN---GSHVDVYDMLDIEEKLTLNRNKLIAMALLMGCDYLSDGVPSVGKTNATQLMHSL 227
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|762100115|ref|XP_011432504.1| (PREDICTED: flap endonuclease GEN homolog 1 [Crassostrea gigas] >gi|1139808395|ref|XP_019924302.1| PREDICTED: flap endonuclease GEN homolog 1 [Crassostrea gigas]) HSP 1 Score: 124.79 bits (312), Expect = 1.565e-25 Identity = 79/244 (32.38%), Postives = 131/244 (53.69%), Query Frame = 0
Query: 1 MGISGLWNFLRD-QGHVRNLDGVELARHVENKVLAVDASLWL--MQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMW---KGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRAL 238
MG++ LW L Q H + ++ + LAVD S+W+ QC K+ + K +++ +F R+ H L+LG V V EG P KQ M +R++T + K + Q N L + E +LD +G+PY + GE EA CA + G+VD+ +++DGDA LYGAR +Y++ ++ + D H + + ++ + +S + L+A+ LL GCD+L +G+ VG A ++ AL
Sbjct: 1 MGVTNLWQVLEPVQAH-------QTLSSLKGQTLAVDLSIWVCETQCVKQMQGVVSKPYLRNLFFRISHLLQLGVHLVFVIEGRAPDLKQQVMAKRQETRFPQRKAVGGQRQGGRRNFNACLKECCE----MLDYLGVPYVHSPGEAEATCAALNASGVVDACLTNDGDAFLYGARTVYRNFTMNTK---DPHVECYCMTDVEERLGLSREKLVAMALLLGCDYLPKGVPGVGVERAIKMMNAL 230
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|405969706|gb|EKC34660.1| (Flap endonuclease GEN-like protein 1 [Crassostrea gigas]) HSP 1 Score: 124.405 bits (311), Expect = 1.734e-25 Identity = 79/244 (32.38%), Postives = 131/244 (53.69%), Query Frame = 0
Query: 1 MGISGLWNFLRD-QGHVRNLDGVELARHVENKVLAVDASLWL--MQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMW---KGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRAL 238
MG++ LW L Q H + ++ + LAVD S+W+ QC K+ + K +++ +F R+ H L+LG V V EG P KQ M +R++T + K + Q N L + E +LD +G+PY + GE EA CA + G+VD+ +++DGDA LYGAR +Y++ ++ + D H + + ++ + +S + L+A+ LL GCD+L +G+ VG A ++ AL
Sbjct: 1 MGVTNLWQVLEPVQAH-------QTLSSLKGQTLAVDLSIWVCETQCVKQMQGVVSKPYLRNLFFRISHLLQLGVHLVFVIEGRAPDLKQQVMAKRQETRFPQRKAVGGQRQGGRRNFNACLKECCE----MLDYLGVPYVHSPGEAEATCAALNASGVVDACLTNDGDAFLYGARTVYRNFTMNTK---DPHVECYCMTDVEERLGLSREKLVAMALLLGCDYLPKGVPGVGVERAIKMMNAL 230
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|1084296237|ref|XP_018651216.1| (putative xp-G/rad2 DNA repair endonuclease family member [Schistosoma mansoni] >gi|360043194|emb|CCD78606.1| putative xp-G/rad2 DNA repair endonuclease family member [Schistosoma mansoni]) HSP 1 Score: 114.39 bits (285), Expect = 2.422e-24 Identity = 70/241 (29.05%), Postives = 128/241 (53.11%), Query Frame = 0
Query: 1 MGISGLWNFLRDQGHVRNLDGVELARHVENKVLAVDASLWLMQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNH-SLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKA 240
MG+ GLW L R L + +AVD S+W+ C +S H++ +F R++ LR LP+ V +G P K M++R++ W G + + P N ++ ++ +LL++ G+P+ Q+ GE EA+CA + LVD+ +++DGDA LYGA +Y+ + +R D+ + D ++++ DL+ + +L GCD+ + G+ ++G +GA ++ +LK+
Sbjct: 1 MGVHGLWGILSSVQEYRPLSKIGCDS------VAVDLSIWI--CGDKSITPLPALHLRNLFFRLVGLLRQNTLPIAVLDGVAPSLKSDVMKQRQQK-WTGKITTQKCTKPNLNRIRFSKVSQECIQLLNSFGIPWVQSPGEAEAMCAFLNSNKLVDACITNDGDAFLYGAETVYRHFSMDSR---DSSVCVFHMHRILDVLNLTKCDLVLLGILLGCDYWASGVSRLGPVGALRLISSLKS 229 The following BLAST results are available for this feature:
BLAST of EWM27203.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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