rna3470, rna3470 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3470
Unique Name	rna3470
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2270
Alignment location	CM002461.1:491532..492662 +

Link to JBrowse

Properties


Property Name	Value
Product	rab8 -family small gtpase
Orig transcript id	gnl\|cribi\|Naga_100010g23.6139.mrna
Orig protein id	gnl\|cribi\|Naga_100010g23.6139
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:491532..492662 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g23	gene3344	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3470	rna3470-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27169.1	cds3461	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:491532..492662+
coding sequence from alignment at CM002461.1:491532..492662+

mRNA sequence

>rna3470 ID=rna3470|Name=rna3470|organism=Nannochloropsis gaditana|type=mRNA|length=2270bp
TTGTTGCTGTTGCTGTTCTACGATATGATACTACTCAAATTTCACCCCCT
CCTTTCACATGTGCACAGACAATGAGGACTCTCAGCTTGTACCTACTTCT
TGGAATCATTTTACACGCTGTTGAGGCGTCGCGATTTTCTCTTAGCCCTC
CGGCATTCTTCAATCGGTTTTCAGATTTTGAGGAGGAGTATGAGGAGGAG
GAGGAGGGTCCTGGGCTGGGGGGTTTGCCCTTGAAAGCCTTGGTGGGCGC
AAGTGTCGCAGCAGTTGGAGGTGTTGGTGTATCGTTTGCTCGACGAGCAA
TCAAGGCCAAGCAGCAGCGCGTGTCGACACCGAAGCAACAACGCTCTCAT
CTTCCAAGCAGCAGCACCGTTGGAAGCAGCACTCCGTCATTTGTCGAAAG
CGGCATCAAGGGTGGCAAGAGCGATCCCAAAATAGCACGCGGTACAACAA
CAATGGCACCACCATCGTCTACAGAGGCTGATGGCAGCGGCGAGGAAGCT
GAGAAAGAGCCTGAGGAGGTTTTCGATGTAGAGCCCGTGGTCGAGCTTGA
CGAGTCCAAGCTGTCGGAGGGCCAGAAGGAGCATCCCTACGCAAAGCTGC
TGGGACCGAAGCTTGTCAAATATGATTCCAAGCAAGGGAAACTTGTGGAA
GTGGCAACGGCGGACGTGTTGGACGGGAAGGTGACGTCTCTTTTTTTCCA
CGCTCAGCAGGTGGAGCAGATGCTGGAGAAGATGAAGGCGGGAAAGGTCC
TTCCTGGACTCAAGGAGGTCTACGCCGAGCAGCGGGCGAAAGGCAACAAC
TTTGAGGTGGTGTTCATGTCGCTGCCTGATGGCCAGGAGGGGCGCTTTCA
AGCGTACATGAAGGACATGCCCTGGTATGCCATGCCCTTTAACGCTACCG
AGCGCCTGCGCGACGCGTACAAGGCCTTCAAGATCCAGAACCTCCCTGCC
GCAGTGGTGGTGGACGAGCAGGCTCAGGTTTTGAATGAGAAGGGGTTTAC
GTACATGCTTATCGACAAAGAGGGGTTCCCGTGGCACCCGAAAACTCTCT
CCCAGATGCTCGGCTCTACCTTCCTTAGCAAGGACCGGAGCGTGCCAGCC
GCCGAGGTTGCGAAGAAAAAAGTTCTTGCCCTTTACTTCTCGGCTAACTG
GTGTAAGCCATGCCAAGAGTTCACGCCCAAGCTGGTGGAGGCCTACGAGA
AAGTTAGGGCGCAGGGGAAGGACTTGGAGGTGGTGTTCGTCTCCATGGAC
GAGACGGAGGAGAAATTTAAGGAGTACTTCGCGAAGATGCCATGGCTGAG
CCTGCCCTACGAGGATAAGACGGCTCGCTCGCTCCTCATGACGGAGCTGG
AGGTGAAGGGGCTGCCGACGCTAGTGTTGCTGGACGAGGAGCGGGAGGTA
ATCACAAGCAAGGGCCGAGACTTCGTCCTCAAAGACCCGGAGGGCGCCAA
GTTTCCCTGGTACCCGCAGCCCTTGAACGAGATTTCCTATTCTTTCGACG
GTATCGCGCAGAAGCCCTCCTTGGTTCTCTTCATGGAGGGCGCATCGGCC
GATGCCCAGGCGAAGATGGTGGCGGCCATGCAAGCTGTGGCCGAGGAATT
CACTGCCAAGAACAAGCTGGCGCCTGAGGACGCGGCGCACCGGTTCAATT
TCTATTATGCCCAGGAGATCTCAACATTCTCTAAGGCCCTCCGCTCCATC
GCCGGGTTGGAGCAGCTGAATCCGAAGGACAAATTTCTGAAGTCCAAGGC
GGAGGCCAACAAGCCGCGGCTGGTGCTCCTGGACATCGGCAAGGAGGTTT
GCCACGTATCCCCCGCCGAGGACGCGGGCCCAGTGGAGGAGACGACCATC
CGAGAACTGTTGCAGGCGCGCGTGGAGGGAACGCTGCCCATGGAGACCTT
TCGACAACCCGAGCCGGAGGAGGCGGCGGCCTCTGCCTCTGCGAAAGGGG
CGGGGACGGTCTGAGAGTGTTCCGAGAGGTCTAACTTTTGAAAGATGAGA
GAGATGAAGGCGATAGGCTGTAACAAGCTTGTTCGTGTCACGATAGCAAA
GACCAAAATGAAGAGCGTAAGAGAAAAATACACAGGCAAGAGGCGGACAA
GACACAGCCGAGAGGAAAGTCCAATGGATGAAGAAGCCGAGCCCGAATGT
GGGCCTCAGATTCGGGCTATCGATTTGTTGTTTTCGCTATTCCCGCCATA
CCACCATGCTTTCCGTGGGCCCCAAGCCCGTCTTTCCCCCTTCTTGCCGT
TATCCGGCTCCCGCCCTCCT

protein sequence of rna3470

>rna3470-protein ID=rna3470-protein|Name=rna3470|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MANRGKQGAQSKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIG
IDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD
ERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAE
EYRIKFFETSAKENVNVDEAFYTVARDIALRIDNEVDLTASGKNVKIGPG
VGPAGGKECC

mRNA from alignment at CM002461.1:491532..492662+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3470 ID=rna3470|Name=rna3470|organism=Nannochloropsis gaditana|type=mRNA|length=1131bp|location=Sequence derived from alignment at CM002461.1:491532..492662+ (Nannochloropsis gaditana)
ATGGCAAATAGAGGAAAGCAAGGTGCTCAGTCGAAATATGACCATCTGAT
CAAGCTTCTCTTGATTGGAGATAGTGGTAAGTGACAAAATATTTGTTGAG
GGGCTAAATCTTAAGAAAAACTCTCTCCGGTACTCATTTTGTCCAAGTCC
GTCTCTGATCTCTGTGGCCAGAGGCATACAACTCGGCATAGAAGCAATAG
AGCAGAAAACACAACATCTTCGCACGAAATCATTTTCCGCTCTTGGTTTG
ACAGGTGTTGGTAAGAGTTGTCTATTGCTTCGGTATTCGGAAGACTCATT
CACCCCTTCTTTCATAACCACTATCGGGTAAGTTAGTAGTTTTGTGTAAC
ACTATTTTGTGGAATAAGATTTTTTGCAACGAAATGGATAAGTGTTCTAT
TCCATCTGACGCCTCGGCAACGCGCTTTGAGGAGCTTTCCTTTGTGCATT
TTAACTTACGATTCAATTTTCTTTCCCATGAAGCATCGATTTCAAAATTA
AATCTTTGCCAttggaggacaagaagctCAAGTTACAAATCTGGGACACT
GCCGGTCAGGAGCGTTTCCGCACCATCACAACCGCGTACTATCGTGGCGC
GATGGGCATTCTTTTGGTATATGACGTAACAGACGAGCGCTCTTTTGCAA
ATGTAAAAAATTGGATGAGACAAATCGAGCAGCACGCTTCCGAAAGCGTC
AATAAAATTTTGATTGGTAACAAGTGTGATGTGGACCCTGCTGATCGGCG
CGTCTCATTagaacaaggaagaaaacTGGCAGAGGAGTATCGAATTAAAT
TTTTCGAAACATCAGCCAAAGAAAATGTGAatgtggacgaggccttcTAT
ACTGTGGCTAGGGATATTGCACTGAGGTAAGATCTTATCTTGCTCTACTA
CGTGGGGTCGATGCCGGAAACCGTAGACGATCCCTTCGATCACGAGACGA
GCCCATCAATTGTTTTGCAGATATGTACTAAGAGTTTTAGAAATCCCATA
CCGAGATTTAATGGCCCCTTACAAAAATCTTGCACTGCAGGATTGATAAT
GAAGTTGATTTGACCGCCAGCGGCAAGAACGTCAAGATCGGGCCTGGAGT
TGGTCCCGCAGGGGGCAAGGAGTGTTGCTAA

Coding sequence (CDS) from alignment at CM002461.1:491532..492662+

>rna3470 ID=rna3470|Name=rna3470|organism=Nannochloropsis gaditana|type=CDS|length=2532bp|location=Sequence derived from alignment at CM002461.1:491532..492662+ (Nannochloropsis gaditana)
ATGGCAAATAGAGGAAAGCAAGGTGCTCAGTCGAAATATGACCATCTGAT
CAAGCTTCTCTTGATTGGAGATAGTGGTGTTGGTAAGAGTTGTCTATTGC
TTCGGTATTCGGAAGACTCATTCACCCCTTCTTTCATAACCACTATCGGC
ATCGATTTCAAAATTAAATCTTTGCCAttggaggacaagaagctCAAGTT
ACAAATCTGGGACACTGCCGGTCAGGAGCGTTTCCGCACCATCACAACCG
CGTACTATCGTGGCGCGATGGGCATTCTTTTGGTATATGACGTAACAGAC
GAGCGCTCTTTTGCAAATGTAAAAAATTGGATGAGACAAATCGAGCAGCA
CGCTTCCGAAAGCGTCAATAAAATTTTGATTGGTAACAAGTGTGATGTGG
ACCCTGCTGATCGGCGCGTCTCATTagaacaaggaagaaaacTGGCAGAG
GAGTATCGAATTAAATTTTTCGAAACATCAGCCAAAGAAAATGTGAatgt
ggacgaggccttcTATACTGTGGCTAGGGATATTGCACTGAGGATTGATA
ATGAAGTTGATTTGACCGCCAGCGGCAAGAACGTCAAGATCGGGCCTGGA
GTTGGTCCCGCAGGGGGCAAGGAGTGTTGCTAAATGGCAAATAGAGGAAA
GCAAGGTGCTCAGTCGAAATATGACCATCTGATCAAGCTTCTCTTGATTG
GAGATAGTGGTGTTGGTAAGAGTTGTCTATTGCTTCGGTATTCGGAAGAC
TCATTCACCCCTTCTTTCATAACCACTATCGGCATCGATTTCAAAATTAA
ATCTTTGCCAttggaggacaagaagctCAAGTTACAAATCTGGGACACTG
CCGGTCAGGAGCGTTTCCGCACCATCACAACCGCGTACTATCGTGGCGCG
ATGGGCATTCTTTTGGTATATGACGTAACAGACGAGCGCTCTTTTGCAAA
TGTAAAAAATTGGATGAGACAAATCGAGCAGCACGCTTCCGAAAGCGTCA
ATAAAATTTTGATTGGTAACAAGTGTGATGTGGACCCTGCTGATCGGCGC
GTCTCATTagaacaaggaagaaaacTGGCAGAGGAGTATCGAATTAAATT
TTTCGAAACATCAGCCAAAGAAAATGTGAatgtggacgaggccttcTATA
CTGTGGCTAGGGATATTGCACTGAGGATTGATAATGAAGTTGATTTGACC
GCCAGCGGCAAGAACGTCAAGATCGGGCCTGGAGTTGGTCCCGCAGGGGG
CAAGGAGTGTTGCTAAATGGCAAATAGAGGAAAGCAAGGTGCTCAGTCGA
AATATGACCATCTGATCAAGCTTCTCTTGATTGGAGATAGTGGTGTTGGT
AAGAGTTGTCTATTGCTTCGGTATTCGGAAGACTCATTCACCCCTTCTTT
CATAACCACTATCGGCATCGATTTCAAAATTAAATCTTTGCCAttggagg
acaagaagctCAAGTTACAAATCTGGGACACTGCCGGTCAGGAGCGTTTC
CGCACCATCACAACCGCGTACTATCGTGGCGCGATGGGCATTCTTTTGGT
ATATGACGTAACAGACGAGCGCTCTTTTGCAAATGTAAAAAATTGGATGA
GACAAATCGAGCAGCACGCTTCCGAAAGCGTCAATAAAATTTTGATTGGT
AACAAGTGTGATGTGGACCCTGCTGATCGGCGCGTCTCATTagaacaagg
aagaaaacTGGCAGAGGAGTATCGAATTAAATTTTTCGAAACATCAGCCA
AAGAAAATGTGAatgtggacgaggccttcTATACTGTGGCTAGGGATATT
GCACTGAGGATTGATAATGAAGTTGATTTGACCGCCAGCGGCAAGAACGT
CAAGATCGGGCCTGGAGTTGGTCCCGCAGGGGGCAAGGAGTGTTGCTAAA
TGGCAAATAGAGGAAAGCAAGGTGCTCAGTCGAAATATGACCATCTGATC
AAGCTTCTCTTGATTGGAGATAGTGGTGTTGGTAAGAGTTGTCTATTGCT
TCGGTATTCGGAAGACTCATTCACCCCTTCTTTCATAACCACTATCGGCA
TCGATTTCAAAATTAAATCTTTGCCAttggaggacaagaagctCAAGTTA
CAAATCTGGGACACTGCCGGTCAGGAGCGTTTCCGCACCATCACAACCGC
GTACTATCGTGGCGCGATGGGCATTCTTTTGGTATATGACGTAACAGACG
AGCGCTCTTTTGCAAATGTAAAAAATTGGATGAGACAAATCGAGCAGCAC
GCTTCCGAAAGCGTCAATAAAATTTTGATTGGTAACAAGTGTGATGTGGA
CCCTGCTGATCGGCGCGTCTCATTagaacaaggaagaaaacTGGCAGAGG
AGTATCGAATTAAATTTTTCGAAACATCAGCCAAAGAAAATGTGAatgtg
gacgaggccttcTATACTGTGGCTAGGGATATTGCACTGAGGATTGATAA
TGAAGTTGATTTGACCGCCAGCGGCAAGAACGTCAAGATCGGGCCTGGAG
TTGGTCCCGCAGGGGGCAAGGAGTGTTGCTAA

Synonyms

Publications