EWM27161.1, cds3457 (CDS) Nannochloropsis gaditana

Overview
NameEWM27161.1
Unique Namecds3457
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:484130..485344 +
Alignment locationCM002461.1:485406..485606 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27161.1
Productabc transporter aaa atpase
Orig transcript idgnl|cribi|Naga_100010g19.6131.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:484130..485344 +
CM002461.1supercontigCM002461.1:485406..485606 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013525ABC_2_trans
Homology
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|585109341|gb|EWM27161.1| (abc transporter aaa atpase [Nannochloropsis gaditana])

HSP 1 Score: 978.778 bits (2529), Expect = 0.000e+0
Identity = 471/471 (100.00%), Postives = 471/471 (100.00%), Query Frame = 0
Query:    1 MDSLLGVVYEEQLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFDLGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGFVSEALTQGTLPQNFEARVVDTEVAHCQQMLINICILYLGTAMVLMWLSGRYRARMIGWDYFKVGLKQWRARLRDRFYGFLQRHQDWLPRWVISLAVARQHGARTGDLYDNDNEEEAEIFEDWEEGDIADTGRREREKEGHDVTPARTAEAVVNVKSRSSSEGGNEPLHHLIENLINAMVEARRKRKMDTHRNKFELKNVRKVNKAVYTPLVSDKCAGHHIIDWNKAKHRRN 471
            MDSLLGVVYEEQLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFDLGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGFVSEALTQGTLPQNFEARVVDTEVAHCQQMLINICILYLGTAMVLMWLSGRYRARMIGWDYFKVGLKQWRARLRDRFYGFLQRHQDWLPRWVISLAVARQHGARTGDLYDNDNEEEAEIFEDWEEGDIADTGRREREKEGHDVTPARTAEAVVNVKSRSSSEGGNEPLHHLIENLINAMVEARRKRKMDTHRNKFELKNVRKVNKAVYTPLVSDKCAGHHIIDWNKAKHRRN
Sbjct:    1 MDSLLGVVYEEQLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFDLGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGFVSEALTQGTLPQNFEARVVDTEVAHCQQMLINICILYLGTAMVLMWLSGRYRARMIGWDYFKVGLKQWRARLRDRFYGFLQRHQDWLPRWVISLAVARQHGARTGDLYDNDNEEEAEIFEDWEEGDIADTGRREREKEGHDVTPARTAEAVVNVKSRSSSEGGNEPLHHLIENLINAMVEARRKRKMDTHRNKFELKNVRKVNKAVYTPLVSDKCAGHHIIDWNKAKHRRN 471          
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|470492579|ref|XP_004346028.1| (ABC transporter, ATPbinding domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440800445|gb|ELR21484.1| ABC transporter, ATPbinding domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 122.479 bits (306), Expect = 5.269e-26
Identity = 79/227 (34.80%), Postives = 118/227 (51.98%), Query Frame = 0
Query:   12 QLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFDLGVKQYELSV------LCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMG--MWLSYVRWSIGALFLQDASLAPQCQALA 230
            Q   R+     +Q W C  R+++Q+   L     D  ++   GL++GL    V+  ++        + +G  +T   +R F AER VF RE   GIS  AYFLGK L+ALP   + P  +LS +Y+   PR +F+ Y ++LL A W   GVG ++S++L+P  AQ+  VV+ LV     G +P    L++ L G+ G   + SY  W   ALFL +A   P   A A
Sbjct:  650 QCLDRQTAGVLAQTWLCTKRAVIQRTRELNTALTDYCLVATAGLVLGLLFHAVELDKVPSVNLFISMALGFAATQQALRLFGAERTVFAREADTGISRLAYFLGKNLAALPDLFILPFIFLSMFYSFSNPRGAFVDYLVLLLAAQWALSGVGHVISVVLDPAKAQLAAVVVTLVLNGISGFSP----LKSEL-GRFGAVCYASYGFWLTEALFLIEAQHYPDIYAPA 871          
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|470517118|ref|XP_004353166.1| (ABC transporter, ATPbinding domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440802709|gb|ELR23638.1| ABC transporter, ATPbinding domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 121.709 bits (304), Expect = 1.028e-25
Identity = 77/225 (34.22%), Postives = 113/225 (50.22%), Query Frame = 0
Query:   12 QLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFDLGVKQYELSV------LCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMG--MWLSYVRWSIGALFLQDASLAPQCQA 228
            Q   R+     +Q W C  R+++Q+   L     D  ++   GL++GL    V+  ++        + +G  +T   +R F AER VF RE   GIS  AYFLGK L+ALP   + P  +LS +Y+   PR  F+ Y ++LL A W   GVG ++S++L+P  AQ+  VV+ LV     G +P    L     G+ G   + SY  W   ALFL +A   P   A
Sbjct:  647 QCLDRKTAGVLAQTWLCTKRAVIQRTRELNTALTDYCLVATAGLVLGLLFHAVQLQKVPSVNLFISMALGFAATQQALRLFGAERAVFAREADTGISRLAYFLGKNLAALPDLFILPFIFLSMFYSFSSPRGGFVDYLVLLLAAQWALSGVGHVISVVLDPAKAQLAAVVVTLVLNGISGFSPHKSEL-----GRFGAVCYASYGFWLTEALFLIEAQHYPDIYA 866          
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|1004144811|gb|KXZ52790.1| (hypothetical protein GPECTOR_8g178 [Gonium pectorale])

HSP 1 Score: 119.783 bits (299), Expect = 5.671e-25
Identity = 78/237 (32.91%), Postives = 123/237 (51.90%), Query Frame = 0
Query:   16 RRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFD------LGVKQYE-LSVLCMGLTSTLTGVRFFSAERVVFW-RECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGK---MGM-WLSYVRWSIGALFLQDASLAPQCQALASVGALASEGF 240
            R  P+   Q++    RS  +  N       D++++++ GL++G         L + +   L VL   LTS +TG+R F  E+++F  RE  AG+S+ ++ LG++        LYP  YL FYY M      F  YYL+L + AW  FGVG + S+LLE  NA +GG+ + L+   FGG    +     S  G    MG+ W+SY RW++ A+F+  ++  P      + GA++  GF
Sbjct: 3094 RALPSVGRQMYIVFRRSAAKFLNERAYALLDISLVIMLGLVMGAIQGHTSSLLKIPETSILVVLAFALTSLVTGLRTFGQEQLIFLTREAQAGLSVVSWMLGRIGWDAILQALYPAVYLGFYYAMTVFDTPFELYYLVLFFVAWWGFGVGYLFSVLLESNNALLGGLSVTLI---FGGIINGINPSVASTDGNYLLMGLQWMSYTRWAVEAVFIATSTPTPNALVFLTAGAMSQLGF 3327          
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|1191047902|ref|XP_020901637.1| (ABC transporter G family member 24-like [Exaiptasia pallida] >gi|999974378|gb|KXJ13552.1| putative white-brown complex-like protein 30 [Exaiptasia pallida])

HSP 1 Score: 110.153 bits (274), Expect = 5.270e-22
Identity = 71/230 (30.87%), Postives = 114/230 (49.57%), Query Frame = 0
Query:    5 LGVVYEEQLP---QRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLF--DLGVKQY----ELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQT-SLPGKMGMWLSYVRWSIGALFLQDASLAP 224
            L + Y +  P    R+ P F+ Q+     R ++ Q   +  +  D  ++++ G ++G    +  + Q+     LS L +GLT+ L  +R F   R  FWRE S GI+  +YFL   L  LP   + P+ YLS  Y +  PR    F+Y+ +L A + C G G  +S L  PKN+Q+  V   L+  L  G +P +  +   +  G +   LSY RW + A+F ++A   P
Sbjct:  593 LSIDYMQNAPTDQHRQLPGFFKQLMHFCIREVILQFRLVKSLLMDQFLVLLAGGILGALRRNAPLDQFFVLQTLSSLAIGLTAMLASLRCFGNNRTTFWRESSTGINRLSYFLAVNLVQLPIIIITPMTYLSLLYPLIAPRGYLAFHYMAVLGAQFACTGTGYAISTLFNPKNSQMASVTFTLILSLVSGLSPSLCDMNKFTFIGPVFYNLSYSRWFVEAMFEKEAVRFP 822          
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|1176119531|ref|XP_020631018.1| (ABC transporter G family member 24-like [Orbicella faveolata])

HSP 1 Score: 108.997 bits (271), Expect = 1.418e-21
Identity = 65/192 (33.85%), Postives = 100/192 (52.08%), Query Frame = 0
Query:   39 NLGVVRQDLAMLMVFGLLVGLFDLGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQT-SLPGKMGMWLSYVRWSIGALFLQDASLAPQCQAL 229
             LG +R++  +   F L+            LS L +GLT+ L+ +R F + R  FWRE ++G++  +YF+   ++ +P   + PL YLS  Y +  PR  F F+Y   L A + C GVG  +S +  PKN+Q+  V  AL+  L  G +P +  +   S  G +   LSY RW + ALF ++A   P   AL
Sbjct:  673 TLGALRKEAPLDEFFTLVT-----------LSSLAIGLTAMLSSLRCFGSNRATFWREAASGVNRVSYFVAVNVAQIPIILITPLVYLSLLYPLVSPRGYFRFHYAATLGAQFACTGVGYCISAIFNPKNSQMASVTFALICSLVSGSSPTLCKMDGYSFFGPLLYNLSYCRWYLEALFEKEALRYPDVLAL 853          
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|168042595|ref|XP_001773773.1| (ATP-binding cassette transporter, subfamily G, member 25, group WBC protein PpABCG25 [Physcomitrella patens] >gi|162674888|gb|EDQ61390.1| ATP-binding cassette transporter, subfamily G, member 25, group WBC protein PpABCG25, partial [Physcomitrella patens])

HSP 1 Score: 107.071 bits (266), Expect = 7.138e-21
Identity = 64/236 (27.12%), Postives = 123/236 (52.12%), Query Frame = 0
Query:   11 EQLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLF------DLGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGF 240
            + L  R+ P F+ Q+ + L R   Q+   + +  QD  +L++ G  +G+       +LG + Y  +++ + L   +  +R FSA+++ FWRE ++G++  A++L K ++ +    + PL YLS +Y +  PR SF+  Y++ L   +   G+  I+++LLEP  AQ+  V + ++  L       V + +T     +  + SY R+++ A  L +A        +   G LAS+G+
Sbjct:  731 DNLSGRQTPGFFRQLRTILHRVAKQRFREVKLHIQDYVILLIAGGCLGVLSNMDDTNLGSEGYHFTIIALALLIMIASLRTFSADKIQFWRESASGVNRLAFYLAKDMADIFNVVMKPLIYLSMFYFLSNPRSSFLSNYVVTLVLVYCVTGLAYILAILLEPAPAQLCAVFVPVIASLI------VSSKKTRFLPTLS-YFSYARYALEAYVLANAERYEGVWVITRCGLLASQGY 959          
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|302793714|ref|XP_002978622.1| (hypothetical protein SELMODRAFT_443919 [Selaginella moellendorffii] >gi|300153971|gb|EFJ20608.1| hypothetical protein SELMODRAFT_443919 [Selaginella moellendorffii])

HSP 1 Score: 106.686 bits (265), Expect = 1.013e-20
Identity = 69/231 (29.87%), Postives = 111/231 (48.05%), Query Frame = 0
Query:   16 RRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFD------LGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGF 240
            R+ P F+SQ    L R   Q+     ++ QD  +L + G+ VGL        LG   Y  S++ + L   ++ +R FSA+++ FWRE ++GI+  A+FL K       T + P  YLS +Y    PR +FI  Y+I L   +   G+  + ++L++P  AQ+  V   +V  L    T     L+  + G      SY RW++ A  + +A        +   GALA  G+
Sbjct:  804 RKIPGFFSQFSLILGRVSKQRFREARLLVQDYIILFLAGICVGLLADAKDQALGANGYPYSIIALSLLCMISALRTFSADKLQFWRESASGINRVAFFLAKDTVDHFNTVVKPFVYLSMFYFFCNPRSTFISNYIITLAFIYCITGIAYVFAILMQPSTAQLCCVFFPVVSTLVATRTGATGILKVLIQG------SYARWALEAYVVANAQRYSGVWLITRCGALARSGY 1028          
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|302774252|ref|XP_002970543.1| (ATP-binding cassette transporter [Selaginella moellendorffii] >gi|300162059|gb|EFJ28673.1| ATP-binding cassette transporter [Selaginella moellendorffii])

HSP 1 Score: 106.301 bits (264), Expect = 1.060e-20
Identity = 69/231 (29.87%), Postives = 111/231 (48.05%), Query Frame = 0
Query:   16 RRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFD------LGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGF 240
            R+ P F+SQ    L R   Q+     ++ QD  +L + G+ VGL        LG   Y  S++ + L   ++ +R FSA+++ FWRE ++GI+  A+FL K       T + P  YLS +Y    PR +FI  Y+I L   +   G+  + ++L++P  AQ+  V   +V  L    T     L+  + G      SY RW++ A  + +A        +   GALA  G+
Sbjct:  805 RKIPGFFSQFSLILGRVSKQRFREARLLVQDYIILFLAGICVGLLADAKDQALGANGYPYSIIALSLLCMISALRTFSADKLQFWRESASGINRVAFFLAKDTVDHFNTVVKPFVYLSMFYFFCNPRSTFISNYIITLAFIYCITGIAYVFAILMQPSTAQLCCVFFPVVSTLVATRTGATGILKVLIQG------SYARWALEAYVVANAQRYSGVWLITRCGALARSGY 1029          
BLAST of EWM27161.1 vs. NCBI_GenBank
Match: gi|659113310|ref|XP_008456508.1| (PREDICTED: ABC transporter G family member 28-like isoform X3 [Cucumis melo])

HSP 1 Score: 97.0561 bits (240), Expect = 1.178e-17
Identity = 68/245 (27.76%), Postives = 112/245 (45.71%), Query Frame = 0
Query:    2 DSLLGVVYEEQLPQRRYPAFYSQVWSCLSRSLVQQHNNLGVVRQDLAMLMVFGLLVGLFD------LGVKQYELSVLCMGLTSTLTGVRFFSAERVVFWRECSAGISIPAYFLGKVLSALPCTTLYPLAYLSFYYNMGFPRVSFIFYYLILLWAAWVCFGVGVIMSLLLEPKNAQIGGVVIALVGFLFGGHTPDVKTLQTSLPGKMGMWLSYVRWSIGALFLQDASLAPQCQALASVGALASEGF 240
            D L   +  + L  R+ P    Q    L R   Q+  +  +   D  +L++ G  +G          GV  Y  +V+ + L   +  +R FS +++ +WRE S+G+S  AYFL K       T + PL YLS +Y+   PR SF  +Y++LL   +   G+   +++L +P  AQ+   ++ +V  LF      +   QTS   K      Y +W++ AL + +A        +   GAL   GF
Sbjct:  649 DKLRMHLKTKDLSHRKTPGILKQYRYFLGRIGKQRLRDSKIQVIDYMILLLAGACLGSISNVSDQSFGVSGYAFTVIAVSLLGKIAALRTFSLDKLEYWRESSSGMSSLAYFLAKDTVDHFNTVIKPLVYLSMFYSFTNPRSSFTDHYVVLLCLLYCVTGIAYALAILFQPGAAQLWSAILPVVLTLF------ITRTQTSSALKTLSDFCYPKWAVEALVISNAERYDGVWLITRCGALNRSGF 887          
The following BLAST results are available for this feature:
BLAST of EWM27161.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109341|gb|EWM27161.1|0.000e+0100.00abc transporter aaa atpase [Nannochloropsis gadita... [more]
gi|470492579|ref|XP_004346028.1|5.269e-2634.80ABC transporter, ATPbinding domain containing prot... [more]
gi|470517118|ref|XP_004353166.1|1.028e-2534.22ABC transporter, ATPbinding domain containing prot... [more]
gi|1004144811|gb|KXZ52790.1|5.671e-2532.91hypothetical protein GPECTOR_8g178 [Gonium pectora... [more]
gi|1191047902|ref|XP_020901637.1|5.270e-2230.87ABC transporter G family member 24-like [Exaiptasi... [more]
gi|1176119531|ref|XP_020631018.1|1.418e-2133.85ABC transporter G family member 24-like [Orbicella... [more]
gi|168042595|ref|XP_001773773.1|7.138e-2127.12ATP-binding cassette transporter, subfamily G, mem... [more]
gi|302793714|ref|XP_002978622.1|1.013e-2029.87hypothetical protein SELMODRAFT_443919 [Selaginell... [more]
gi|302774252|ref|XP_002970543.1|1.060e-2029.87ATP-binding cassette transporter [Selaginella moel... [more]
gi|659113310|ref|XP_008456508.1|1.178e-1727.76PREDICTED: ABC transporter G family member 28-like... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3466rna3466Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications