EWM27161.1, cds3457 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|585109341|gb|EWM27161.1| (abc transporter aaa atpase [Nannochloropsis gaditana]) HSP 1 Score: 978.778 bits (2529), Expect = 0.000e+0 Identity = 471/471 (100.00%), Postives = 471/471 (100.00%), Query Frame = 0
Query: 1 MDSLLGVVYEEQLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFDLGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGFVSEALTQGTLPQNFEARVVDTEVAHCQQMLINICILYLGTAMVLMWLSGRYRARMIGWDYFKVGLKQWRARLRDRFYGFLQRHQDWLPRWVISLAVARQHGARTGDLYDNDNEEEAEIFEDWEEGDIADTGRREREKEGHDVTPARTAEAVVNVKSRSSSEGGNEPLHHLIENLINAMVEARRKRKMDTHRNKFELKNVRKVNKAVYTPLVSDKCAGHHIIDWNKAKHRRN 471
MDSLLGVVYEEQLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFDLGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGFVSEALTQGTLPQNFEARVVDTEVAHCQQMLINICILYLGTAMVLMWLSGRYRARMIGWDYFKVGLKQWRARLRDRFYGFLQRHQDWLPRWVISLAVARQHGARTGDLYDNDNEEEAEIFEDWEEGDIADTGRREREKEGHDVTPARTAEAVVNVKSRSSSEGGNEPLHHLIENLINAMVEARRKRKMDTHRNKFELKNVRKVNKAVYTPLVSDKCAGHHIIDWNKAKHRRN
Sbjct: 1 MDSLLGVVYEEQLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFDLGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGFVSEALTQGTLPQNFEARVVDTEVAHCQQMLINICILYLGTAMVLMWLSGRYRARMIGWDYFKVGLKQWRARLRDRFYGFLQRHQDWLPRWVISLAVARQHGARTGDLYDNDNEEEAEIFEDWEEGDIADTGRREREKEGHDVTPARTAEAVVNVKSRSSSEGGNEPLHHLIENLINAMVEARRKRKMDTHRNKFELKNVRKVNKAVYTPLVSDKCAGHHIIDWNKAKHRRN 471
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|470492579|ref|XP_004346028.1| (ABC transporter, ATPbinding domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440800445|gb|ELR21484.1| ABC transporter, ATPbinding domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 122.479 bits (306), Expect = 5.269e-26 Identity = 79/227 (34.80%), Postives = 118/227 (51.98%), Query Frame = 0
Query: 12 QLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFDLGVKQYELSV------LCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMG--MWLSYVRWSIGALFLQDASLAPQCQALA 230
Q R+ +Q W C R+++Q+ L D ++ GL++GL V+ ++ + +G +T +R F AER VF RE GIS AYFLGK L+ALP + P +LS +Y+ PR +F+ Y ++LL A W GVG ++S++L+P AQ+ VV+ LV G +P L++ L G+ G + SY W ALFL +A P A A
Sbjct: 650 QCLDRQTAGVLAQTWLCTKRAVIQRTRELNTALTDYCLVATAGLVLGLLFHAVELDKVPSVNLFISMALGFAATQQALRLFGAERTVFAREADTGISRLAYFLGKNLAALPDLFILPFIFLSMFYSFSNPRGAFVDYLVLLLAAQWALSGVGHVISVVLDPAKAQLAAVVVTLVLNGISGFSP----LKSEL-GRFGAVCYASYGFWLTEALFLIEAQHYPDIYAPA 871
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|470517118|ref|XP_004353166.1| (ABC transporter, ATPbinding domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440802709|gb|ELR23638.1| ABC transporter, ATPbinding domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 121.709 bits (304), Expect = 1.028e-25 Identity = 77/225 (34.22%), Postives = 113/225 (50.22%), Query Frame = 0
Query: 12 QLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFDLGVKQYELSV------LCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMG--MWLSYVRWSIGALFLQDASLAPQCQA 228
Q R+ +Q W C R+++Q+ L D ++ GL++GL V+ ++ + +G +T +R F AER VF RE GIS AYFLGK L+ALP + P +LS +Y+ PR F+ Y ++LL A W GVG ++S++L+P AQ+ VV+ LV G +P L G+ G + SY W ALFL +A P A
Sbjct: 647 QCLDRKTAGVLAQTWLCTKRAVIQRTRELNTALTDYCLVATAGLVLGLLFHAVQLQKVPSVNLFISMALGFAATQQALRLFGAERAVFAREADTGISRLAYFLGKNLAALPDLFILPFIFLSMFYSFSSPRGGFVDYLVLLLAAQWALSGVGHVISVVLDPAKAQLAAVVVTLVLNGISGFSPHKSEL-----GRFGAVCYASYGFWLTEALFLIEAQHYPDIYA 866
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|1004144811|gb|KXZ52790.1| (hypothetical protein GPECTOR_8g178 [Gonium pectorale]) HSP 1 Score: 119.783 bits (299), Expect = 5.671e-25 Identity = 78/237 (32.91%), Postives = 123/237 (51.90%), Query Frame = 0
Query: 16 RRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFD------LGVKQYE-LSVLCMGLTSTLTGVRFFSAERVVFW-RECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGK---MGM-WLSYVRWSIGALFLQDASLAPQCQALASVGALASEGF 240
R P+ Q++ RS + N D++++++ GL++G L + + L VL LTS +TG+R F E+++F RE AG+S+ ++ LG++ LYP YL FYY M F YYL+L + AW FGVG + S+LLE NA +GG+ + L+ FGG + S G MG+ W+SY RW++ A+F+ ++ P + GA++ GF
Sbjct: 3094 RALPSVGRQMYIVFRRSAAKFLNERAYALLDISLVIMLGLVMGAIQGHTSSLLKIPETSILVVLAFALTSLVTGLRTFGQEQLIFLTREAQAGLSVVSWMLGRIGWDAILQALYPAVYLGFYYAMTVFDTPFELYYLVLFFVAWWGFGVGYLFSVLLESNNALLGGLSVTLI---FGGIINGINPSVASTDGNYLLMGLQWMSYTRWAVEAVFIATSTPTPNALVFLTAGAMSQLGF 3327
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|1191047902|ref|XP_020901637.1| (ABC transporter G family member 24-like [Exaiptasia pallida] >gi|999974378|gb|KXJ13552.1| putative white-brown complex-like protein 30 [Exaiptasia pallida]) HSP 1 Score: 110.153 bits (274), Expect = 5.270e-22 Identity = 71/230 (30.87%), Postives = 114/230 (49.57%), Query Frame = 0
Query: 5 LGVVYEEQLP---QRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLF--DLGVKQY----ELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQT-SLPGKMGMWLSYVRWSIGALFLQDASLAP 224
L + Y + P R+ P F+ Q+ R ++ Q + + D ++++ G ++G + + Q+ LS L +GLT+ L +R F R FWRE S GI+ +YFL L LP + P+ YLS Y + PR F+Y+ +L A + C G G +S L PKN+Q+ V L+ L G +P + + + G + LSY RW + A+F ++A P
Sbjct: 593 LSIDYMQNAPTDQHRQLPGFFKQLMHFCIREVILQFRLVKSLLMDQFLVLLAGGILGALRRNAPLDQFFVLQTLSSLAIGLTAMLASLRCFGNNRTTFWRESSTGINRLSYFLAVNLVQLPIIIITPMTYLSLLYPLIAPRGYLAFHYMAVLGAQFACTGTGYAISTLFNPKNSQMASVTFTLILSLVSGLSPSLCDMNKFTFIGPVFYNLSYSRWFVEAMFEKEAVRFP 822
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|1176119531|ref|XP_020631018.1| (ABC transporter G family member 24-like [Orbicella faveolata]) HSP 1 Score: 108.997 bits (271), Expect = 1.418e-21 Identity = 65/192 (33.85%), Postives = 100/192 (52.08%), Query Frame = 0
Query: 39 NLGVVRQDLAMLMVFGLLVGLFDLGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQT-SLPGKMGMWLSYVRWSIGALFLQDASLAPQCQAL 229
LG +R++ + F L+ LS L +GLT+ L+ +R F + R FWRE ++G++ +YF+ ++ +P + PL YLS Y + PR F F+Y L A + C GVG +S + PKN+Q+ V AL+ L G +P + + S G + LSY RW + ALF ++A P AL
Sbjct: 673 TLGALRKEAPLDEFFTLVT-----------LSSLAIGLTAMLSSLRCFGSNRATFWREAASGVNRVSYFVAVNVAQIPIILITPLVYLSLLYPLVSPRGYFRFHYAATLGAQFACTGVGYCISAIFNPKNSQMASVTFALICSLVSGSSPTLCKMDGYSFFGPLLYNLSYCRWYLEALFEKEALRYPDVLAL 853
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|168042595|ref|XP_001773773.1| (ATP-binding cassette transporter, subfamily G, member 25, group WBC protein PpABCG25 [Physcomitrella patens] >gi|162674888|gb|EDQ61390.1| ATP-binding cassette transporter, subfamily G, member 25, group WBC protein PpABCG25, partial [Physcomitrella patens]) HSP 1 Score: 107.071 bits (266), Expect = 7.138e-21 Identity = 64/236 (27.12%), Postives = 123/236 (52.12%), Query Frame = 0
Query: 11 EQLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLF------DLGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGF 240
+ L R+ P F+ Q+ + L R Q+ + + QD +L++ G +G+ +LG + Y +++ + L + +R FSA+++ FWRE ++G++ A++L K ++ + + PL YLS +Y + PR SF+ Y++ L + G+ I+++LLEP AQ+ V + ++ L V + +T + + SY R+++ A L +A + G LAS+G+
Sbjct: 731 DNLSGRQTPGFFRQLRTILHRVAKQRFREVKLHIQDYVILLIAGGCLGVLSNMDDTNLGSEGYHFTIIALALLIMIASLRTFSADKIQFWRESASGVNRLAFYLAKDMADIFNVVMKPLIYLSMFYFLSNPRSSFLSNYVVTLVLVYCVTGLAYILAILLEPAPAQLCAVFVPVIASLI------VSSKKTRFLPTLS-YFSYARYALEAYVLANAERYEGVWVITRCGLLASQGY 959
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|302793714|ref|XP_002978622.1| (hypothetical protein SELMODRAFT_443919 [Selaginella moellendorffii] >gi|300153971|gb|EFJ20608.1| hypothetical protein SELMODRAFT_443919 [Selaginella moellendorffii]) HSP 1 Score: 106.686 bits (265), Expect = 1.013e-20 Identity = 69/231 (29.87%), Postives = 111/231 (48.05%), Query Frame = 0
Query: 16 RRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFD------LGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGF 240
R+ P F+SQ L R Q+ ++ QD +L + G+ VGL LG Y S++ + L ++ +R FSA+++ FWRE ++GI+ A+FL K T + P YLS +Y PR +FI Y+I L + G+ + ++L++P AQ+ V +V L T L+ + G SY RW++ A + +A + GALA G+
Sbjct: 804 RKIPGFFSQFSLILGRVSKQRFREARLLVQDYIILFLAGICVGLLADAKDQALGANGYPYSIIALSLLCMISALRTFSADKLQFWRESASGINRVAFFLAKDTVDHFNTVVKPFVYLSMFYFFCNPRSTFISNYIITLAFIYCITGIAYVFAILMQPSTAQLCCVFFPVVSTLVATRTGATGILKVLIQG------SYARWALEAYVVANAQRYSGVWLITRCGALARSGY 1028
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|302774252|ref|XP_002970543.1| (ATP-binding cassette transporter [Selaginella moellendorffii] >gi|300162059|gb|EFJ28673.1| ATP-binding cassette transporter [Selaginella moellendorffii]) HSP 1 Score: 106.301 bits (264), Expect = 1.060e-20 Identity = 69/231 (29.87%), Postives = 111/231 (48.05%), Query Frame = 0
Query: 16 RRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFD------LGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGF 240
R+ P F+SQ L R Q+ ++ QD +L + G+ VGL LG Y S++ + L ++ +R FSA+++ FWRE ++GI+ A+FL K T + P YLS +Y PR +FI Y+I L + G+ + ++L++P AQ+ V +V L T L+ + G SY RW++ A + +A + GALA G+
Sbjct: 805 RKIPGFFSQFSLILGRVSKQRFREARLLVQDYIILFLAGICVGLLADAKDQALGANGYPYSIIALSLLCMISALRTFSADKLQFWRESASGINRVAFFLAKDTVDHFNTVVKPFVYLSMFYFFCNPRSTFISNYIITLAFIYCITGIAYVFAILMQPSTAQLCCVFFPVVSTLVATRTGATGILKVLIQG------SYARWALEAYVVANAQRYSGVWLITRCGALARSGY 1029
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|659113310|ref|XP_008456508.1| (PREDICTED: ABC transporter G family member 28-like isoform X3 [Cucumis melo]) HSP 1 Score: 97.0561 bits (240), Expect = 1.178e-17 Identity = 68/245 (27.76%), Postives = 112/245 (45.71%), Query Frame = 0
Query: 2 DSLLGVVYEEQLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFD------LGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGF 240
D L + + L R+ P Q L R Q+ + + D +L++ G +G GV Y +V+ + L + +R FS +++ +WRE S+G+S AYFL K T + PL YLS +Y+ PR SF +Y++LL + G+ +++L +P AQ+ ++ +V LF + QTS K Y +W++ AL + +A + GAL GF
Sbjct: 649 DKLRMHLKTKDLSHRKTPGILKQYRYFLGRIGKQRLRDSKIQVIDYMILLLAGACLGSISNVSDQSFGVSGYAFTVIAVSLLGKIAALRTFSLDKLEYWRESSSGMSSLAYFLAKDTVDHFNTVIKPLVYLSMFYSFTNPRSSFTDHYVVLLCLLYCVTGIAYALAILFQPGAAQLWSAILPVVLTLF------ITRTQTSSALKTLSDFCYPKWAVEALVISNAERYDGVWLITRCGALNRSGF 887 The following BLAST results are available for this feature:
BLAST of EWM27161.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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