EWM27169.1, cds3461 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|585109349|gb|EWM27169.1| (rab8 -family small gtpase [Nannochloropsis gaditana]) HSP 1 Score: 434.491 bits (1116), Expect = 2.769e-154 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0 Query: 1 MANRGKQGAQSKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRIDNEVDLTASGKNVKIGPGVGPAGGKECC 210 MANRGKQGAQSKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRIDNEVDLTASGKNVKIGPGVGPAGGKECC Sbjct: 1 MANRGKQGAQSKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRIDNEVDLTASGKNVKIGPGVGPAGGKECC 210
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|1198305412|gb|OUM62208.1| (hypothetical protein PIROE2DRAFT_51733 [Piromyces sp. E2]) HSP 1 Score: 283.878 bits (725), Expect = 1.076e-94 Identity = 142/203 (69.95%), Postives = 165/203 (81.28%), Query Frame = 0 Query: 11 SKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALR-IDNEVDLTASGKNVKIGPG--VGPAGGKECC 210 + YD+LIKLLLIGDSGVGKSCLLLR+SEDSFTPSFITTIGIDFKI+++ L+ K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSF N++NW+ IEQHASE VNKILIGNKCD+ +++ EQG+ LA+EY IKF ETSAK N+ V+EAF+T+ARDI R IDN + K I PG G AGG CC Sbjct: 7 ATYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWIHNIEQHASEGVNKILIGNKCDI-LEQKKIDKEQGQALADEYGIKFLETSAKSNIGVEEAFFTLARDIKKRLIDNAEEKKQDSKGQTINPGETQGSAGG--CC 206
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|168049674|ref|XP_001777287.1| (Rab8/RabE-family small GTPase [Physcomitrella patens] >gi|162671389|gb|EDQ57942.1| Rab8/RabE-family small GTPase [Physcomitrella patens]) HSP 1 Score: 284.263 bits (726), Expect = 1.134e-94 Identity = 143/218 (65.60%), Postives = 176/218 (80.73%), Query Frame = 0 Query: 1 MANRGKQGAQSKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRI---DNEVDL-TASGK-NVKIGPGVG---PAGGKECC 210 MA R + YD+LIKLLLIGDSGVGKSCLLLR+S+DSFT SFITTIGIDFKI+++ L++K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF N++NW+R IEQHAS++VNKIL+GNK D+DP+ R V +G+ LA+EY IKFFETSAK N+NV++ F+T+ARDI R+ D++ D A+GK +VK+ PG PA G CC Sbjct: 1 MATRARA---DNYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDNKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDPSKRAVPFAKGQALADEYGIKFFETSAKTNMNVEDVFFTIARDIKTRLAESDSKPDAKNAAGKPDVKLTPGGAQQKPASG-SCC 214
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|1183393028|gb|ORY18060.1| (ras-domain-containing protein [Neocallimastix californiae]) HSP 1 Score: 283.493 bits (724), Expect = 1.685e-94 Identity = 138/201 (68.66%), Postives = 162/201 (80.60%), Query Frame = 0 Query: 11 SKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALR-IDNEVDLTASGKNVKIGPGVGPAGGKECC 210 + YD+LIKLLLIGDSGVGKSCLLLR+SEDSFTPSFITTIGIDFKI+++ L+ K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSF N++NW+ IEQHASE VNKILIGNKCD+ +++ EQG+ LA+EY IKF ETSAK N+ V+EAF+T+ARDI R IDN + K I PG + CC Sbjct: 7 ATYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWIHNIEQHASEGVNKILIGNKCDI-LEQKKIEKEQGQALADEYGIKFLETSAKSNIGVEEAFFTLARDIKKRLIDNAEEKKQDNKGQTINPGETQSSSGGCC 206
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|1183356475|gb|ORX84091.1| (ras-domain-containing protein [Anaeromyces robustus]) HSP 1 Score: 283.108 bits (723), Expect = 2.445e-94 Identity = 141/203 (69.46%), Postives = 166/203 (81.77%), Query Frame = 0 Query: 11 SKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALR-IDNEVDLTASGKNVKIGPG--VGPAGGKECC 210 + YD+LIKLLLIGDSGVGKSCLLLR+SEDSFTPSFITTIGIDFKI+++ L+ K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSF N++NW+ IEQHASE VNKILIGNKCD+ + +++ EQG+ LA+EY IKF ETSAK N+ V+EAF+T+ARDI R IDN + K I PG G +GG CC Sbjct: 7 ATYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWIHNIEQHASEGVNKILIGNKCDILES-KKIDKEQGQALADEYGIKFLETSAKSNIGVEEAFFTLARDIKKRLIDNAEEKKQDNKGQTINPGETQGSSGG--CC 206
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|1183313010|gb|ORX42970.1| (ras-domain-containing protein [Piromyces finnis]) HSP 1 Score: 281.567 bits (719), Expect = 7.720e-94 Identity = 141/203 (69.46%), Postives = 164/203 (80.79%), Query Frame = 0 Query: 11 SKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALR-IDNEVDLTASGKNVKIGPG--VGPAGGKECC 210 + YD+LIKLLLIGDSGVGKSCLLLR+SEDSFTPSFITTIGIDFKI+++ L+ K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSF N++NW+ IEQHASE VNKILIGNKCD+ +++ EQG+ LA+EY IKF ETSAK N+ V+EAF+T+ARDI R IDN + K I PG G GG CC Sbjct: 7 ATYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWIHNIEQHASEGVNKILIGNKCDI-LEQKKIDKEQGQALADEYGIKFLETSAKSNIGVEEAFFTLARDIKKRLIDNAEEKKQDTKGQTINPGETQGSTGG--CC 206
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|673037838|ref|XP_008872880.1| (hypothetical protein H310_08786 [Aphanomyces invadans] >gi|574471676|gb|ETV98683.1| hypothetical protein H310_08786 [Aphanomyces invadans]) HSP 1 Score: 281.567 bits (719), Expect = 8.531e-94 Identity = 137/204 (67.16%), Postives = 163/204 (79.90%), Query Frame = 0 Query: 11 SKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRI---DNEVDLTASGKNVKIGP-GVGPAGGKECC 210 SKYD L+KLLLIGDSGVGKSCLL+RYS+DSFT SFITTIGIDFK+K++ ++ K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD+ SF NV+NWMRQI+QHAS +VNKIL+ NKCDVDP+DR VS EQG LA EY ++FFETSAK N+ VDEAF ++A D+ R+ D++ AS VK+ A CC Sbjct: 6 SKYDLLVKLLLIGDSGVGKSCLLMRYSDDSFTTSFITTIGIDFKVKTIDVDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDDHSFQNVRNWMRQIQQHASPNVNKILVANKCDVDPSDRAVSKEQGEALAAEYGVQFFETSAKSNLQVDEAFRSIAVDVQKRLAESDSDRLDVASQSRVKLDEQATRSASSDGCC 209
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|1183513140|gb|ORZ36370.1| (ras family-domain-containing protein [Catenaria anguillulae PL171]) HSP 1 Score: 281.567 bits (719), Expect = 9.848e-94 Identity = 141/213 (66.20%), Postives = 171/213 (80.28%), Query Frame = 0 Query: 11 SKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRV-SLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRI------------DNEVDLTASGKNVKIGPGVGPAGGKECC 210 S YDHLIKLLLIGDSGVGKSCLLLR+++DSFTPSFITTIGIDFKI+++ L+ K++KLQIWDTAGQERFRTITTAYYRGAMGILL+YDVTDERSF N++NW+R IEQHAS VNKIL+GNKCDV AD++V S EQG++LA+E+ IKF ETSAK N+ V+EAF+++A+DI R+ N+VD++ K PG AGGK CC Sbjct: 6 STYDHLIKLLLIGDSGVGKSCLLLRFTDDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLIYDVTDERSFNNIRNWIRNIEQHASAGVNKILVGNKCDV--ADKKVISKEQGQELADEFGIKFIETSAKSNIGVEEAFFSLAKDIKKRLIDSQGAAGGDDDKNKVDISGGAK-----PGQQAAGGK-CC 210
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|545354265|ref|XP_005642967.1| (Rab8/RabE-family small GTPase [Coccomyxa subellipsoidea C-169] >gi|384244926|gb|EIE18423.1| Rab8/RabE-family small GTPase [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 280.026 bits (715), Expect = 3.545e-93 Identity = 134/203 (66.01%), Postives = 165/203 (81.28%), Query Frame = 0 Query: 13 YDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRI-DNEVDLTASGK---NVKIGPGVGPA-GGKECC 210 YD+LIKLLLIGDSGVGKSCLLLR+SEDSFT SFITTIGIDFKIK + +++K +KLQIWDTAGQERFRTIT+AYYRGAMGILLVYDVTDE SF N++NWMR IEQHAS++VNK+L+GNKCD+D + RRV QG+ LA+E+ I+FFETSAK N+ VDE F ++A+D+ LR+ D++ D ++G NV + A K CC Sbjct: 8 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTSSFITTIGIDFKIKKILIDNKWIKLQIWDTAGQERFRTITSAYYRGAMGILLVYDVTDESSFNNIRNWMRNIEQHASDNVNKVLVGNKCDMDESKRRVPYSQGQALADEFGIQFFETSAKSNIKVDEVFQSIAKDVMLRLRDSQTDSPSAGSGSGNVHLSSTTASAKQSKGCC 210
BLAST of EWM27169.1 vs. NCBI_GenBank
Match: gi|970058779|ref|XP_015056102.1| (PREDICTED: ras-related protein RABE1c-like [Solanum pennellii] >gi|970058781|ref|XP_015056103.1| PREDICTED: ras-related protein RABE1c-like [Solanum pennellii]) HSP 1 Score: 280.026 bits (715), Expect = 4.396e-93 Identity = 138/204 (67.65%), Postives = 163/204 (79.90%), Query Frame = 0 Query: 13 YDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEYRIKFFETSAKENVNVDEAFYTVARDIALRIDNEVDLTASGKNVKIGPGVGPAGGKE------CC 210 YDHLIKLLLIGDSGVGKSCLLLR+S+ SFT SFITTIGIDFKIK++ L+ K++KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF N++NW+R IEQHAS++VNKIL+GNK D+D + R V +G+ LA+EY IKFFETSAK N+NV EAF+++ARDI RI E D A + +KI AGG + CC Sbjct: 12 YDHLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIKTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVQEAFFSIARDIKQRI-AESDSKAEPQTIKINQPDQTAGGAQSAQKSACC 214 The following BLAST results are available for this feature:
BLAST of EWM27169.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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