EWM27148.1, cds3464 (CDS) Nannochloropsis gaditana

Overview
NameEWM27148.1
Unique Namecds3464
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:497034..498047 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27148.1
Productprotein of unknown function DUF1995
Orig transcript idgnl|cribi|Naga_100010g26.6118.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:497034..498047 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018962DUF1995
Homology
BLAST of EWM27148.1 vs. NCBI_GenBank
Match: gi|585109328|gb|EWM27148.1| (protein of unknown function DUF1995 [Nannochloropsis gaditana])

HSP 1 Score: 680.633 bits (1755), Expect = 0.000e+0
Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0
Query:    1 MTRVSLRQSALVVSLYLLLGTYAFTVPPLNQVSQSSRSHRRRICPSYMIANFLGGGGEPQGIPRSIKDGINGLRFAMQRALRDRKSRAEINLPRGTPLGVEGPGAGSADDDKYEKSDRELARLTVELFKPIIDNTVVIFSQGRQARRAASIWGTALVKTMALDEMTSSAIKRKNKKAKKGGGFGASEGGGEMTTLPPGTEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVALLSEFEPVFFLNVLNDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILASKPERFTKEEKLIALREGAENNAKPLLEKLTSSLWGSG 337
            MTRVSLRQSALVVSLYLLLGTYAFTVPPLNQVSQSSRSHRRRICPSYMIANFLGGGGEPQGIPRSIKDGINGLRFAMQRALRDRKSRAEINLPRGTPLGVEGPGAGSADDDKYEKSDRELARLTVELFKPIIDNTVVIFSQGRQARRAASIWGTALVKTMALDEMTSSAIKRKNKKAKKGGGFGASEGGGEMTTLPPGTEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVALLSEFEPVFFLNVLNDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILASKPERFTKEEKLIALREGAENNAKPLLEKLTSSLWGSG
Sbjct:    1 MTRVSLRQSALVVSLYLLLGTYAFTVPPLNQVSQSSRSHRRRICPSYMIANFLGGGGEPQGIPRSIKDGINGLRFAMQRALRDRKSRAEINLPRGTPLGVEGPGAGSADDDKYEKSDRELARLTVELFKPIIDNTVVIFSQGRQARRAASIWGTALVKTMALDEMTSSAIKRKNKKAKKGGGFGASEGGGEMTTLPPGTEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVALLSEFEPVFFLNVLNDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILASKPERFTKEEKLIALREGAENNAKPLLEKLTSSLWGSG 337          
BLAST of EWM27148.1 vs. NCBI_GenBank
Match: gi|224008072|ref|XP_002292995.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971121|gb|EED89456.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 147.132 bits (370), Expect = 2.353e-37
Identity = 110/314 (35.03%), Postives = 158/314 (50.32%), Query Frame = 0
Query:   38 SHRRRICPSYMIANFLGGG--GEPQGIPRSIKDGINGLRFAMQRALRDRKSRAEINLPRGTPLGVEGP--------------GAGSADDD------KYEKSDRELARLTVELFKPIIDNTVV-IFSQGRQARRAASIWGTAL---VKTMALDEMTSSA----IKRKNK---KAKKGGGFGASEGGGEMT--------TLPPGTEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVALLSEFEPVFFLNVLNDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILASKP-ERFTKEE 309
            S  +R   S  I N  GGG   EPQ +P+ +KD I+  R A+Q+ L +R SR ++ +P G   GVEG               G  S D D      K E S+RELARL VE+F+P+    +  +F+    A +A  +W   L    K +A+D     +    +K  NK   K KK  GF AS+   EM         +LP GTEV + VAPGPKEL A+ R+   +G  T +I+LN  L     +  ++       +FE ++ L     A  +     L++R+YPG+W +A+K  +G PK +ASK  ERF+ EE
Sbjct:   43 SPSQRATTSLHIGNVFGGGDSNEPQ-LPKDVKDAISKCRGAVQKGLENRISRMDVEMPVGANFGVEGKKSKNNKRGNLSSLTGDESEDADVALTLEKLETSNRELARLFVEMFQPLGGEAIAAVFNDEYLADQARQLWSNDLSAECKIVAIDRKGKKSRGGLLKTGNKSMQKKKKAMGF-ASKIAAEMEDESNSGPFSLPKGTEVAVFVAPGPKELIAIERICNQVGMGTCIILLNARLSLVEKYSSEEAEKLFTQDFETIWSLGA---APQEDAPGCLMHRAYPGDWVLARKPKVGAPKTIASKKGERFSGEE 351          
BLAST of EWM27148.1 vs. NCBI_GenBank
Match: gi|1210517646|dbj|GAX23561.1| (hypothetical protein FisN_14Hh261 [Fistulifera solaris])

HSP 1 Score: 141.354 bits (355), Expect = 5.114e-36
Identity = 100/280 (35.71%), Postives = 149/280 (53.21%), Query Frame = 0
Query:   48 MIANFLGGGGEPQ--GIPRSIKDGINGLRFAMQRALRDRKSRAEINLPRGTPLGVEGPGA---GSADDDKYEKSDRELARLTVELFKPII-DNTVVIFSQGRQARRAASIW---GTALVKTMALDEMTSSAIKRKNKKAKKGGGFG---ASEGGGEMTT----LPPGTEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVALLSE-FEPVFFLNVL-NDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILASKPERFTKEE 309
            MIAN            +P+ +K+ ++  R A Q AL++R SR +I  P GT   VE       G      +++SDRELARL V++F+P+  D   VIF    QA++A ++W    +A  + +AL+        +K + AKK  GF    A+E   E ++    LP   EV + V+PGPKEL  V ++ + +G  TL+++LNT L   S +     A  L ++ FE VF L     DAA     N LL+R+YP +W +A+K A+GPPK +    +R T EE
Sbjct:    1 MIANLFSTDNNKNLPSLPKDVKEAVSKCREATQEALKNRISRMDIEFPVGTKFNVEKSATKSKGPPSLQDFQRSDRELARLFVDMFQPVGGDRIAVIFKDDDQAKQAKNLWKGDASAASRILALNR------GKKQRTAKKSLGFANKLAAELEEEKSSGPFSLPENIEVALFVSPGPKELVVVEKICDQVGDGTLVVLLNTRLASIS-NFGSTAATKLFTQTFESVFHLAAAPQDAA----PNCLLHRAYPKDWVLARKPAVGPPKSMGRWSQRPTLEE 269          
BLAST of EWM27148.1 vs. NCBI_GenBank
Match: gi|219116869|ref|XP_002179229.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409120|gb|EEC49052.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 140.969 bits (354), Expect = 1.940e-35
Identity = 105/292 (35.96%), Postives = 154/292 (52.74%), Query Frame = 0
Query:   41 RRICPSYMIANFLGG---GGEPQGIPRSIKDGINGLRFAMQRALRDRKSRAEINLPRGTPLGVE-GPGAGSADD----DKYEKSDRELARLTVELFKPII-DNTVVIFSQGRQARRAASIW---GTALVKTMALDEMTSSAIKRKNKKAKKGGGFGASEGGGEMTT-----LPPGTEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVALLSEFEPVFFLNV-LNDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILASKPERFTKEEKLIAL 314
            R+     M+ NF GG   G +   +PR +K+ +   R A Q AL++R SR +I  P G    +E G    +A +    D+ ++SDRELARL V++F+P+  D   V+F+    A +A   W    TA+   ++LD   S A K+K K +K      A+E  GEM       LP  TEV + VAPGPKEL  V ++ + +G +TL+++LN  L   S       A   L +FE VF L     DAA       LLYR+YPG W +A+K A+G PK +  + E+ T ++  +A 
Sbjct:   37 RKTTAQLMVGNFGGGNEKGAKLSTLPRDVKEAVKSCREATQEALKNRISRMDIEFPVGAKFNIEKGEARRNAGETPTKDELDRSDRELARLFVDMFQPVGGDRIAVVFADVSAADKARKTWKGDTTAICNIVSLDRRKSQASKKKKKNSKGFAAKLAAEVEGEMDMSGPFRLPGKTEVALFVAPGPKELITVEKICQEVGMETLVVLLNARLSAVSNFGSAATAELFLGKFESVFSLTAGPQDAA----PGCLLYRAYPGRWVVARKPAVGQPKAVLEQSEKPTPDQVRVAF 324          
BLAST of EWM27148.1 vs. NCBI_GenBank
Match: gi|1210530791|dbj|GAX10742.1| (hypothetical protein FisN_14Lh261 [Fistulifera solaris])

HSP 1 Score: 139.428 bits (350), Expect = 2.688e-35
Identity = 100/279 (35.84%), Postives = 148/279 (53.05%), Query Frame = 0
Query:   48 MIANFLGGGGEP-QGIPRSIKDGINGLRFAMQRALRDRKSRAEINLPRGTPLGVEGPGAGSADD---DKYEKSDRELARLTVELFKPII-DNTVVIFSQGRQARRAASIW---GTALVKTMALDEMTSSAIKRKNKKAKKGGGFG---ASEGGGEMTT----LPPGTEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVALLSE-FEPVFFLNVL-NDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILASKPERFTKEE 309
            MIAN      +    +P+ +K+ +   R A Q AL++R SR +I  P GT   VE  G+ S       ++++SDRELARL VE+F+P+  D   VIF +  QA +A  +W    +A  + +AL+        +K +  KK  GF    A+E   E ++    LP   EV + ++PGPKEL  V ++   +G  TL+++LNT L   S +     A  L ++ FE VF L     DAA     N LL+R+YP +W +A+K A+GPPK      +R T EE
Sbjct:    1 MIANLFNTDKQSLPSLPKDVKEAVRKCREATQEALKNRISRMDIEFPVGTKFNVEKSGSKSKGPPTLQEFQRSDRELARLFVEMFQPVGGDRIAVIFKEDEQAEQAKKLWKGDASAASRILALNR------GKKQRTGKKSLGFANKLAAELEEEKSSGPFALPENIEVALFISPGPKELVVVEKICNQVGDGTLVVLLNTRLGSIS-NFGSAAATKLFTQTFESVFHLAAAPQDAA----PNCLLHRAYPMDWVLARKPAVGPPKSFGRWSQRPTLEE 268          
BLAST of EWM27148.1 vs. NCBI_GenBank
Match: gi|551668950|ref|XP_005837234.1| (hypothetical protein GUITHDRAFT_104068 [Guillardia theta CCMP2712] >gi|428181390|gb|EKX50254.1| hypothetical protein GUITHDRAFT_104068 [Guillardia theta CCMP2712])

HSP 1 Score: 124.79 bits (312), Expect = 6.576e-30
Identity = 89/280 (31.79%), Postives = 143/280 (51.07%), Query Frame = 0
Query:   60 QGIPRSIKDGINGLRFAMQRALRDRKSRAEINLPRGTPLGVEGPGAGSADD------DKYEKSDRELARLTVELFK--PIIDNTVVIFSQGRQARRAASIWGTALV-KTMALDEMTSSAIKRKNKK-----------AKKGGGFGASEGGGEMTTLPPGTEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVALLSEFEPVFFLNVLNDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILASKPERFTKEEKLIALREGAE 319
            + +P++IKD +  LR AMQ AL  + SR +I  P G+ +GVEG    +  +      D  + SDRELAR  VE+F+   I  N VV F    QA +A   W  A   K + LD        ++NK+           + KG    A     + + +P GTEV IVV+P  K+L A+ ++   +G   L+I+ N  L+E + +  + +    L+EFE V+    L  +   + +  +L+R++PG+W +A    +GPPK+L    ++ + E   +ALR+  E
Sbjct:    3 ENLPKNIKDSLQQLRDAMQAALSSKCSRMDIEFPYGSNIGVEGRKTATDSEVPMVMQDDAQASDRELARAMVEMFRGTEIEQNLVVAFMDSPQANKATKRWAGAFAGKVIVLD-------SKQNKRPARAGGGGFGASVKGTAVKA-----KTSAIPEGTEVLIVVSPSVKDLKALEQICSEVGMGCLVILANARLDELN-YESESQRNFFLNEFERVYH---LRPSPSPSWNGGVLFRAFPGDWVVAMPRKIGPPKVLYRSSQKPSTEVIDVALRKEKE 266          
BLAST of EWM27148.1 vs. NCBI_GenBank
Match: gi|1072237226|gb|OEU21953.1| (hypothetical protein FRACYDRAFT_204956 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 121.709 bits (304), Expect = 2.498e-28
Identity = 98/309 (31.72%), Postives = 138/309 (44.66%), Query Frame = 0
Query:   62 IPRSIKDGINGLRFAMQRALRDRKSRAEINLPRGTPLGVE-------GPGAG--------SADDDK-----YEKSDRELARLTVELFKPII-DNTVVIFSQGRQARRAASIWGTALVKTMALDEM---------------------------------TSSAIKRKNKKAKKGGGFGASEGGGEMTTLPPGTEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVALLSEFEPVFFLNVLNDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILASKPERFTKEEKLIALRE 316
            +PR +K+ ++  R A Q AL  R SR +I  P GT  GVE       G G G          DD+       ++SDRELARL VE+F+P+  DN  V F     A  A S W   L  T  +  M                                 +S     +N K   GG  G+ +       LP  TEV + VAPGPKEL  + ++ E++G  TL+I+LN  L++ + +           +F+ VF L     A  +   N LL+R+YPGEW +A+K  +G PK + S+ E+ T  E   A  E
Sbjct:   12 LPRDVKEAVSKCRQATQDALAKRLSRMDIEFPVGTDFGVEKKSKPTKGGGRGKRRQDADIDGDDESNIQTTLDRSDRELARLFVEMFQPVGGDNIAVSFVDDSLADAAKSKWKNDLGSTCRVLAMNRRPGGGAKKKKKGKKVLTSARGFAAKLEAEIGSSDDYDNENDKNDFGGKGGSFQ-------LPSTTEVALFVAPGPKELIVIEKICETMGMGTLVILLNARLDKVTNYGTAGTEKLFTEDFDSVFSLAA---APQEEAPNCLLFRAYPGEWVLARKPNVGRPKTILSQTEKPTTVECRQAFDE 310          
BLAST of EWM27148.1 vs. NCBI_GenBank
Match: gi|873228589|emb|CEM15517.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 114.775 bits (286), Expect = 1.693e-26
Identity = 77/234 (32.91%), Postives = 118/234 (50.43%), Query Frame = 0
Query:   94 RGTPLGVEGPGAGSADDDKYEKSDRELARLTVELFKPIIDNTVVIFSQGRQARRAASIWGTALVKTMALDEMTSSAIKRKNKKAKKGGGFGASEGGGEMTTLPPG-----TEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEE--ASPHLPKDEAVALLSEFEPVFFLNVLNDAAVKT--LDNVLLYRSYPGEWSIAQKGALGPPKILA-SKPERFTKEEKLIALREG 317
            +G+ +  E P      D    +S RELAR+ +EL+  I D   V F    +A+ A  +W     +  A+  MT      + K+AK     G  E GG    +PPG     TEV +VV+PG  EL  V ++S S G +T++I+LN  L++  +   L  DE     S F P+F L  L +   K    ++ +L+R+YP +W +A+   +GP K++  S  E   +E + IA REG
Sbjct:   16 QGSKIDDESPAGSKRSDANMRRSSRELARVFIELWGQIEDAISVAFPTDEEAQEAIEVWKDEDFRVNAVYGMTRPRRADRRKQAK-----GKKERGGTSMVVPPGEIPEDTEVLLVVSPGAAELRQVEKISRSRGLETMIILLNARLDDKVSEGQLTADELEYFRSTFTPIFNLKFLFEGKGKDSKFNDCVLFRTYPDDWQVAKYRPIGPAKVVHRSASELSRREAEAIAEREG 244          
BLAST of EWM27148.1 vs. NCBI_GenBank
Match: gi|397586844|gb|EJK53737.1| (hypothetical protein THAOC_26763 [Thalassiosira oceanica])

HSP 1 Score: 101.679 bits (252), Expect = 1.233e-21
Identity = 73/216 (33.80%), Postives = 107/216 (49.54%), Query Frame = 0
Query:  111 DKYEKSDRELARLTVELFKPII-DNTVVIFSQGRQARRAASIWGTALVKTMALDEMTSSAIKRKNKKAKKGGG---------FGA-------SEGGGEMTTLPPGTEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVALLSEFEPVFFLNVLNDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILASKPERFTKEE 309
            +K E+S+RELARL VE+F+P+  D+   +F+    A  A   W   L       E + SAI RK +K+   G          F A        +G      L  GTEV I V+PGPKEL A+ R+   +G  T +I+LN  L         D     + EFEPV+ L+    A  +   + L+ RSYP +W IA+K  +G PK + ++  +F+ E+
Sbjct:    2 EKLERSNRELARLFVEMFQPLGGDHITCVFNNENLADVARKQWANDLSA-----ECSVSAIDRKRRKSGGIGKKGKKKKAKGFAAVMADAVEDDGSSGPFKLRDGTEVAIFVSPGPKELIAIERICNEVGMGTCVILLNARLSTLDKFASDDARNLFMEEFEPVWNLSA---APQEDAPSCLINRSYPNDWLIARKPKVGTPKTIKTQSTKFSAED 209          
BLAST of EWM27148.1 vs. NCBI_GenBank
Match: gi|397573203|gb|EJK48597.1| (hypothetical protein THAOC_32591, partial [Thalassiosira oceanica])

HSP 1 Score: 73.1738 bits (178), Expect = 8.585e-12
Identity = 54/140 (38.57%), Postives = 73/140 (52.14%), Query Frame = 0
Query:   53 LGGGGEPQGIPRSIKDGINGLRFAMQRALRDRKSRAEINLPRGTPLGVE----GPGAGSA-----DDD-------KYEKSDRELARLTVELFKPI-IDNTVVIFSQGRQARRAASIWGTALVKTMALDEMTSSAIKRKNK 175
             G   EPQ +P+ +KD I+  R A+Q+AL DR SR +I +P G   GVE    G G  S+     DDD       K E+S+RELARL VE+F+P+  D+   +F+    A  A   W   L       E + SAI RK +
Sbjct:   19 FGDKAEPQ-LPKDVKDAISKCRGAVQKALEDRLSRMDIEMPVGANFGVEKNRKGKGKLSSLTSGGDDDNEGLTMEKLERSNRELARLFVEMFQPLGGDHITCVFNNENLADVARKQWANDLSA-----ECSVSAIDRKRR 152          
The following BLAST results are available for this feature:
BLAST of EWM27148.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109328|gb|EWM27148.1|0.000e+0100.00protein of unknown function DUF1995 [Nannochlorops... [more]
gi|224008072|ref|XP_002292995.1|2.353e-3735.03predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210517646|dbj|GAX23561.1|5.114e-3635.71hypothetical protein FisN_14Hh261 [Fistulifera sol... [more]
gi|219116869|ref|XP_002179229.1|1.940e-3535.96predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210530791|dbj|GAX10742.1|2.688e-3535.84hypothetical protein FisN_14Lh261 [Fistulifera sol... [more]
gi|551668950|ref|XP_005837234.1|6.576e-3031.79hypothetical protein GUITHDRAFT_104068 [Guillardia... [more]
gi|1072237226|gb|OEU21953.1|2.498e-2831.72hypothetical protein FRACYDRAFT_204956 [Fragilario... [more]
gi|873228589|emb|CEM15517.1|1.693e-2632.91unnamed protein product [Vitrella brassicaformis C... [more]
gi|397586844|gb|EJK53737.1|1.233e-2133.80hypothetical protein THAOC_26763 [Thalassiosira oc... [more]
gi|397573203|gb|EJK48597.1|8.585e-1238.57hypothetical protein THAOC_32591, partial [Thalass... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3473rna3473Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications