rna347, rna347 (mRNA) Nannochloropsis gaditana

Overview
Namerna347
Unique Namerna347
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2994
Alignment locationCM002455.1:854101..855031 -

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Properties
Property NameValue
Productinosine triphosphate pyrophosphatase
Orig transcript idgnl|cribi|Naga_100003g149.1729.mrna
Orig protein idgnl|cribi|Naga_100003g149.1729
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:854101..855031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g149gene334Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna347rna347-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30212.1cds347Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna347 ID=rna347|Name=rna347|organism=Nannochloropsis gaditana|type=mRNA|length=2994bp
ATGGAGGGGGTAAAGGAACGAAAAGAGGAAAAGTACATTTTGCGGAACGA
GCATGCGGCTCTCACTGTATGGCCCGCTGGTATCCCTCTTGATCACCCCG
ATCACTGTCATCATCAACATCATCATTTGAATCAATATGAACCTGCGCCC
GGGCCACGCTTCTCATTCATAAGCAATGAGAACACGAGTTTGGGGATTTT
TGACACCAGCACCATTGAGTTTCGTGGAAAACTTCGTGGAAAGGCATGGA
AAACAACGATGGCAGAAGCGGTTGATGTCCAGGTGATCAAGTCGAACTTA
GGCTGTGCGCGCTTTCCTGGATTAGACGACTTCGGACCGGAAGCGCTGAC
GCTGGAGGCGCGACTGCCAGAAATTGGCCAGGTTTGCGTGGATTTTGCCT
TGCACACAATAGGACCCAGCATGGTTTTGCGTCTGCGCTGCCCAGCCCTT
GCCTGCTCCCATGACGTGCGGCTCGACGAGTTTGTGCTCTTCGACGGTGA
CTGCGACGTCTCGCAAGGGCCCCGACGGGATGGGAAATCTCTGGCTCGGA
TCTGGTGGGAATATTTGTCAAGACGGGTCCGGGGGCTCGGTCCTCGGCGT
GTTTTCGTGAACGGGTGGAACGCATGGAGTTTCACAGGCGTGGTCCAGCA
AGGGGCTCGTCCTTCGGCACCCGGATTGCCAGGGATCCTGAGTGCAGCTT
TTCATCACGGTGCAGGACCTGCAGAATTTGATAGAAGCAATAATAAGGAG
CTTTACAGCGAGATGTTCGCGCACGTCTCGGACAAAAGCCGAGGAACAGG
CCTCTTGCTGGGCTTCCTGACTCAACACGAGCAGTTTGGGGCTTTCTCGT
TTGATGAGTGCTTCGTCGAGGTGGGAGCTCACTGCCGCTGTGATGGACAG
CTACTCAAAGCAGGGGAGCTTATGCAGTCGGACTGGTGCCTCGTCGAGCT
TCAGACGACCTTGCCTGAAGAGCCTTTCGCAACGTTCATTGCGCGAGCTG
GCCGGGTCAACACAGCCTTGCTGGAAGAAAAATACAAAATTATTGCATGT
AGGCCCGATACAAAAAATGTTCCAGTGGGTTGGTGCTCATGGTATCACTT
CTATGAGGCTATATCTGAGGATAATTTGTTATCAAACCTGGAGATGATGG
CCAATCTTCGGCCGCAGTTGCCACTGCAACTTTTTCAAATTGATGACGGC
TATCAACGAGCGTGGGGTGACTGGCTGAAAATAGACCCGTTGAAATTTCC
CAACAAGAGCATGCGGGACATGGTAGATGCTGTGCGGTCGCGGGGCCTTC
GACCTGGTCTCTGGCTTGCCCCCATGGCAGTCGACAAGCACTCTCAAATA
GCAGCAGACCATCCCGACTGGATCATCCGCCAGCAAGGAGGACTCAGCCA
CGGATGGGCGGCCAACTCGGCGAACGTTGGGAAGTGGTTTTACGGATTAG
ACGTTACCCTACCGGAGGTACAGGCTTTTATTCGCGAGACGCTCACAACG
GTCTCGCACGGCGCTTGGAGTTTCGATTACCTGAAGTTGGACTTTCTTTA
TGTGGCAGCTTTGAAGGGCGCGCGCAGCGATCCGACTCTCAACACAGCGC
AGGTCCTCCAACTTGCTTTACGCCTGATTCGGGAGGCCGTGGGCCCTTCC
ACGTATATCCTCGGTTGCGGCTCGCCACTTGGAGCTACCATCGGCTGGGT
GAACGCCAACCGAGTGTCGGCGGATGCAGGCCCAGCATGGCTCCCCGTTT
TCCCTTTACCCGACTGCAAGTGGAACCTGCCTTGTGGGCGGAATATGGTT
CGAAACACCATTAACCGTCTTCCAATGCACGGTGTCTGGTGGGTGAATGA
CCCGGATTGTATGCTGCTGCGTGAGAGTACTCAGTTCACGCCTGCAGAAG
TGATTGGTATTGCCACTGTGAAGGCCTTGTCGGGGGGCTCGTTTTTGGTC
AGTGATGACCTGCAGTCGGTCAGCCATCGACGAATGCGAATCGCTCAAGT
TATGCTGCCCGTGATAGGTCGCGCGGCTATCGCACTGGATTTGTTGGAGC
GTGAAATGCCTGAAATTCTCCGCTTGTACGTAGATCAGGACTCTTTCAGT
GAAGAGACAAGCATGTGTCATGCAGCAAACACCTTTTTCAGTCACCATGT
GCCGCAAGATCCTTGGGTTGTGGTAGGATTCTGCAACTGGGACGATGCCA
AGAAACATTCGATGCATCCATACAAGTCTATATTGCGGCCGCTACTAGTT
GATGTGGGTCCTGTCATTATCCTGCACATTTTCGAGTTTTGGACGTCAAA
ATACTTTCAGGTCCGACTGAACCTGGATTTGAACCCCGATGCTCTCATGA
GCACCGCTGATTTTTTTGATGGGATGGACGGAGGAGAAATACAACCTCAC
TCGGCACGTCTCTATGCTATGCGGGTTGATCCACGTCAGATCCCTTCGGC
ACTGACGTCCACATCCCAGGGAGCCGAAAGTGCTCGGGGGTCAACGATGC
GTCGAGCTCCCTTGTATCTTGGGTCAGATGTGCACTTTTCATGCGGGTGG
GAGCTCAGAAAATGTATATGGGGAGAAGAATCGGATTATCTTGATAAAGC
GAAGGTCACAAGAGTATCGGTGCATGTGGTTATTGATGCGGGAAAAGTCG
TGGATGGAACTTCCCATCATATTTGGTTAGATTTGCCCGGGTCAGAAGAT
AGTATAAAATTGGATGGCGCACCAGAGGGGTCAGAAAGGGTGAACTTTTC
TGTAAAAGGGATTTATGAAGGCTTGGAAGAGAGCACTGCACCGTCACTCC
CCACCTTGTTTTCGGGAAAACACCGGTCGGAAGGCGCGCTGGCAACGGCG
GCTCCCCGATCTCCCTCAATACGGCGCACCGTTTGGAAGATTCGTTTTCC
AGAAGGTCACTCGCAAAGGATTTCTTGGACGCTGAATTACATAAGTACCT
TTGACCAAGATGACCAAATTCGAAAGGATGTACAAAAAAAGTAG
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protein sequence of rna347

>rna347-protein ID=rna347-protein|Name=rna347|organism=Nannochloropsis gaditana|type=polypeptide|length=292bp
MNRHILVRTVIFLCLIHLLNSFCPVSLHRESIYSVRFKFRSIWGVYISPP
FARHRSWNPFHKTVVSSTSNNAINSKHGSKCQAVTRLEVKFLTSNPLKTR
EVQALLAEGGLQVPFDIVTLDIELPELQETPLVIAIEKTRLAAQAVQGPV
LVEDTCLCFDALGDLPGPYIKHFLDQLGPEGLFRMIENYEDHSAKAVCNV
GFSPGPGCQPLIFTGITYGEIVRPEEGDDGFGWDTCFAPSGFNSTFSKMT
VEQKNAISHREAKQEKPYFSNLVARVHMKKKRRRIPMPLHCS
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mRNA from alignment at CM002455.1:854101..855031-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna347 ID=rna347|Name=rna347|organism=Nannochloropsis gaditana|type=mRNA|length=931bp|location=Sequence derived from alignment at CM002455.1:854101..855031- (Nannochloropsis gaditana)
ATGAACAGACATATTTTGGTGCGAACAGTGATATTTTTATGTCTGATTCA
CCTTCTTAATTCTTTCTGCCCAGTATCCTTGCACCGGGAGTCAATCTACT
CTGTGCGGTTTAAATTTCGGTCAATTTGGGGGGTATACATCAGTCCACCT
TTTGCTCGACACAGATCGTGGAACCCATTTCATAAGACTGTAGTGTCGAG
TACTTCGAACAATGCGATAAATAGTAAGCATGGAAGCAAATGTCAAGCTG
TGACTCGCTTAGAGGTAAAATTTTTGACAAGTAATCCATTGAAGACAAGG
GAGGTACAGGCTTTGTTAGCGGAAGGGGGCCTCCAAGTGCCTTTCGACAT
TGTGACATTGGACATTGAGTTACCGGAACTACAAGAGACACCACTCGTGA
TCGCAATTGAGAAGACACGGCTTGCTGCGCAAGCCGTACAGGGTCCTGTT
CTCGTTGAGGATACCTGCCTCTGCTTCGACGCGCTTGGCGATTTGCCGGG
GCCGTACATTAAGCACTTTTTGGATCAACTCGGTCCTGAAGGCCTATTTA
GAATGATAGAAAATTACGAAGATCACTCAGCGAAAGCCGTTTGCAATGTG
GGTTTCAGCCCAGGACCAGGGTGTCAACCACTGATCTTTACCGGAATCAC
GTATGGAGAAATAGTCCGGCCTGAAGAAGGGGATGACGGTTTTGGATGGG
ACACATGTTTCGCTCCCTCTGGCTTCAATTCGACGTTCTCAAAGATGACT
GTAGAGCAAAAGAATGCGATATCGCACCGGTCGATGGCTTTGCGACAATT
TCAAAAATATATTGCGGATAATTGGTTGGAGGGAAGCCAAACAGGAGAAG
CCATATTTCTCTAATCTAGTAGCGCGAGTGCACATGAAAAAAAAGCGGCG
CAGAATACCTATGCCTCTCCACTGTAGTTAA
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Coding sequence (CDS) from alignment at CM002455.1:854101..855031-

>rna347 ID=rna347|Name=rna347|organism=Nannochloropsis gaditana|type=CDS|length=1758bp|location=Sequence derived from alignment at CM002455.1:854101..855031- (Nannochloropsis gaditana)
GGAAGCCAAACAGGAGAAGCCATATTTCTCTAATCTAGTAGCGCGAGTGC
ACATGAAAAAAAAGCGGCGCAGAATACCTATGCCTCTCCACTGTAGTTAA
ATGAACAGACATATTTTGGTGCGAACAGTGATATTTTTATGTCTGATTCA
CCTTCTTAATTCTTTCTGCCCAGTATCCTTGCACCGGGAGTCAATCTACT
CTGTGCGGTTTAAATTTCGGTCAATTTGGGGGGTATACATCAGTCCACCT
TTTGCTCGACACAGATCGTGGAACCCATTTCATAAGACTGTAGTGTCGAG
TACTTCGAACAATGCGATAAATAGTAAGCATGGAAGCAAATGTCAAGCTG
TGACTCGCTTAGAGGTAAAATTTTTGACAAGTAATCCATTGAAGACAAGG
GAGGTACAGGCTTTGTTAGCGGAAGGGGGCCTCCAAGTGCCTTTCGACAT
TGTGACATTGGACATTGAGTTACCGGAACTACAAGAGACACCACTCGTGA
TCGCAATTGAGAAGACACGGCTTGCTGCGCAAGCCGTACAGGGTCCTGTT
CTCGTTGAGGATACCTGCCTCTGCTTCGACGCGCTTGGCGATTTGCCGGG
GCCGTACATTAAGCACTTTTTGGATCAACTCGGTCCTGAAGGCCTATTTA
GAATGATAGAAAATTACGAAGATCACTCAGCGAAAGCCGTTTGCAATGTG
GGTTTCAGCCCAGGACCAGGGTGTCAACCACTGATCTTTACCGGAATCAC
GTATGGAGAAATAGTCCGGCCTGAAGAAGGGGATGACGGTTTTGGATGGG
ACACATGTTTCGCTCCCTCTGGCTTCAATTCGACGTTCTCAAAGATGACT
GTAGAGCAAAAGAATGCGATATCGCACCGGGAAGCCAAACAGGAGAAGCC
ATATTTCTCTAATCTAGTAGCGCGAGTGCACATGAAAAAAAAGCGGCGCA
GAATACCTATGCCTCTCCACTGTAGTTAAATGAACAGACATATTTTGGTG
CGAACAGTGATATTTTTATGTCTGATTCACCTTCTTAATTCTTTCTGCCC
AGTATCCTTGCACCGGGAGTCAATCTACTCTGTGCGGTTTAAATTTCGGT
CAATTTGGGGGGTATACATCAGTCCACCTTTTGCTCGACACAGATCGTGG
AACCCATTTCATAAGACTGTAGTGTCGAGTACTTCGAACAATGCGATAAA
TAGTAAGCATGGAAGCAAATGTCAAGCTGTGACTCGCTTAGAGGTAAAAT
TTTTGACAAGTAATCCATTGAAGACAAGGGAGGTACAGGCTTTGTTAGCG
GAAGGGGGCCTCCAAGTGCCTTTCGACATTGTGACATTGGACATTGAGTT
ACCGGAACTACAAGAGACACCACTCGTGATCGCAATTGAGAAGACACGGC
TTGCTGCGCAAGCCGTACAGGGTCCTGTTCTCGTTGAGGATACCTGCCTC
TGCTTCGACGCGCTTGGCGATTTGCCGGGGCCGTACATTAAGCACTTTTT
GGATCAACTCGGTCCTGAAGGCCTATTTAGAATGATAGAAAATTACGAAG
ATCACTCAGCGAAAGCCGTTTGCAATGTGGGTTTCAGCCCAGGACCAGGG
TGTCAACCACTGATCTTTACCGGAATCACGTATGGAGAAATAGTCCGGCC
TGAAGAAGGGGATGACGGTTTTGGATGGGACACATGTTTCGCTCCCTCTG
GCTTCAATTCGACGTTCTCAAAGATGACTGTAGAGCAAAAGAATGCGATA
TCGCACCG
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Synonyms
Publications