rna3466, rna3466 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3466
Unique Name	rna3466
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2247
Alignment location	CM002461.1:484130..485606 +

Link to JBrowse

Properties


Property Name	Value
Product	abc transporter aaa atpase
Orig transcript id	gnl\|cribi\|Naga_100010g19.6131.mrna
Orig protein id	gnl\|cribi\|Naga_100010g19.6131
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:484130..485606 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g19	gene3340	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3466	rna3466-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27161.1	cds3457	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:484130..485606+
coding sequence from alignment at CM002461.1:484130..485606+

mRNA sequence

>rna3466 ID=rna3466|Name=rna3466|organism=Nannochloropsis gaditana|type=mRNA|length=2247bp
ATGACTTTTCCTGGCCCCAGCAGCGGCAACGTGAACGGCCCTGTAATACT
GCAGCCCTTGGATGTCATGGTCTCGAATGCAACCGAGACGCCACCGCCTG
GTCCTGAGAGTGTGTGGACACGGCCCGTCCTGGGCATCAACACGTTGCTG
CATGTCCCGAGGTTTTCTGATTGGAGCGGTGGGGATGCTACACGCGATGG
CTTGGGCGGCGTTGCTGTTTTATTCGGAGGGAAAATAACTCAGGTGGGCA
ATGTGGGGGCGCTTCAGTTCCCGAAGAACAGCCACTATCACCTTCAAGAA
GGCTCTTCATGGTTCAAAGGGGTCTCGGAAGCGGCTGTGGAGGCTCAGTC
ACTAATAAGCATGAAAGATGCGGATTTGCAAGGGCCTGAATGCTGGGAAA
GCGAGACAGAGAGCTTGCTACGGTCGGAAGCTCTGGGATTGCCGGTGGGC
GGGCACGGCGCGAGCATGAGTTTTTGCTGCTTCGTGGGGTCCCTATGCCC
ATTTGAGGGTGTGGCAGTGCTATGTCCTCTAGAAGGGGGCTACTTTTGCC
TTCCGAATATGACGCGACCCGAGTGTTGTGCCGAGGGTCACTACTGTCCA
ACGCCCGGAGTCGTGATGATATGCGAGCAGGGAGGGTACTGTCCCGTCGG
AAGCAGCGCCATCGTGCCCTGTACTTGGTGGATGTGGTGCAGGAAGCCTG
GACTCAAGCGCCCCGATAAGATAGCAGCAGGGGTAGTAGCCCTTGTTCTT
GTCTTCAGCACATTTGCGGCATTGGCAGTCTTGAACAAAATCTTTCTTCG
TTGTCGTTTTTACTACCGCCAAAGCCGCGACACGGAGAGGCGAAAGCGAG
GCCTTTTGACTAGTCGAGGCACGCATTATCAAGAGCTGCACGAGCCCTTG
TTACAGATTAAAGAGATCTTTGATCGCGAAAAGGATGGTGAAAAAAACAG
TGACAACATCAGCAGCGCCAATCACAGCAACAAAATCAAACAAACCCAGA
CAGCAATATCCACGCTAGGGTCGACGAAATCGACCACAACCCCCCTGCGG
TCTGCAAAGAGGAACAGCATTAGCGGGGAAGAGGAAGGCCCTGGTGTCGC
CCGCCCAAGCCTTGGTGGCCGTTCAAGCGTAGGGCCCGTGCTGCGGGAAC
GGCACAAGGTGGACCGCATAGACCTGCAGTTTCGGGATTTGACTGTGGAG
CTACCCGGCGGCCGGCGCAAAGTGCTGAATGGAGTGACGGGTGGCTTCCG
CTCTGGGCGTGTGACGGCGGTAATGGGCCCGTCAGGATGCGGCAAAACCA
CGCTAATCTCAGCCCTTTCCAATCGGCTAGGACTGGGCACAAGGGTAATA
GGCCGGACCTTTATCAACGGAAGTCCCGAGTCCTCTACAGCCCTGCATGA
CGTCATGGGTTTTGTCCCGCAAGATGATATTATGTACGAAGATTTGACTG
TCAAGGAAAACCTTCTGTACTGCTGCCAACTCCGCGCGGATCCCAGCATG
AGCCGAGCCGAGCAGCGGCAGCATGTGAATCGTGTTATCGATTCATTGGG
CCTTTTCCCGAGCCGGCACAGCCTTATCGGATCAACAGAGGACCGTGGGA
TCTCGGGCGGCCAGAGGAAGCGAGTGAACGTGGGCATGGAACTGACGAGC
AAACCTCTCGTGCTCTTCCTCGACGAGCCCACGAGCGGACTTGACAGCAC
AACTTCCGCCGAACTCATGCAGTATCTGCATCGTCTTACGGGCACGGGGC
TGACCATTGCAGCAGTCATACACCAGCCTCGCATTGAAGTCTTTCTCGGC
GTCGATGACGTGATTTTCTTGGGACGTGGTGGCCGAGTAGCTTACTACGG
TTCCGCACGGGACGCTGTACAATATTTTACTGAGCAAGGCTTTCCTTTTG
AACCAACTGTAAATCCAGCCGATCGCATCCTTGATATCATCACGAAAGCC
GACGACTCCCTTTACGAGGCCTGGCAGATATTTTCTTCTTCCTCCGCGAG
GAATGGCTCAGACCTGCGACGAGGGGATCTATTCGGATACTGGGTTCCTT
CGGAAGCAGGCAACGTCGGCGACGACGGAGTCGACGGCGCTGAGGATTGG
AGGCGCTCCCTCAGCACGGGTAGCAGCAGCAGTGGGAGCAGCATCTACCG
ATCTGGGTGCCATACTTCGGCGTCTCAGTATGGTGGGAAAAAAAGAGCAA
TATCAACACAGTCAGCGGTGGAACATGGGCGGAAATTTCGCAATTGA

protein sequence of rna3466

>rna3466-protein ID=rna3466-protein|Name=rna3466|organism=Nannochloropsis gaditana|type=polypeptide|length=471bp
MDSLLGVVYEEQLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAML
MVFGLLVGLFDLGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAG
ISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAA
WVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGK
MGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGFVSEALTQGTL
PQNFEARVVDTEVAHCQQMLINICILYLGTAMVLMWLSGRYRARMIGWDY
FKVGLKQWRARLRDRFYGFLQRHQDWLPRWVISLAVARQHGARTGDLYDN
DNEEEAEIFEDWEEGDIADTGRREREKEGHDVTPARTAEAVVNVKSRSSS
EGGNEPLHHLIENLINAMVEARRKRKMDTHRNKFELKNVRKVNKAVYTPL
VSDKCAGHHIIDWNKAKHRRN

mRNA from alignment at CM002461.1:484130..485606+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3466 ID=rna3466|Name=rna3466|organism=Nannochloropsis gaditana|type=mRNA|length=1477bp|location=Sequence derived from alignment at CM002461.1:484130..485606+ (Nannochloropsis gaditana)
ATGGACTCGCTGTTGGGGGTGGTCTATGAAGAACAGCTTCCGCAACGGCG
ATATCCCGCTTTTTACTCGCAAGTGTGGAGCTGCTTGAGCCGCAGCCTGG
TCCAACAGCACAATAATCTCGGGGTCGTGAGACAAGACTTAGCCATGCTG
ATGGTTTTCGGTTTGCTTGTCGGCCTGTTTGACCTTGGTGTCAAGCAGTA
CGAGCTTTCAGTCCTCTGCATGGGCCTAACTTCTACGCTAACAGGCGTTC
GATTCTTTTCTGCTGAACGTGTGGTGTTTTGGCGGGAGTGCTCGGCGGGT
ATCTCAATTCCTGCGTACTTCCTGGGCAAAGTCCTCTCAGCGTTACCGTG
TACAACGCTGTATCCCCTGGCTTATCTCTCCTTTTACTACAACATGGGTT
TCCCGCGTGTTTCCTTTATTTTCTACTATCTGATCCTCCTTTGGGCGGCG
TGGGTCTGCTTCGGCGTGGGAGTCATCATGTCCCTGCTTCTTGAGCCCAA
GAATGCACAAATTGGTGGCGTAGTCATCGCTCTTGtgggcttcctcttcg
gcgGCCACACCCCAGATGTGAAAACCTTGCAGACGAGCCTTCCCGGCAAG
ATGGGAATGTGGCTTTCGTATGTCCGCTGGTCCATCGGTGCTCTATTCCT
GCAGGACGCCTCACTCGCTCCGCAATGTCAAGCTCTAGCCTCGGTGGGTG
CATTGGCCTCTGAAGGATTCGTCAGTGAAGCCTTGACTCAGGGCACTCTT
CctcaaaattttgaagcCCGGGTGGTGGACACAGAGGTCGCGCATTGCCA
GCAGATGCTCATCAATATTTGCATCCTCTATTTGGGCACAGCAATGGTCC
TTATGTGGCTCTCGGGCAGGTATCGAGCTCGCATGATTGGATGGGACTAT
TTCAAGGTAGGCTTGAAGCAGTGGCGTGCGCGCCTTCGCGATCGTTTTTA
CGGTTTTTTGCAGCGGCATCAAGACTGGTTACCTCGATGGGTCATTTCCT
TGGCTGTGGCTCGGCAGCACGGTGCCAGGACGGGAGACTTGTACGATAAC
GataacgaggaggaggctgagatATTTGAGGactgggaagagggcgacaT
TGCTGAtacggggagaagggagcgcgagaaagagggacaCGATGTGACGC
CAGCACGGACAGCGGAAGCGGTTGTAAATGTTAAGTCGCGGAGTAGCAGT
GAAGGTGGAAACGAGGTCGCGGGATTACTTCGGATACCCCCAAAAAGCAT
AGGTACACCGCCCCCGACCTTGTCAGCCTCTTCACCACCTCATCGAGAAT
CTGATCAATGCGATGGTAGAGgcgcgaagaaagaggaagatggaCACGCA
CCGGAACAAGTTTGAGCTAAAGAACGTGAGGAAAGTGAATAAAGCTGTTT
ATACCCCCCTTGTTTCAGATAAATGTGCAGGACATCACATTATAGACTGG
AATAAGGCGAAGCATAGGCGCAATTGA

Coding sequence (CDS) from alignment at CM002461.1:484130..485606+

>rna3466 ID=rna3466|Name=rna3466|organism=Nannochloropsis gaditana|type=CDS|length=2832bp|location=Sequence derived from alignment at CM002461.1:484130..485606+ (Nannochloropsis gaditana)
ATGGACTCGCTGTTGGGGGTGGTCTATGAAGAACAGCTTCCGCAACGGCG
ATATCCCGCTTTTTACTCGCAAGTGTGGAGCTGCTTGAGCCGCAGCCTGG
TCCAACAGCACAATAATCTCGGGGTCGTGAGACAAGACTTAGCCATGCTG
ATGGTTTTCGGTTTGCTTGTCGGCCTGTTTGACCTTGGTGTCAAGCAGTA
CGAGCTTTCAGTCCTCTGCATGGGCCTAACTTCTACGCTAACAGGCGTTC
GATTCTTTTCTGCTGAACGTGTGGTGTTTTGGCGGGAGTGCTCGGCGGGT
ATCTCAATTCCTGCGTACTTCCTGGGCAAAGTCCTCTCAGCGTTACCGTG
TACAACGCTGTATCCCCTGGCTTATCTCTCCTTTTACTACAACATGGGTT
TCCCGCGTGTTTCCTTTATTTTCTACTATCTGATCCTCCTTTGGGCGGCG
TGGGTCTGCTTCGGCGTGGGAGTCATCATGTCCCTGCTTCTTGAGCCCAA
GAATGCACAAATTGGTGGCGTAGTCATCGCTCTTGtgggcttcctcttcg
gcgGCCACACCCCAGATGTGAAAACCTTGCAGACGAGCCTTCCCGGCAAG
ATGGGAATGTGGCTTTCGTATGTCCGCTGGTCCATCGGTGCTCTATTCCT
GCAGGACGCCTCACTCGCTCCGCAATGTCAAGCTCTAGCCTCGGTGGGTG
CATTGGCCTCTGAAGGATTCGTCAGTGAAGCCTTGACTCAGGGCACTCTT
CctcaaaattttgaagcCCGGGTGGTGGACACAGAGGTCGCGCATTGCCA
GCAGATGCTCATCAATATTTGCATCCTCTATTTGGGCACAGCAATGGTCC
TTATGTGGCTCTCGGGCAGGTATCGAGCTCGCATGATTGGATGGGACTAT
TTCAAGGTAGGCTTGAAGCAGTGGCGTGCGCGCCTTCGCGATCGTTTTTA
CGGTTTTTTGCAGCGGCATCAAGACTGGTTACCTCGATGGGTCATTTCCT
TGGCTGTGGCTCGGCAGCACGGTGCCAGGACGGGAGACTTGTACGATAAC
GataacgaggaggaggctgagatATTTGAGGactgggaagagggcgacaT
TGCTGAtacggggagaagggagcgcgagaaagagggacaCGATGTGACGC
CAGCACGGACAGCGGAAGCGGTTGTAAATGTTAAGTCGCGGAGTAGCAGT
GAAGGTGGAAACGAGCCTCTTCACCACCTCATCGAGAATCTGATCAATGC
GATGGTAGAGgcgcgaagaaagaggaagatggaCACGCACCGGAACAAGT
TTGAGCTAAAGAACGTGAGGAAAGTGAATAAAGCTGTTTATACCCCCCTT
GTTTCAGATAAATGTGCAGGACATCACATTATAGACTGGAATAAGGCGAA
GCATAGGCGCAATTGAATGGACTCGCTGTTGGGGGTGGTCTATGAAGAAC
AGCTTCCGCAACGGCGATATCCCGCTTTTTACTCGCAAGTGTGGAGCTGC
TTGAGCCGCAGCCTGGTCCAACAGCACAATAATCTCGGGGTCGTGAGACA
AGACTTAGCCATGCTGATGGTTTTCGGTTTGCTTGTCGGCCTGTTTGACC
TTGGTGTCAAGCAGTACGAGCTTTCAGTCCTCTGCATGGGCCTAACTTCT
ACGCTAACAGGCGTTCGATTCTTTTCTGCTGAACGTGTGGTGTTTTGGCG
GGAGTGCTCGGCGGGTATCTCAATTCCTGCGTACTTCCTGGGCAAAGTCC
TCTCAGCGTTACCGTGTACAACGCTGTATCCCCTGGCTTATCTCTCCTTT
TACTACAACATGGGTTTCCCGCGTGTTTCCTTTATTTTCTACTATCTGAT
CCTCCTTTGGGCGGCGTGGGTCTGCTTCGGCGTGGGAGTCATCATGTCCC
TGCTTCTTGAGCCCAAGAATGCACAAATTGGTGGCGTAGTCATCGCTCTT
GtgggcttcctcttcggcgGCCACACCCCAGATGTGAAAACCTTGCAGAC
GAGCCTTCCCGGCAAGATGGGAATGTGGCTTTCGTATGTCCGCTGGTCCA
TCGGTGCTCTATTCCTGCAGGACGCCTCACTCGCTCCGCAATGTCAAGCT
CTAGCCTCGGTGGGTGCATTGGCCTCTGAAGGATTCGTCAGTGAAGCCTT
GACTCAGGGCACTCTTCctcaaaattttgaagcCCGGGTGGTGGACACAG
AGGTCGCGCATTGCCAGCAGATGCTCATCAATATTTGCATCCTCTATTTG
GGCACAGCAATGGTCCTTATGTGGCTCTCGGGCAGGTATCGAGCTCGCAT
GATTGGATGGGACTATTTCAAGGTAGGCTTGAAGCAGTGGCGTGCGCGCC
TTCGCGATCGTTTTTACGGTTTTTTGCAGCGGCATCAAGACTGGTTACCT
CGATGGGTCATTTCCTTGGCTGTGGCTCGGCAGCACGGTGCCAGGACGGG
AGACTTGTACGATAACGataacgaggaggaggctgagatATTTGAGGact
gggaagagggcgacaTTGCTGAtacggggagaagggagcgcgagaaagag
ggacaCGATGTGACGCCAGCACGGACAGCGGAAGCGGTTGTAAATGTTAA
GTCGCGGAGTAGCAGTGAAGGTGGAAACGAGCCTCTTCACCACCTCATCG
AGAATCTGATCAATGCGATGGTAGAGgcgcgaagaaagaggaagatggaC
ACGCACCGGAACAAGTTTGAGCTAAAGAACGTGAGGAAAGTGAATAAAGC
TGTTTATACCCCCCTTGTTTCAGATAAATGTGCAGGACATCACATTATAG
ACTGGAATAAGGCGAAGCATAGGCGCAATTGA

Synonyms

Publications