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Properties
| Property Name | Value |
|---|
| Product | protein of unknown function DUF1995 |
| Orig transcript id | gnl|cribi|Naga_100010g26.6118.mrna |
| Orig protein id | gnl|cribi|Naga_100010g26.6118 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:496335..498113 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3473 ID=rna3473|Name=rna3473|organism=Nannochloropsis gaditana|type=mRNA|length=2100bp
ATGCCATTGAAAAAGAAGGCGGGCGCAGCAGGAAGATCAAAAGCCGCAGG
TGGACATGAGAGCAGTCCTAAAGCCTCGACGGTGTCAGAAGTGTCGAAAG
ATGGAGCGCCTTTGCAGACCCCGTCTGGCTCGAAACGGACAAGGAGCAGC
GGTGAGACGGCTGAGACCACCGGCAGCTCATCACGTAAGGCAGAGAAGCG
AGATGAAATAATGACGGATGACGCTTTCGAACATTCGACATCACCGAAGC
CTAGCCGGCGGGGCCCTAGACCCACCCTGCTAGAGCAGGTTTTGCCATCA
TCTTCGGTCAGAGCAAGTCGAAAACGGTCCTCCCTGGGGGGCGAGGATGA
GCAATCGGTGGAGGAGACAGGAAAGGAGCAGCATCTTGTCGAGGTTCCGC
CCCCTCCTGCCGCAGAGAGTGTGTTATCTGGTCATGTAGGCGGTAAGTCT
TGTACAGGGCAGGAGGATGGCGTAGGGCGGGGGATAGACCACACGGCACA
CGGAGACTCTCAGCCTGTGCTGCCGACGCCACGGACTGAAGTCGAGGAAA
GGGAGGATCATGGAAGAAAGCATGTCGAGAATGGAAGAGGAAAAGAGCTA
CCCGTCAAAAGGAGTAGTGCTGCATCAAGGGGCAGATCGAAGCGCCCGCG
GGTTCAAGATCAGGGCGTGGACAGCAAAGAAAATCCGACGAAGGCGTCTG
AGCCCCAGGGGGGTGGTGAGCAGGCAGGGGATAAGTCAATGCGCAGACAA
TTTGCCTTGACGGCCGAGTCGGAGGATCACGCGGTGAAAGGCAGCGAGCA
AATTGGAGAGCCCGACACTGAGGGAGCGGAAGAGGAGGCGATGGCAATTG
GTTTCGCGATAGTGAAGGACTTGGAGCCGAGACTGAAGGGGTCAGCCGAG
GAGGAAGCCCCGACAGGTGAAGACACCGTGGGTTCCCAGTCTTCTCCCCA
CTTGATTTTGTCTCCAGTGCAAGAGCAAGTAATGGACATGGCGGCACGAA
GGCCCGCGTCTGGCGGGGGACGGAAGGGCGCCGGCAGCGAGGGCGCCGGG
GGAGGGGGTTCCCCTTCATCGCCGCCTGGGCCGGCGTCTGACGCGGCCCT
CTCGGGACTAGACAGGGGGGCTGACCCAGTACCGGGGTTCCCGAGTTCCG
TACCGAAAGAAGTTGCCTCCGCCCAGGAAAGGTCGACGGGAGGGTCGAGC
GCTCTGCCCAGCGACGAGTGGGATCTAGTGGGGACGGAGACAGACCGGGA
CCGGAAGAAGAAGCTTAGGCTCAAGCAGCAGCTGGCTTCCGACGCGCGCG
CACGGCCCAGTCATGCCCCGGTCTTGGCTTCACTAACAGCCCCTGCCGTG
GCCCCTGCGCCTCGAGGAGCAAGCTTCGCGTGGGATAGTGGACGCGGCAG
GGAGCCCCCCGGAGCCCCCGCGAGTGCGCAGGCGTCCTTGTCCTCGACCA
TGCCACCCCCCTCGGCGTCTGCGAACCGTGGGGACCAAGAGAGAGGGCGG
GAGCGTGAGGGAGGAGGATGGCCTACTAAGCGACATCTGGGGCGAGAAGA
GTCGGGGACGAGCAAGGGCAAGGAGCCCTCCGGTCCAGGCGCACATTCCT
CTAGCCGCCCCTCGCTGCCATCCTGTAACGTATCTGGCGGCGGCGGGAGC
GCCAACGACACTAGCAGCAGCAGGGATGGTGGCGTCCGTCAGCCCCCTGT
TGCGGCCAGCGACAGCGCGCCGCCTGCGGGCGAGGAATCTTTTGTAATTC
CACGCTGGGAACCTCGGCGCAAGGAAGTGGTGCAGGACCTGCAGCAGCAG
CTTGAGGCCGCTGTCAAGGACTGTCGCATCCTGCAGGTCTCCAAGCGGCG
AGACCGGGTCATGGAGGGCTCTGCCATCGATAAAGAGGCCTCCTTTCTCC
GCCCCTATCTGTCTGGATGCACCGTGCACGACTCTGCGACGGGGGAGCCC
CTCCACGAGCCCAAGGCGCCGCACGAGGGAAGGGGGGGGGGGAGGGGCCG
GCGGCGGTGGCGGAGGGTTAAGGAGTGCAACGTACAGACGTTAGTTGAAA
ACCAAACCACACATGCAATGAATGACAACAACAGTAAATGTGCAAATTGA back to topprotein sequence of rna3473 >rna3473-protein ID=rna3473-protein|Name=rna3473|organism=Nannochloropsis gaditana|type=polypeptide|length=337bp
MTRVSLRQSALVVSLYLLLGTYAFTVPPLNQVSQSSRSHRRRICPSYMIA
NFLGGGGEPQGIPRSIKDGINGLRFAMQRALRDRKSRAEINLPRGTPLGV
EGPGAGSADDDKYEKSDRELARLTVELFKPIIDNTVVIFSQGRQARRAAS
IWGTALVKTMALDEMTSSAIKRKNKKAKKGGGFGASEGGGEMTTLPPGTE
VCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVAL
LSEFEPVFFLNVLNDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILAS
KPERFTKEEKLIALREGAENNAKPLLEKLTSSLWGSG back to topmRNA from alignment at CM002461.1:496335..498113+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3473 ID=rna3473|Name=rna3473|organism=Nannochloropsis gaditana|type=mRNA|length=1779bp|location=Sequence derived from alignment at CM002461.1:496335..498113+ (Nannochloropsis gaditana)
TCATTATTTCATCTCGCTTCTCTGCCTTACGTGATGAGCTGCCGGTGGTC
TCAGCCGTCTCACCGCTGCTCCTTGTCCGTTTCGAGCCAGACGGGGTCTG
CAAAGGCGCTCCATCTTTCGACACTTCTGACACCGTCGAGGCTTTAGGAC
TGCTCTCATGTCCACCTGCGGCTTTTGATCTTCCTGCTGcgcccgccttc
tttttcaatgGCATGCTTGCCCTGGGACCACTCAAAAATCGGGGCAAAAA
TACAGGTGCCGCGCGAACCTCAGGAATTCTATGCAGGGATCAATATTTAG
AGAAACTCGAGCTCGTAAAGTGCGCGTAAAATTGTTATCAATTGCCCGAA
CCCCgtgggccctccccctcaggaggctctctctcgcccccccaCGTGCC
CCCCCATAGCATCCAGCATCTAGTTTGTGCCTCGGCATGTGACactcctc
tcgcccctctttcAACATGATTATAACCACTCAAGAGGCTCCTCAATCCT
TTGCCTTCCATGCTGCGttctcctgtccctcctccctcattgccCTTTTG
ATTTTCATCACAGCTACGAAGGCATGCAACACGCCTGAACGCACGACCCG
GgcactgcctccctttccctttctcgctttgctctctttcttctgaCCAA
TTTTTCGTCACCATTTCCCTAATATTTGCTCGGCGTCGCAAAGAACAAAA
TGACACGAGTATCCTTGCGGCAGTCAGCACTTGTCGTCTCCctgtacctc
ctcctcggtacCTATGCCTTCACTGTGCCGCCCTTAAATCAAGTTTCCCA
GTCTAGTAGGTCACACAGGCGTCGAATATGCCCGTCATACATGATTGCCA
ACTTCTTaggtggcgggggcgagCCTCAAGGGATTCCAAGGTCCATCAAA
GACGGTATAAATGGGCTGCGCTTTGCCATGCAACGTGCGCTCCGGGACAG
GAAATCAAGGGCAGAGATAAATTTACCCCGGGGGACGCCGCTGGGTGTGG
AAGGCCCAGGAGCGGGTTCGGCGGACGACGATAAATATGAGAAATCAGAC
CGCGAGCTGGCACGATTGACCGTGGAACTCTTCAAGCCCATAATTGACAA
CACAGTTGTGATATTTTCTCAAGGCCGTCAAGCCCGTCGAGCGGCCAGCA
TCTGGGGCACGGCGCTAGTGAAAACCATGGCATTGGATGAGATGACATCG
TCAGCCATAAAGCGAAAAAATAAGAAAGCCAAGAAGGGGGGCGGCTTCGG
CGCTtctgaaggggggggggagatgacCACGCTGCCTCCGGGTACTGAGG
TGTGCATTGTAGTGGCTCCAGGCCCCAAAGAATTAAGCGCAGTGAGGAGA
TTGAGCGAAAGTTTGGGCTTCGACACGCTCCTCATCATTCTCAACACTCC
TCTGGAGGAGGCATCGCCCCATCTGCCTAAAGACGAGGCCGTCGCCTTGC
TGAGCGAGTTCGAGCCTGTCTTTTTCCTGAATGTATTGAACGACGCCGCA
GTCAAGACACTGGACAACGTCTTACTTTACAGAAGCTATCCAGGGGAATG
GTCAATCGCTCAAAAGGGAGCATTGGGCCCCCCCAAAATCCTGGCTTCCA
AACCAGAGCGCTTcacgaaagaggagaagttgATAGCCTTGCGTGAGGGC
GCCGAGAACAACGCGAAGCCTTTACTAGAGAAGCTGACTTCGAGCCTGTG
GGGGAGCGGGTGACATGGTCGGCAGCTCGACAAGAGTGTGACACGTAATG
AAAGTAATTCATTTATTTTAGGGTTTATG back to topCoding sequence (CDS) from alignment at CM002461.1:496335..498113+ >rna3473 ID=rna3473|Name=rna3473|organism=Nannochloropsis gaditana|type=CDS|length=1014bp|location=Sequence derived from alignment at CM002461.1:496335..498113+ (Nannochloropsis gaditana)
ATGACACGAGTATCCTTGCGGCAGTCAGCACTTGTCGTCTCCctgtacct
cctcctcggtacCTATGCCTTCACTGTGCCGCCCTTAAATCAAGTTTCCC
AGTCTAGTAGGTCACACAGGCGTCGAATATGCCCGTCATACATGATTGCC
AACTTCTTaggtggcgggggcgagCCTCAAGGGATTCCAAGGTCCATCAA
AGACGGTATAAATGGGCTGCGCTTTGCCATGCAACGTGCGCTCCGGGACA
GGAAATCAAGGGCAGAGATAAATTTACCCCGGGGGACGCCGCTGGGTGTG
GAAGGCCCAGGAGCGGGTTCGGCGGACGACGATAAATATGAGAAATCAGA
CCGCGAGCTGGCACGATTGACCGTGGAACTCTTCAAGCCCATAATTGACA
ACACAGTTGTGATATTTTCTCAAGGCCGTCAAGCCCGTCGAGCGGCCAGC
ATCTGGGGCACGGCGCTAGTGAAAACCATGGCATTGGATGAGATGACATC
GTCAGCCATAAAGCGAAAAAATAAGAAAGCCAAGAAGGGGGGCGGCTTCG
GCGCTtctgaaggggggggggagatgacCACGCTGCCTCCGGGTACTGAG
GTGTGCATTGTAGTGGCTCCAGGCCCCAAAGAATTAAGCGCAGTGAGGAG
ATTGAGCGAAAGTTTGGGCTTCGACACGCTCCTCATCATTCTCAACACTC
CTCTGGAGGAGGCATCGCCCCATCTGCCTAAAGACGAGGCCGTCGCCTTG
CTGAGCGAGTTCGAGCCTGTCTTTTTCCTGAATGTATTGAACGACGCCGC
AGTCAAGACACTGGACAACGTCTTACTTTACAGAAGCTATCCAGGGGAAT
GGTCAATCGCTCAAAAGGGAGCATTGGGCCCCCCCAAAATCCTGGCTTCC
AAACCAGAGCGCTTcacgaaagaggagaagttgATAGCCTTGCGTGAGGG
CGCCGAGAACAACGCGAAGCCTTTACTAGAGAAGCTGACTTCGAGCCTGT
GGGGGAGCGGGTGA back to top
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