EWM27169.1, cds3461 (CDS) Nannochloropsis gaditana

Overview
NameEWM27169.1
Unique Namecds3461
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:491532..491607 +
Alignment locationCM002461.1:491786..491858 +
Alignment locationCM002461.1:492015..492407 +
Alignment locationCM002461.1:492572..492662 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27169.1
Productrab8 -family small gtpase
Orig transcript idgnl|cribi|Naga_100010g23.6139.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:491532..491607 +
CM002461.1supercontigCM002461.1:491786..491858 +
CM002461.1supercontigCM002461.1:492015..492407 +
CM002461.1supercontigCM002461.1:492572..492662 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005886plasma membrane
GO:0005856cytoskeleton
GO:0016020membrane
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0015031protein transport
GO:0006913nucleocytoplasmic transport
GO:0007165signal transduction
GO:0006886intracellular protein transport
GO:0007264small GTPase mediated signal transduction
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR020849Small_GTPase_Ras
IPR003579Small_GTPase_Rab_type
IPR002041Ran_GTPase
IPR003578Small_GTPase_Rho
IPR001806Small_GTPase
Homology
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|585109349|gb|EWM27169.1| (rab8 -family small gtpase [Nannochloropsis gaditana])

HSP 1 Score: 434.491 bits (1116), Expect = 2.769e-154
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
Query:    1 MANRGKQGAQSKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRIDNEVDLTASGKNVKIGPGVGPAGGKECC 210
            MANRGKQGAQSKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRIDNEVDLTASGKNVKIGPGVGPAGGKECC
Sbjct:    1 MANRGKQGAQSKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRIDNEVDLTASGKNVKIGPGVGPAGGKECC 210          
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|1198305412|gb|OUM62208.1| (hypothetical protein PIROE2DRAFT_51733 [Piromyces sp. E2])

HSP 1 Score: 283.878 bits (725), Expect = 1.076e-94
Identity = 142/203 (69.95%), Postives = 165/203 (81.28%), Query Frame = 0
Query:   11 SKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALR-IDNEVDLTASGKNVKIGPG--VGPAGGKECC 210
            + YD+LIKLLLIGDSGVGKSCLLLR+SEDSFTPSFITTIGIDFKI+++ L+ K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSF N++NW+  IEQHASE VNKILIGNKCD+    +++  EQG+ LA+EY IKF ETSAK N+ V+EAF+T+ARDI  R IDN  +     K   I PG   G AGG  CC
Sbjct:    7 ATYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWIHNIEQHASEGVNKILIGNKCDI-LEQKKIDKEQGQALADEYGIKFLETSAKSNIGVEEAFFTLARDIKKRLIDNAEEKKQDSKGQTINPGETQGSAGG--CC 206          
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|168049674|ref|XP_001777287.1| (Rab8/RabE-family small GTPase [Physcomitrella patens] >gi|162671389|gb|EDQ57942.1| Rab8/RabE-family small GTPase [Physcomitrella patens])

HSP 1 Score: 284.263 bits (726), Expect = 1.134e-94
Identity = 143/218 (65.60%), Postives = 176/218 (80.73%), Query Frame = 0
Query:    1 MANRGKQGAQSKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRI---DNEVDL-TASGK-NVKIGPGVG---PAGGKECC 210
            MA R +      YD+LIKLLLIGDSGVGKSCLLLR+S+DSFT SFITTIGIDFKI+++ L++K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF N++NW+R IEQHAS++VNKIL+GNK D+DP+ R V   +G+ LA+EY IKFFETSAK N+NV++ F+T+ARDI  R+   D++ D   A+GK +VK+ PG     PA G  CC
Sbjct:    1 MATRARA---DNYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDNKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDPSKRAVPFAKGQALADEYGIKFFETSAKTNMNVEDVFFTIARDIKTRLAESDSKPDAKNAAGKPDVKLTPGGAQQKPASG-SCC 214          
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|1183393028|gb|ORY18060.1| (ras-domain-containing protein [Neocallimastix californiae])

HSP 1 Score: 283.493 bits (724), Expect = 1.685e-94
Identity = 138/201 (68.66%), Postives = 162/201 (80.60%), Query Frame = 0
Query:   11 SKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALR-IDNEVDLTASGKNVKIGPGVGPAGGKECC 210
            + YD+LIKLLLIGDSGVGKSCLLLR+SEDSFTPSFITTIGIDFKI+++ L+ K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSF N++NW+  IEQHASE VNKILIGNKCD+    +++  EQG+ LA+EY IKF ETSAK N+ V+EAF+T+ARDI  R IDN  +     K   I PG   +    CC
Sbjct:    7 ATYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWIHNIEQHASEGVNKILIGNKCDI-LEQKKIEKEQGQALADEYGIKFLETSAKSNIGVEEAFFTLARDIKKRLIDNAEEKKQDNKGQTINPGETQSSSGGCC 206          
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|1183356475|gb|ORX84091.1| (ras-domain-containing protein [Anaeromyces robustus])

HSP 1 Score: 283.108 bits (723), Expect = 2.445e-94
Identity = 141/203 (69.46%), Postives = 166/203 (81.77%), Query Frame = 0
Query:   11 SKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALR-IDNEVDLTASGKNVKIGPG--VGPAGGKECC 210
            + YD+LIKLLLIGDSGVGKSCLLLR+SEDSFTPSFITTIGIDFKI+++ L+ K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSF N++NW+  IEQHASE VNKILIGNKCD+  + +++  EQG+ LA+EY IKF ETSAK N+ V+EAF+T+ARDI  R IDN  +     K   I PG   G +GG  CC
Sbjct:    7 ATYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWIHNIEQHASEGVNKILIGNKCDILES-KKIDKEQGQALADEYGIKFLETSAKSNIGVEEAFFTLARDIKKRLIDNAEEKKQDNKGQTINPGETQGSSGG--CC 206          
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|1183313010|gb|ORX42970.1| (ras-domain-containing protein [Piromyces finnis])

HSP 1 Score: 281.567 bits (719), Expect = 7.720e-94
Identity = 141/203 (69.46%), Postives = 164/203 (80.79%), Query Frame = 0
Query:   11 SKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALR-IDNEVDLTASGKNVKIGPG--VGPAGGKECC 210
            + YD+LIKLLLIGDSGVGKSCLLLR+SEDSFTPSFITTIGIDFKI+++ L+ K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSF N++NW+  IEQHASE VNKILIGNKCD+    +++  EQG+ LA+EY IKF ETSAK N+ V+EAF+T+ARDI  R IDN  +     K   I PG   G  GG  CC
Sbjct:    7 ATYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWIHNIEQHASEGVNKILIGNKCDI-LEQKKIDKEQGQALADEYGIKFLETSAKSNIGVEEAFFTLARDIKKRLIDNAEEKKQDTKGQTINPGETQGSTGG--CC 206          
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|673037838|ref|XP_008872880.1| (hypothetical protein H310_08786 [Aphanomyces invadans] >gi|574471676|gb|ETV98683.1| hypothetical protein H310_08786 [Aphanomyces invadans])

HSP 1 Score: 281.567 bits (719), Expect = 8.531e-94
Identity = 137/204 (67.16%), Postives = 163/204 (79.90%), Query Frame = 0
Query:   11 SKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRI---DNEVDLTASGKNVKIGP-GVGPAGGKECC 210
            SKYD L+KLLLIGDSGVGKSCLL+RYS+DSFT SFITTIGIDFK+K++ ++ K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD+ SF NV+NWMRQI+QHAS +VNKIL+ NKCDVDP+DR VS EQG  LA EY ++FFETSAK N+ VDEAF ++A D+  R+   D++    AS   VK+       A    CC
Sbjct:    6 SKYDLLVKLLLIGDSGVGKSCLLMRYSDDSFTTSFITTIGIDFKVKTIDVDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDDHSFQNVRNWMRQIQQHASPNVNKILVANKCDVDPSDRAVSKEQGEALAAEYGVQFFETSAKSNLQVDEAFRSIAVDVQKRLAESDSDRLDVASQSRVKLDEQATRSASSDGCC 209          
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|1183513140|gb|ORZ36370.1| (ras family-domain-containing protein [Catenaria anguillulae PL171])

HSP 1 Score: 281.567 bits (719), Expect = 9.848e-94
Identity = 141/213 (66.20%), Postives = 171/213 (80.28%), Query Frame = 0
Query:   11 SKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRV-SLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRI------------DNEVDLTASGKNVKIGPGVGPAGGKECC 210
            S YDHLIKLLLIGDSGVGKSCLLLR+++DSFTPSFITTIGIDFKI+++ L+ K++KLQIWDTAGQERFRTITTAYYRGAMGILL+YDVTDERSF N++NW+R IEQHAS  VNKIL+GNKCDV  AD++V S EQG++LA+E+ IKF ETSAK N+ V+EAF+++A+DI  R+             N+VD++   K     PG   AGGK CC
Sbjct:    6 STYDHLIKLLLIGDSGVGKSCLLLRFTDDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLIYDVTDERSFNNIRNWIRNIEQHASAGVNKILVGNKCDV--ADKKVISKEQGQELADEFGIKFIETSAKSNIGVEEAFFSLAKDIKKRLIDSQGAAGGDDDKNKVDISGGAK-----PGQQAAGGK-CC 210          
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|545354265|ref|XP_005642967.1| (Rab8/RabE-family small GTPase [Coccomyxa subellipsoidea C-169] >gi|384244926|gb|EIE18423.1| Rab8/RabE-family small GTPase [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 280.026 bits (715), Expect = 3.545e-93
Identity = 134/203 (66.01%), Postives = 165/203 (81.28%), Query Frame = 0
Query:   13 YDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRI-DNEVDLTASGK---NVKIGPGVGPA-GGKECC 210
            YD+LIKLLLIGDSGVGKSCLLLR+SEDSFT SFITTIGIDFKIK + +++K +KLQIWDTAGQERFRTIT+AYYRGAMGILLVYDVTDE SF N++NWMR IEQHAS++VNK+L+GNKCD+D + RRV   QG+ LA+E+ I+FFETSAK N+ VDE F ++A+D+ LR+ D++ D  ++G    NV +      A   K CC
Sbjct:    8 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTSSFITTIGIDFKIKKILIDNKWIKLQIWDTAGQERFRTITSAYYRGAMGILLVYDVTDESSFNNIRNWMRNIEQHASDNVNKVLVGNKCDMDESKRRVPYSQGQALADEFGIQFFETSAKSNIKVDEVFQSIAKDVMLRLRDSQTDSPSAGSGSGNVHLSSTTASAKQSKGCC 210          
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|970058779|ref|XP_015056102.1| (PREDICTED: ras-related protein RABE1c-like [Solanum pennellii] >gi|970058781|ref|XP_015056103.1| PREDICTED: ras-related protein RABE1c-like [Solanum pennellii])

HSP 1 Score: 280.026 bits (715), Expect = 4.396e-93
Identity = 138/204 (67.65%), Postives = 163/204 (79.90%), Query Frame = 0
Query:   13 YDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRIDNEVDLTASGKNVKIGPGVGPAGGKE------CC 210
            YDHLIKLLLIGDSGVGKSCLLLR+S+ SFT SFITTIGIDFKIK++ L+ K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF N++NW+R IEQHAS++VNKIL+GNK D+D + R V   +G+ LA+EY IKFFETSAK N+NV EAF+++ARDI  RI  E D  A  + +KI      AGG +      CC
Sbjct:   12 YDHLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIKTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVQEAFFSIARDIKQRI-AESDSKAEPQTIKINQPDQTAGGAQSAQKSACC 214          
The following BLAST results are available for this feature:
BLAST of EWM27169.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109349|gb|EWM27169.1|2.769e-154100.00rab8 -family small gtpase [Nannochloropsis gaditan... [more]
gi|1198305412|gb|OUM62208.1|1.076e-9469.95hypothetical protein PIROE2DRAFT_51733 [Piromyces ... [more]
gi|168049674|ref|XP_001777287.1|1.134e-9465.60Rab8/RabE-family small GTPase [Physcomitrella pate... [more]
gi|1183393028|gb|ORY18060.1|1.685e-9468.66ras-domain-containing protein [Neocallimastix cali... [more]
gi|1183356475|gb|ORX84091.1|2.445e-9469.46ras-domain-containing protein [Anaeromyces robustu... [more]
gi|1183313010|gb|ORX42970.1|7.720e-9469.46ras-domain-containing protein [Piromyces finnis][more]
gi|673037838|ref|XP_008872880.1|8.531e-9467.16hypothetical protein H310_08786 [Aphanomyces invad... [more]
gi|1183513140|gb|ORZ36370.1|9.848e-9466.20ras family-domain-containing protein [Catenaria an... [more]
gi|545354265|ref|XP_005642967.1|3.545e-9366.01Rab8/RabE-family small GTPase [Coccomyxa subellips... [more]
gi|970058779|ref|XP_015056102.1|4.396e-9367.65PREDICTED: ras-related protein RABE1c-like [Solanu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3470rna3470Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications