rna3465, rna3465 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3465
Unique Name	rna3465
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2919
Alignment location	CM002461.1:481858..484104 +

Link to JBrowse

Properties


Property Name	Value
Product	white-brown-complex abc transporter family
Orig transcript id	gnl\|cribi\|Naga_100010g18.6151.mrna
Orig protein id	gnl\|cribi\|Naga_100010g18.6151
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:481858..484104 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g18	gene3339	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3465	rna3465-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27181.1	cds3456	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:481858..484104+
coding sequence from alignment at CM002461.1:481858..484104+

mRNA sequence

>rna3465 ID=rna3465|Name=rna3465|organism=Nannochloropsis gaditana|type=mRNA|length=2919bp
ATGGAGCGTTACCGACAAAATCATCACGCGGGGCCGGGTCAGGAGAAGCT
GTACCGGCCCGAGCTGTTGTCCTCGTCGCAAAAGGCCGCAGACGGCGCGG
CCGACCTGGCCGAATGCTTCCGCGAGGTGCCCGCCATCTTCTTCCACAGG
GATTTCCAGCTCTCCGAACCCGCCCTCTTCGACAGGGTCGTGATCAGGGC
CACGCCGGACACGCAGGAGCGGCTCTCGCAGTATCTGGACGTGGTGGAGA
CATGCCTGCTCAAACAAATCTCCTCCCGCTCTCAGCACTTCTTCGAGGCA
TTGATAACCTTGCAGGACGTCCGGGACCGCCTCGCCCAGGCATGTGGGCA
GGTGCTTCGACTCCGCTCCGGTTTGCATGATATTGACCAGAAAACTGTGC
GGGGCATGATCCGCATTCCACGCCTCGCCCAGCGCAAGGTGAACCTGGCG
GCCCTCCTGGAGAAGCTCCGCCTCCTCCAAGATGTGCAGCGGTCCACCAC
GCTCGTCCAGTCCTTGCTCGGTGCCGGCGATTTTCTTGGGGCTCTGGATG
TCTTGGAGGATGGCCAGGGTCTGAGCGAACATTCTTGTGTGCGCTTGCCC
CTTCAGCAACCGGAGTTGGACGAGGCGTTGAAAGCGCAGCTCGTGCCCCG
GGTGCGGGGGCTGGTGCGCCTCTGTCGGCTGTCCAAGGCGCTTGAGCGGT
ACCGGGGACGGTTGACGGCCTCCTTGAAGGAGGTGGTGAAGACCGTGCTC
ACGGAATACCTGGGTGTTGCGGAATATCAGCGAGGGGAAGATAAGGTTGG
AGCAGACGGGGCTGTGAACACGCCTGCCGAGGCTGCCAGCCCCCCCCTGC
CGGTCAACGGGACCAGCGGCTTGCCGACCGCAGCAGCTGCGGCGACGTCA
ACAGAGGAGAACGCTGGCTTGTTGGGCAAAGGCGTCAGAGCCATGAAAGC
AGAGTCCTTCCTGGGGTGTCTTAAGCTTTGTTTCGAGCAAATGCTCCTCC
CCATGACGGGCGTGGGCCTGATTCATACTTTCTTAGAGGAGCAGATCAGC
GAGGAGCTGAGTCGGATTTTGGACCGCCGACCAGTCCCTTCCTCCTCTCT
CCACTCCACGCATCAATCTCAAGGCGAATTGTCCACAGGGTCTCCCGGAG
AAACAGGCGGAGAGGGGTCCTTCGGACATGTCAACCGGGAGCCCTCGCTC
CCTCCCTCTTCGAGTCCTGCGGTGTCCAACTCATCCAGGACAGACGCGGG
ATCAGTTCCTCCGTCTCCAACGCCCAGCCCTTCAAACAAGTTTAAAACAT
TTTTAGAAAAGCGGCGATTGGAGACAGGGGGCGGTGCAAGTAAGAGCGGT
ACCAGTACTGTGGGCAGTCTGGGGATAGGAGGTAAACAGCAAACCCAAGC
CCCTTTCAAGGACGAGGATCAAATAAAAGTTTTGGAGTTGCAAGCATGCA
AAAAGCTTAACGACGAAATTTTGAAGACCCTGTGTGATCTCTGTTATCGT
CACATCGTTTCCCTGTTGGTGGCTCGGAGGGAGGCCAACGTTAGCATGGA
CCTGGCAGAAATAAAGGTTTTATGGGACAGCACCATGTCTTTCTTAGGGG
CTGTGGAGCAAATTTCTGGTACAGCTGGCTTCGGCTTGAAGAGCACACTG
CTTACGCAGGCCAAGCAATTCGTTGAGCATGTGCACAAAGGGGGTGTGGG
CCGACTTTTGGCGGCCCTTGACGCAGAGAGGTGGGTGCAGACAGATGTAG
GCGCGGAGCGGCAAGCCGAAATTGATCATCTTATGGCCGGGAGGGCCGTA
TTGGCCGCGCGTGCATCCTCGTCTGTTCAGTCTTTGCAAGAAGACCGTCT
ACTGTCGTTTCCGAAAGAGGACTCGATCTCCGATGTGCAAGACCTTTCTC
ATTCCAGGGAGTCAGGGGAGTTGTCTATCAGTAGCTCTATCAGCAATGAT
GGGCACTCCGAAAATCGGCACAGATTTGTGGCAACCGAGGTTATTATTGG
AGAAGAACGTTACAAAGTAGTGTACAGCGCAGTGCTTCTAATCTCTCTTC
TGAACAGCTACCTAAATGTTGCCGCAAATTTCCCCATGCTCGCCATGGAT
GTGATGCAGTGCGTTGTCAACTTGCTTCGGCTTTTCAATACGCGTACGGC
GCAATTGGTGCTTGGTGCGGGCGCTATTCAGGCGACGGCTCGTCTACGAA
GCATAACAGCAAAGCACTTGGCACTGGCCTCCCAATGTTTGGGACTGATA
CTTGTGCTCCTCCCACATGTCCGTGCCGCCCTTGCCGCCCACTTGCAGAC
CAAGCAGCAAGCCTTTCTGATTGAACTCGATCGCCTCCGTCAGGAGTACG
CCGAGCATCAGGAACGAGTGCTTACGAAGTTTGTAGCTATCATGGGAGAG
CTGATAGCGCACAGTGCGGCCAACACAGGCTTGCGGGAGACGGACTGGGA
TGCCCTGGGTAGTGCCGCCTGCCGATTCGTAGAAGAGGTTATAAAAGGGA
CTACAACCATGCATAGGGTGCTTTATCAAATTTTGCCTCCCACGCAGGTC
CAGGACATCTTTAATCGTGTCTTTGACCTGCTGGGTCATCGGCTGAAAGA
GTATCTGGATCACGCGCGCCCCACTACTAATGCCGGGAGGGAACGGCTGG
TGGATGAAGTATCACATCTCGTCACATCTCTATCTATGCTCCGGGGGGTG
AATGCACAGGCTCTTGCGGAGCTAGAGGGAACAATCCGAGAGAAATTTTC
GCCGGCCTCATTTTTGTCGTCACCTGCTACTACTTCAAATTCGCCATCGC
CAACCTCCCTCACCCTGTGCTTGCCTCCGACAGACTTAAATGGCGGTTCT
GCCTCACACGAACCAATCCTCACTCCTCCGCGGACCTCAGATGCGCCTGC
GTCTGCATCATCTGCCTAA

protein sequence of rna3465

>rna3465-protein ID=rna3465-protein|Name=rna3465|organism=Nannochloropsis gaditana|type=polypeptide|length=748bp
MTFPGPSSGNVNGPVILQPLDVMVSNATETPPPGPESVWTRPVLGINTLL
HVPRFSDWSGGDATRDGLGGVAVLFGGKITQVGNVGALQFPKNSHYHLQE
GSSWFKGVSEAAVEAQSLISMKDADLQGPECWESETESLLRSEALGLPVG
GHGASMSFCCFVGSLCPFEGVAVLCPLEGGYFCLPNMTRPECCAEGHYCP
TPGVVMICEQGGYCPVGSSAIVPCTWWMWCRKPGLKRPDKIAAGVVALVL
VFSTFAALAVLNKIFLRCRFYYRQSRDTERRKRGLLTSRGTHYQELHEPL
LQIKEIFDREKDGEKNSDNISSANHSNKIKQTQTAISTLGSTKSTTTPLR
SAKRNSISGEEEGPGVARPSLGGRSSVGPVLRERHKVDRIDLQFRDLTVE
LPGGRRKVLNGVTGGFRSGRVTAVMGPSGCGKTTLISALSNRLGLGTRVI
GRTFINGSPESSTALHDVMGFVPQDDIMYEDLTVKENLLYCCQLRADPSM
SRAEQRQHVNRVIDSLGLFPSRHSLIGSTEDRGISGGQRKRVNVGMELTS
KPLVLFLDEPTSGLDSTTSAELMQYLHRLTGTGLTIAAVIHQPRIEVFLG
VDDVIFLGRGGRVAYYGSARDAVQYFTEQGFPFEPTVNPADRILDIITKA
DDSLYEAWQIFSSSSARNGSDLRRGDLFGYWVPSEAGNVGDDGVDGAEDW
RRSLSTGSSSSGSSIYRSGCHTSASQYGGKKRAISTQSAVEHGRKFRN

mRNA from alignment at CM002461.1:481858..484104+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3465 ID=rna3465|Name=rna3465|organism=Nannochloropsis gaditana|type=mRNA|length=2247bp|location=Sequence derived from alignment at CM002461.1:481858..484104+ (Nannochloropsis gaditana)
ATGACTTTTCCTGGCCCCAGCAGCGGCAACGTGAACGGCCCTGTAATACT
GCAGCCCTTGGATGTCATGGTCTCGAATGCAACCGAGACGCCACCGCCTG
GTCCTGAGAGTGTGTGGACACGGCCCGTCCTGGGCATCAACACGTTGCTG
CATGTCCCGAGGTTTTCTGATTGGAGCGGTGGGGATGCTACACGCGATGG
CTTGGGCGGCGTTGCTGTTTTATTCGGAGGGAAAATAACTCAGGTGGGCA
ATGTGGGGGCGCTTCAGTTCCCGAAGAACAGCCACTATCACCTTCAAGAA
GGCTCTTCATGGTTCAAAGGGGTCTCGGAAGCGGCTGTGGAGGCTCAGTC
ACTAATAAGCATGAAAGATGCGGATTTGCAAGGGCCTGAATGCTGGGAAA
GCGAGACAGAGAGCTTGCTACGGTCGGAAGCTCTGGGATTGCCGGTGGGC
GGGCACGGCGCGAGCATGAGTTTTTGCTGCTTCGTGGGGTCCCTATGCCC
ATTTGAGGGTGTGGCAGTGCTATGTCCTCTAGAAGGGGGCTACTTTTGCC
TTCCGAATATGACGCGACCCGAGTGTTGTGCCGAGGGTCACTACTGTCCA
ACGCCCGGAGTCGTGATGATatgcgagcagggagggtaCTGTCCCGTCGG
AAGCAGCGCCATCGTGCCCTGTACTTGGTGGATGTGGTGCAGGAAGCCTG
GACTCAAGCGCCCCGATAAGATAGCAGCAGGGGTAGTAGCCCTTGTTCTT
GTCTTCAGCACATTTGCGGCATTGGCAGTCTTGAACAAAATCTTTCTTCG
TTGTCGTTTTTACTACCGCCAAAGCCGCGACACGGAGAGGCGAAAGCGAG
GCCTTTTGACTAGTCGAGGCACGCATTATCAAGAGCTGCACGAGCCCTTG
TTACAGATTAAAGAGATCTTTGATCGCGAAAAGGATGGTGAAAAAAACAG
TGACAACATCAGCAGCGCCAATCACAGCAACAAAATCAAACAAACCCAGA
CAGCAATATCCACGCTAGGGTCGACGAAATCGACCACAACCCCCCTGCGG
TCTGCAAAGAGGAACAGCATtagcggggaagaggaaggccctGGTGTCGC
CCGCCCAAGCCTTGGTGGCCGTTCAAGCGTAGGGCCCGTGCTGCGGGAAC
GGCACAAGGTGGACCGCATAGACCTGCAGTTTCGGGATTTGACTGTGGAG
CTACCCGGCGGCCGGCGCAAAGTGCTGAATGGAGTGACGGGTGGCTTCCG
CTCTGGGCGTGTGACGGCGGTAATGGGCCCGTCAGGATGCGGCAAAACCA
CGCTAATCTCAGCCCTTTCCAATCGGCTAGGACTGGGCACAAGGGTAATA
GGCCGGACCTTTATCAACGGAAGTCCCGAGTCCTCTACAGCCCTGCATGA
CGTCATGGGTTTTGTCCCGCAAGATGATATTATGTACGAAGATTTGACTG
TCAAGGAAAACCTTCTGTACTGCTGCCAACTCCGCGCGGATCCCAGCATG
AGCCGAGCCGAGCAGCGGCAGCATGTGAATCGTGTTATCGATTCATTGGG
CCTTTTCCCGAGCCGGCACAGCCTTATCGGATCAACAGAGGACCGTGGGA
TCTCGGGCGGCCAGAGGAAGCGAGTGAACGTGGGCATGGAACTGACGAGC
AAACCTCTCGTGCTCTTCCTCGACGAGCCCACGAGCGGACTTGACAGCAC
AACTTCCGCCGAACTCATGCAGTATCTGCATCGTCTTACGGGCACGGGGC
TGACCATTGCAGCAGTCATACACCAGCCTCGCATTGAAGTCTTTCTCGGC
GTCGATGACGTGATTTTCTtgggacgtggtggccgAGTAGCTTACTACGG
TTCCGCACGGGACGCTGTACAATATTTTACTGAGCAAGGCTTTCCTTTTG
AACCAACTGTAAATCCAGCCGATCGCATCCTTGATATCATCACGAAAGCC
GACGACTCCCTTTACGAGGCCTGGCAgatattttcttcttcctccgcgag
GAATGGCTCAGACCTGCGACGAGGGGATCTATTCGGATACTGGGTTCCTT
CGGAAGCAGGCAACGTCGGCGACGACGGAGTCGACGGCGCTGAGGATTGG
AGGCGCTCCCTCAGCACgggtagcagcagcagtgggaGCAGCATCTACCG
ATCTGGGTGCCATACTTCGGCGTCTCAGTATggtgggaaaaaaagagcAA
TATCAACACAGTCAGCGGTGGAACATGGGCGGAAATTTCGCAATTGA

Coding sequence (CDS) from alignment at CM002461.1:481858..484104+

>rna3465 ID=rna3465|Name=rna3465|organism=Nannochloropsis gaditana|type=CDS|length=2247bp|location=Sequence derived from alignment at CM002461.1:481858..484104+ (Nannochloropsis gaditana)
ATGACTTTTCCTGGCCCCAGCAGCGGCAACGTGAACGGCCCTGTAATACT
GCAGCCCTTGGATGTCATGGTCTCGAATGCAACCGAGACGCCACCGCCTG
GTCCTGAGAGTGTGTGGACACGGCCCGTCCTGGGCATCAACACGTTGCTG
CATGTCCCGAGGTTTTCTGATTGGAGCGGTGGGGATGCTACACGCGATGG
CTTGGGCGGCGTTGCTGTTTTATTCGGAGGGAAAATAACTCAGGTGGGCA
ATGTGGGGGCGCTTCAGTTCCCGAAGAACAGCCACTATCACCTTCAAGAA
GGCTCTTCATGGTTCAAAGGGGTCTCGGAAGCGGCTGTGGAGGCTCAGTC
ACTAATAAGCATGAAAGATGCGGATTTGCAAGGGCCTGAATGCTGGGAAA
GCGAGACAGAGAGCTTGCTACGGTCGGAAGCTCTGGGATTGCCGGTGGGC
GGGCACGGCGCGAGCATGAGTTTTTGCTGCTTCGTGGGGTCCCTATGCCC
ATTTGAGGGTGTGGCAGTGCTATGTCCTCTAGAAGGGGGCTACTTTTGCC
TTCCGAATATGACGCGACCCGAGTGTTGTGCCGAGGGTCACTACTGTCCA
ACGCCCGGAGTCGTGATGATatgcgagcagggagggtaCTGTCCCGTCGG
AAGCAGCGCCATCGTGCCCTGTACTTGGTGGATGTGGTGCAGGAAGCCTG
GACTCAAGCGCCCCGATAAGATAGCAGCAGGGGTAGTAGCCCTTGTTCTT
GTCTTCAGCACATTTGCGGCATTGGCAGTCTTGAACAAAATCTTTCTTCG
TTGTCGTTTTTACTACCGCCAAAGCCGCGACACGGAGAGGCGAAAGCGAG
GCCTTTTGACTAGTCGAGGCACGCATTATCAAGAGCTGCACGAGCCCTTG
TTACAGATTAAAGAGATCTTTGATCGCGAAAAGGATGGTGAAAAAAACAG
TGACAACATCAGCAGCGCCAATCACAGCAACAAAATCAAACAAACCCAGA
CAGCAATATCCACGCTAGGGTCGACGAAATCGACCACAACCCCCCTGCGG
TCTGCAAAGAGGAACAGCATtagcggggaagaggaaggccctGGTGTCGC
CCGCCCAAGCCTTGGTGGCCGTTCAAGCGTAGGGCCCGTGCTGCGGGAAC
GGCACAAGGTGGACCGCATAGACCTGCAGTTTCGGGATTTGACTGTGGAG
CTACCCGGCGGCCGGCGCAAAGTGCTGAATGGAGTGACGGGTGGCTTCCG
CTCTGGGCGTGTGACGGCGGTAATGGGCCCGTCAGGATGCGGCAAAACCA
CGCTAATCTCAGCCCTTTCCAATCGGCTAGGACTGGGCACAAGGGTAATA
GGCCGGACCTTTATCAACGGAAGTCCCGAGTCCTCTACAGCCCTGCATGA
CGTCATGGGTTTTGTCCCGCAAGATGATATTATGTACGAAGATTTGACTG
TCAAGGAAAACCTTCTGTACTGCTGCCAACTCCGCGCGGATCCCAGCATG
AGCCGAGCCGAGCAGCGGCAGCATGTGAATCGTGTTATCGATTCATTGGG
CCTTTTCCCGAGCCGGCACAGCCTTATCGGATCAACAGAGGACCGTGGGA
TCTCGGGCGGCCAGAGGAAGCGAGTGAACGTGGGCATGGAACTGACGAGC
AAACCTCTCGTGCTCTTCCTCGACGAGCCCACGAGCGGACTTGACAGCAC
AACTTCCGCCGAACTCATGCAGTATCTGCATCGTCTTACGGGCACGGGGC
TGACCATTGCAGCAGTCATACACCAGCCTCGCATTGAAGTCTTTCTCGGC
GTCGATGACGTGATTTTCTtgggacgtggtggccgAGTAGCTTACTACGG
TTCCGCACGGGACGCTGTACAATATTTTACTGAGCAAGGCTTTCCTTTTG
AACCAACTGTAAATCCAGCCGATCGCATCCTTGATATCATCACGAAAGCC
GACGACTCCCTTTACGAGGCCTGGCAgatattttcttcttcctccgcgag
GAATGGCTCAGACCTGCGACGAGGGGATCTATTCGGATACTGGGTTCCTT
CGGAAGCAGGCAACGTCGGCGACGACGGAGTCGACGGCGCTGAGGATTGG
AGGCGCTCCCTCAGCACgggtagcagcagcagtgggaGCAGCATCTACCG
ATCTGGGTGCCATACTTCGGCGTCTCAGTATggtgggaaaaaaagagcAA
TATCAACACAGTCAGCGGTGGAACATGGGCGGAAATTTCGCAATTGA

Synonyms

Publications