EWM27203.1, cds3465 (CDS) Nannochloropsis gaditana

Overview
NameEWM27203.1
Unique Namecds3465
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:498235..500676 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27203.1
Productflap endonuclease 1-like protein
Orig transcript idgnl|cribi|Naga_100010g27.6173.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:498235..500676 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR029060PIN_domain-like
IPR006085XPG_DNA_repair_N
IPR006086XPG-I_dom
IPR006084XPG/Rad2
Homology
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|585109383|gb|EWM27203.1| (flap endonuclease 1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 1659.43 bits (4296), Expect = 0.000e+0
Identity = 813/813 (100.00%), Postives = 813/813 (100.00%), Query Frame = 0
Query:    1 MGISGLWNFLRDQGHVRNLDGVELARHVENKVLAVDASLWLMQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAGKKVRGTKGCQKCGMLPKVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAYKAASDAAMDLTRSLRSAGDEATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLARKLLPLLLEWDARHIGDVLGPGPDAQEVGARELALATHQGYLFAPIRIDRVCQIGGGGWRYAMDWVALRPEAESLIAEAAEGMQRAAGSQWTSQGGGKMLPSLKEVLSEGRGSLRRSLVEAKYPYLVRAFEQRCQRVRPSRPRKEQGRDALASVIRPEGRLEHFFSPLKAALIPPSSPSQPPGVQSSESPSKSSPRVTPTLSHTDFHVESPVSAPSPTVRLGTRSSHSCCVPRAPRKGKPPDLLDKGIERQGLGGRSARRNLDHFFKRARFDDHPDPSDSSVHGAPRQIHVDIRCVDEEETDGEDLLIDLTADPLPHFSEVAEFATTEEDWAVLNITGTDENIVDVSKERRMRRIDC 813
            MGISGLWNFLRDQGHVRNLDGVELARHVENKVLAVDASLWLMQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAGKKVRGTKGCQKCGMLPKVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAYKAASDAAMDLTRSLRSAGDEATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLARKLLPLLLEWDARHIGDVLGPGPDAQEVGARELALATHQGYLFAPIRIDRVCQIGGGGWRYAMDWVALRPEAESLIAEAAEGMQRAAGSQWTSQGGGKMLPSLKEVLSEGRGSLRRSLVEAKYPYLVRAFEQRCQRVRPSRPRKEQGRDALASVIRPEGRLEHFFSPLKAALIPPSSPSQPPGVQSSESPSKSSPRVTPTLSHTDFHVESPVSAPSPTVRLGTRSSHSCCVPRAPRKGKPPDLLDKGIERQGLGGRSARRNLDHFFKRARFDDHPDPSDSSVHGAPRQIHVDIRCVDEEETDGEDLLIDLTADPLPHFSEVAEFATTEEDWAVLNITGTDENIVDVSKERRMRRIDC
Sbjct:    1 MGISGLWNFLRDQGHVRNLDGVELARHVENKVLAVDASLWLMQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAGKKVRGTKGCQKCGMLPKVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAYKAASDAAMDLTRSLRSAGDEATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLARKLLPLLLEWDARHIGDVLGPGPDAQEVGARELALATHQGYLFAPIRIDRVCQIGGGGWRYAMDWVALRPEAESLIAEAAEGMQRAAGSQWTSQGGGKMLPSLKEVLSEGRGSLRRSLVEAKYPYLVRAFEQRCQRVRPSRPRKEQGRDALASVIRPEGRLEHFFSPLKAALIPPSSPSQPPGVQSSESPSKSSPRVTPTLSHTDFHVESPVSAPSPTVRLGTRSSHSCCVPRAPRKGKPPDLLDKGIERQGLGGRSARRNLDHFFKRARFDDHPDPSDSSVHGAPRQIHVDIRCVDEEETDGEDLLIDLTADPLPHFSEVAEFATTEEDWAVLNITGTDENIVDVSKERRMRRIDC 813          
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|303277071|ref|XP_003057829.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226460486|gb|EEH57780.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 160.999 bits (406), Expect = 3.631e-37
Identity = 169/629 (26.87%), Postives = 259/629 (41.18%), Query Frame = 0
Query:    1 MGISGLWNFLRDQGHVRNLDGVE---------LARHVENKVLAVDASLWLMQCRKEST----YLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGE-----WV----ALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAG--KKVRGTKGCQKCGMLPKVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAYKAASDAAMDLTRSLRSAGDEATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLARKLLPLLLEWDARHIGDVLGPGPDAQEVGARELALATHQGYLFAPIRIDRVCQIGGGGWRYAMDWVALRPEAESLIAEAAEGMQRAAGSQWTSQGGGKMLPSLKEVLSEGRG------------------SLRRSLVEAKYPYLVRAFE 587
            M ++ LW+ L D G V  +D  +         +   VE KVLAVD + W+ Q   +      +  + +  KVVFER  ++LR G +P+ V +G  PP K  +M++R      G                 +LG+   + L A+GLP  +A GE EA CA M   GLVD   +SDGDALL+GAR  +K ++L A   P+    E     W+     L  D+   +S   +    L  G D+  +G ++VG   A  VV+ L A  AR  ++ +  +  +   + +L   L + L    D+ + A     C  C    H   G  KK R   GC+ CG          E GC                V  D PC C      D   +  + +RA+  +G + G  ++  +A+A   + + AA+   R + +A     G   S          W RRPD A + E+L        +  R    KLLP+LLEWD R       P    +   A    +A H+G               G  WR+ ++  A+ P  E++ A   +   +A  +   + GG + +    +   +G G                  S+R  L+   +P LV AFE
Sbjct:    1 MTVTNLWSLLNDHGVVEVIDASDASDENAHPSIRDRVEGKVLAVDLAEWIFQATSQPATAELFTPEGQVAKVVFERAANWLRHGCIPIGVIDGVPPPEKLARMKQRHGMGATGCGG----------GVFGRLGDVAARTLRALGLPAVEAPGEAEATCAAMNAAGLVDGCATSDGDALLFGARVQFKTIKLFAD-APEQSRIERCEASWLRETMRLPGDEHEGVSDALVALALLAGG-DYDPDGAKRVGSALASRVVKGLAAEDAR--ERRKSGSPGLRPSTTTLPRRLDAFLEAPADDDLEAIGKRGCTGCVRCKHEGGGKCKKQRHVHGCEACGT---------ESGC----------------VERDGPCECAFHSTEDLRWMDKVRRRAKATEGYVGGSFQRAAKAYAKQASIAAAALPRARDVAAARRGGGGGSFS-------RLAWTRRPDTAAVSEIL----ALCDIPDRRAREKLLPVLLEWDIRAAAVTGAPSAGLEFTAASITKVAGHRGV--------------GRRWRHLLEIAAVDPN-EAVNAARLKAQLKAKRAAANTPGGAREIALDDDDDEDGLGASEIARDLEFLSHHRPHRSVRMGLIREAFPELVAAFE 564          
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|255072853|ref|XP_002500101.1| (predicted protein [Micromonas commoda] >gi|226515363|gb|ACO61359.1| predicted protein [Micromonas commoda])

HSP 1 Score: 152.525 bits (384), Expect = 2.091e-34
Identity = 198/649 (30.51%), Postives = 274/649 (42.22%), Query Frame = 0
Query:    8 NFLRDQGHVRNLDGVE---------LARHVENKVLAVDASLWLMQ-CRKES---TYLHD--------KKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPD--------NHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRAL---KARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAGKKVRGTKGCQKCGMLP-KVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAYKAASDAAMDLTRSLRSAGD----EATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLARKLLPLLLEWDARHIGDVLGPGPDAQEVG-ARELALATHQGYLFAPIRIDRVCQIGGGG----WRYAMDWVALRPEAESLIAEAAEGMQRAAGSQWTSQGGGKMLPSLKE-----VLSEG---RGSLRRSLVEAKYPYLVRAFEQRCQRVR--PSRPRKEQGR 604
              L ++G +  +DG +         +   V+ K LAVD SLW++Q C +++    Y  D         K  KVVFER ++YLR G +PV V +G  P  K   +  R    W   +            +  + GE   ++L A+GLP  +A GE EA CAVM   G+VD  V+SDGD+LL+GAR ++K LRL      D           G+ + L +D  V      L A+ LL G D+   G + VG   A  VV+AL   +ARR R    G           RSL   L + L+ A D                 P +EA  K  G   C+  G L  KV+  V   GC+   T A  V   GV       C C    R D+  L  + +RA        GY R F +A   Y A    A D   +L  A D    E    DG           WRRRPDVA L+E++E  Y +     R    KLLP+L+EWD +     L    D   V   R   L   +G  F    ++R+ ++ G      WRY ++  +  P   +    AA G   AAG      G   + P+  E        +G   R S+R SLV    P+LV  F+    + +  PS P K + +
Sbjct:   35 KLLDEEGAIVRVDGSDEDDPDAQRIIRESVDGKALAVDLSLWIIQACTQQALDEVYNEDLGFDDPDASKTAKVVFERALNYLRHGCVPVGVIDGQAPWQKLGALRAR----WGAHAGGGG-------GAFGRCGEVALEVLRALGLPGVEAPGEAEATCAVMDSMGIVDGCVTSDGDSLLFGARTVFKTLRLSQNDQRDLFMERVEAADVGKRLMLGDD--VEHVAPALTALALLTGGDYDLTGAKNVGGTKALLVVKALAKDEARRTRAEPGGRDRR------QRSLPARLDAFLASAPD-----------------PTIEALDKCTGCARCKHDGCLKNKVKNHV--RGCSECGTDAGCVERDGV------ECECPFHARADERWLHKVRERA----NATDGYARSFRDAARGYAA---QARDAEEALGDASDVEWVERAENDGDEFDSF-RKMRWRRRPDVAALQEIME-TYCQ--WEPRRTREKLLPVLVEWDMKAARRALRRVEDPSTVDPGRRWELLRRRGVEFV---VERIAKVSGNNKAPPWRYLLEVNSADPAHWAAWQRAATG-DPAAGESAPKGGTAVLPPNFHERGDDLAFLKGLAQRRSVRMSLVRETCPHLVARFDAGGSKAKSAPSTPAKSKSK 624          
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|1004146487|gb|KXZ54462.1| (hypothetical protein GPECTOR_4g1013 [Gonium pectorale])

HSP 1 Score: 137.887 bits (346), Expect = 1.510e-29
Identity = 162/602 (26.91%), Postives = 244/602 (40.53%), Query Frame = 0
Query:   27 HVENKVLAVDASLWLMQCR-----KESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLH---------ARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAGKKVRGTKGCQKCGMLPKVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAYKAASDAAMDLTRSLRSAGDEATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLA-------RKLLPLLLEWDARHIGDVLGPGPDAQEVGARELALATHQGYLFAPIRIDRVCQIGGGGWRYAMDWVAL----RPEAESLIAEAAEGMQRAAGSQWTSQGGGKMLPSLKEVLSEGRGSLRRSLVEAKYPYL--VRAFEQRCQRVRPSRPRKE 601
             +  KVLA+D S+W+ QC      KE+ +    + +     R++  LR G  PV V EG TP AK  ++ +R  ++ KG+   +        H    LG  V +LLD +G+P+  A GE EA+CA +   GL    V+SD DALL+GA  +Y++ RL           R+     +     L    G +++   L AV  L GCD+   G + VG   A   ++        +L  GE   +++      +  LLR  L E  D  +TA    +C  C++  H + G++      C +CG  P          C   + +A+A G G  F  ++     M    R  GT Q  A    +    LQ +  +   A  A +A       L R +                     F W RRPDV  +  +L P+ G        L         KL PLL+EWD R      GP P A   G  E          F P RI +V    G  W Y +++  L     P+ E  +A+                     L + K V +     +R+ LVE  +P L  +R  E++ +  +P R RK+
Sbjct:   37 ELSGKVLAIDTSVWIFQCSQQNDLKEAIFNEQARVLYTFHHRIVSLLRYGVTPVFVLEGDTPEAKMGRLNQR--SLAKGLGGLASGNRKGGRHD--SLGRKVVELLDELGVPHVDAPGEAEAMCAALVACGLASGAVTSDVDALLFGAGAVYRECRLSFDQPKMNELERVDAREAARRCFGLRGGGGCTLA---LRAVACLCGCDYSVNGGKGVGVKTAMDAIQ--------LLTVGEEDDSHV------IPALLRY-LREGPDPRVTA--LKSCTGCKTCGHEKHGRQP-----CPECGPGP----------C---RPKAEAAGCGCAFHRSEPQRKFMRVIARAVGTSQSFAAECSEA---LQAFESEAQRARTAAEA-------LKRRI-------------------GAFSWSRRPDVRGVYSLLHPLLGSTSSDPDKLLWTYGEVRDKLRPLLMEWDMRQ-----GPDPHASVRGLLE----------FRPRRIKQVASKDGEDWAYLIEFDRLPGVNTPDLEFDVAQ---------------------LSNSKLVKAR---HVRQCLVEQAWPQLLVLREEEEQAKLDKPKRSRKK 528          
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|552835843|ref|XP_005849037.1| (hypothetical protein CHLNCDRAFT_143468 [Chlorella variabilis] >gi|307108696|gb|EFN56935.1| hypothetical protein CHLNCDRAFT_143468 [Chlorella variabilis])

HSP 1 Score: 131.724 bits (330), Expect = 9.258e-28
Identity = 150/552 (27.17%), Postives = 227/552 (41.12%), Query Frame = 0
Query:    1 MGISGLWNFLRDQG---HVRNLDGVELA---RHVENKVLAVDASLWLMQCRKESTYL----HDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHA---RLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEP--MTAPAAGACVTCRSHPHVEAGKKVRGTKGCQK--CGMLPKVRGGVGEGGCNRGQTQADAVGVGGVFVGNDSPCLCMSCQRRDDGTLQLLAKRARDGQGGLQGYLRKFDEAHAAY----KAASDAAMDLTRSLRSAGDEATGTDGSAPGKCPAHFEWRRRPDVALLKEMLEPVYGKGGMGGRNLARKLLPLLLEWDARHIGDVLGPGPDAQEVGARELALATHQGYLFAPIRIDRVCQIGGGGWRYAMDWVALRPEAESL 531
            MG++ LW  L  +    H R     ELA   + V+   +AVD S WLMQ  ++   L     +++ +KV FER + +LR G LPV+V EG  P  K+   + R  +        SQ    +      +LG+ +  +L+ +GLP   A GE EA+CA +   G  D+  + DGDALLYGA  L   ++L     R       G               + L  + +L+G D+  EG + VG  G   V        AR L +G G+AA          ++L   L+E V  P      A   C  C+S  H  +    R T GC     G   K++   G+  C       D    GG       PC C   ++  +  ++ + +R R     L        EA AA     + A +AA  + + L        G  G APG+      W  RP V  + + ++    +       +  KLLP+LLEWD +  G   G    A+ V  R + +    G         ++ ++ G  WRY + W  +  + E L
Sbjct:    1 MGVTALWQLLGAEQVVEHYRGASADELAHIVQAVDGAAVAVDLSPWLMQADQQQALLPHFSKEERCMKVAFERAVQWLRHGCLPVIVVEGRPPQEKRAAQQARFASRNGYAGGGSQ----QGASQFQRLGQTLGMMLEELGLPVFYAPGEAEAVCAALSAAGCCDACATPDGDALLYGAESLLHTVKLQTGQPRECELRRVGMAAVRRRLGLRRGGTKALGVLAMLSGSDYDLEGAQGVGSKGGLAV--------ARYLLRG-GAAAGQGEPQEDDSEVLER-LAELVQRPPRHDLLALTKCTGCQSCGHEASASGRRPTLGCFSPGSGRAGKIKRHTGKNPCRCCTPAED----GGCQDAPCGPCRCAFHRQETERRVERILERVRRKPSFLA-------EAQAAVGVFERQAREAAAYVEQRL--------GELGGAPGR---KLHWLHRPRVRAVFDYIDARRRQMVWDLPAVRSKLLPVLLEWDLQQEGRGEGEHGPAEGVEFRAVEVQKVHGL------KSKIDELTGAHWRYVLRWERVDSDVEGL 510          
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|926791679|ref|XP_013904313.1| (putative Flap endonuclease GEN [Monoraphidium neglectum] >gi|761975319|gb|KIZ05294.1| putative Flap endonuclease GEN [Monoraphidium neglectum])

HSP 1 Score: 129.798 bits (325), Expect = 2.109e-27
Identity = 107/332 (32.23%), Postives = 151/332 (45.48%), Query Frame = 0
Query:    1 MGISGLWNFLRDQGHVRNLDGVELARH------VENKVLAVDASLWLMQCRKESTYLHDKKH-----IKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRL------HARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKARRARILQQGEGSAANIALGSRSLVDLLRSCLSEAVDEPMTAPAAGACVTCRSHPHVEAGK----KVRGTKGCQKC 311
            MG+  LW  L   G V  LDG + A+H      +E   +AVD S WL+Q + +     +        +KVVF+R IH+LR G LP+ V EG TP AK  K+ R+R     G  +  +            LG  V +LLD +G+P+ QA GEGEA CA +   G      ++D DALL+GA  +Y+ L L        ++     +     L    G +   Q L+AV  LAG D+   G  +VG + A   VR L   R       E     +A G+   +D L  C    +      PA+G    C+   H E G+    K  G +GC +C
Sbjct:    1 MGVKHLWRTLEKGGAVELLDGGDAAQHCEILDELEGAAVAVDLSAWLVQAQTQPALAQNYDSDFACALKVVFDRTIHWLRHGCLPLFVIEGNTPEAKLEKL-RQRCIATYGPGAGQRRVGNNAGSRFSSLGRKVAELLDCLGVPWVQAEGEGEATCAALNMCGWAQGCYTADVDALLFGAVTVYRTLSLSTANPRQTQMARCRRAAVQRVLRLQQGGT---QALIAVAQLAGGDYDVAGADRVGDVLAVAAVRCLLKDRQSDADVLELLQQALARGADPHLDSLTKCTGGRMTARGGTPASGVAQGCKCCGH-EGGRKNAIKKHGKEGCAEC 327          
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|291242835|ref|XP_002741315.1| (PREDICTED: flap endonuclease GEN homolog 1-like [Saccoglossus kowalevskii])

HSP 1 Score: 122.479 bits (306), Expect = 1.041e-26
Identity = 79/243 (32.51%), Postives = 129/243 (53.09%), Query Frame = 0
Query:    1 MGISGLWNFL---RDQGHVRNLDGVELARHVENKVLAVDASLWLMQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTM--WKGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRAL 238
            MG+  LW  L   +D   + +L G         + +AVD S W+  C   +     K H++ +F RV++  RL   PV V +G  P  K  ++ +R       K      +P + R     +Q   +  KLLD +G+PY QA GE EA+CA++  +GLVD V + DGDA LYGA+++YK+L   +     +H   +  L+ ++ ++++   L+A+ LL GCD+LS+G+  VG   A  ++ +L
Sbjct:    1 MGVKTLWVVLEPVKDPTPLEDLKG---------QTIAVDLSSWI--CESIAAVNAFKPHLRNLFYRVVNLSRLNIQPVFVIDGDPPELKSNELVKRAHIQGDSKNKHGEKKPGMQRTRLKTLQY--ECCKLLDVLGVPYIQATGEAEAMCALLNKEGLVDGVFTEDGDAFLYGAKKVYKNLTAGSN---GSHVDVYDMLDIEEKLTLNRNKLIAMALLMGCDYLSDGVPSVGKTNATQLMHSL 227          
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|762100115|ref|XP_011432504.1| (PREDICTED: flap endonuclease GEN homolog 1 [Crassostrea gigas] >gi|1139808395|ref|XP_019924302.1| PREDICTED: flap endonuclease GEN homolog 1 [Crassostrea gigas])

HSP 1 Score: 124.79 bits (312), Expect = 1.565e-25
Identity = 79/244 (32.38%), Postives = 131/244 (53.69%), Query Frame = 0
Query:    1 MGISGLWNFLRD-QGHVRNLDGVELARHVENKVLAVDASLWL--MQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMW---KGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRAL 238
            MG++ LW  L   Q H       +    ++ + LAVD S+W+   QC K+   +  K +++ +F R+ H L+LG   V V EG  P  KQ  M +R++T +   K +    Q      N  L +  E    +LD +G+PY  + GE EA CA +   G+VD+ +++DGDA LYGAR +Y++  ++ +   D H   +   + ++ + +S + L+A+ LL GCD+L +G+  VG   A  ++ AL
Sbjct:    1 MGVTNLWQVLEPVQAH-------QTLSSLKGQTLAVDLSIWVCETQCVKQMQGVVSKPYLRNLFFRISHLLQLGVHLVFVIEGRAPDLKQQVMAKRQETRFPQRKAVGGQRQGGRRNFNACLKECCE----MLDYLGVPYVHSPGEAEATCAALNASGVVDACLTNDGDAFLYGARTVYRNFTMNTK---DPHVECYCMTDVEERLGLSREKLVAMALLLGCDYLPKGVPGVGVERAIKMMNAL 230          
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|405969706|gb|EKC34660.1| (Flap endonuclease GEN-like protein 1 [Crassostrea gigas])

HSP 1 Score: 124.405 bits (311), Expect = 1.734e-25
Identity = 79/244 (32.38%), Postives = 131/244 (53.69%), Query Frame = 0
Query:    1 MGISGLWNFLRD-QGHVRNLDGVELARHVENKVLAVDASLWL--MQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMW---KGMSSPSQPYVPRCNHSLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRAL 238
            MG++ LW  L   Q H       +    ++ + LAVD S+W+   QC K+   +  K +++ +F R+ H L+LG   V V EG  P  KQ  M +R++T +   K +    Q      N  L +  E    +LD +G+PY  + GE EA CA +   G+VD+ +++DGDA LYGAR +Y++  ++ +   D H   +   + ++ + +S + L+A+ LL GCD+L +G+  VG   A  ++ AL
Sbjct:    1 MGVTNLWQVLEPVQAH-------QTLSSLKGQTLAVDLSIWVCETQCVKQMQGVVSKPYLRNLFFRISHLLQLGVHLVFVIEGRAPDLKQQVMAKRQETRFPQRKAVGGQRQGGRRNFNACLKECCE----MLDYLGVPYVHSPGEAEATCAALNASGVVDACLTNDGDAFLYGARTVYRNFTMNTK---DPHVECYCMTDVEERLGLSREKLVAMALLLGCDYLPKGVPGVGVERAIKMMNAL 230          
BLAST of EWM27203.1 vs. NCBI_GenBank
Match: gi|1084296237|ref|XP_018651216.1| (putative xp-G/rad2 DNA repair endonuclease family member [Schistosoma mansoni] >gi|360043194|emb|CCD78606.1| putative xp-G/rad2 DNA repair endonuclease family member [Schistosoma mansoni])

HSP 1 Score: 114.39 bits (285), Expect = 2.422e-24
Identity = 70/241 (29.05%), Postives = 128/241 (53.11%), Query Frame = 0
Query:    1 MGISGLWNFLRDQGHVRNLDGVELARHVENKVLAVDASLWLMQCRKESTYLHDKKHIKVVFERVIHYLRLGALPVLVFEGYTPPAKQTKMERRRKTMWKGMSSPSQPYVPRCNH-SLMQLGEDVKKLLDAMGLPYEQAGGEGEALCAVMYCQGLVDSVVSSDGDALLYGARRLYKDLRLHARLLPDNHSGEWVALENDDGVSISGQDLMAVCLLAGCDFLSEGLRQVGCIGAWGVVRALKA 240
            MG+ GLW  L      R L  +          +AVD S+W+  C  +S       H++ +F R++  LR   LP+ V +G  P  K   M++R++  W G  +  +   P  N     ++ ++  +LL++ G+P+ Q+ GE EA+CA +    LVD+ +++DGDA LYGA  +Y+   + +R   D+    +      D ++++  DL+ + +L GCD+ + G+ ++G +GA  ++ +LK+
Sbjct:    1 MGVHGLWGILSSVQEYRPLSKIGCDS------VAVDLSIWI--CGDKSITPLPALHLRNLFFRLVGLLRQNTLPIAVLDGVAPSLKSDVMKQRQQK-WTGKITTQKCTKPNLNRIRFSKVSQECIQLLNSFGIPWVQSPGEAEAMCAFLNSNKLVDACITNDGDAFLYGAETVYRHFSMDSR---DSSVCVFHMHRILDVLNLTKCDLVLLGILLGCDYWASGVSRLGPVGALRLISSLKS 229          
The following BLAST results are available for this feature:
BLAST of EWM27203.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109383|gb|EWM27203.1|0.000e+0100.00flap endonuclease 1-like protein [Nannochloropsis ... [more]
gi|303277071|ref|XP_003057829.1|3.631e-3726.87predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|255072853|ref|XP_002500101.1|2.091e-3430.51predicted protein [Micromonas commoda] >gi|2265153... [more]
gi|1004146487|gb|KXZ54462.1|1.510e-2926.91hypothetical protein GPECTOR_4g1013 [Gonium pector... [more]
gi|552835843|ref|XP_005849037.1|9.258e-2827.17hypothetical protein CHLNCDRAFT_143468 [Chlorella ... [more]
gi|926791679|ref|XP_013904313.1|2.109e-2732.23putative Flap endonuclease GEN [Monoraphidium negl... [more]
gi|291242835|ref|XP_002741315.1|1.041e-2632.51PREDICTED: flap endonuclease GEN homolog 1-like [S... [more]
gi|762100115|ref|XP_011432504.1|1.565e-2532.38PREDICTED: flap endonuclease GEN homolog 1 [Crasso... [more]
gi|405969706|gb|EKC34660.1|1.734e-2532.38Flap endonuclease GEN-like protein 1 [Crassostrea ... [more]
gi|1084296237|ref|XP_018651216.1|2.422e-2429.05putative xp-G/rad2 DNA repair endonuclease family ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3474rna3474Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications