rna3462, rna3462 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3462
Unique Name	rna3462
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3142
Alignment location	CM002461.1:470089..471577 -

Link to JBrowse

Properties


Property Name	Value
Product	g10 protein
Orig transcript id	gnl\|cribi\|Naga_100010g15.6171.mrna
Orig protein id	gnl\|cribi\|Naga_100010g15.6171
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:470089..471577 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g15	gene3336	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3462	rna3462-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27201.1	cds3453	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:470089..471577-
coding sequence from alignment at CM002461.1:470089..471577-

mRNA sequence

>rna3462 ID=rna3462|Name=rna3462|organism=Nannochloropsis gaditana|type=mRNA|length=3142bp
CTCACGCTAGTTCACAGCATGAGACCGCTGCTGCCGGGGTTGCCATGATC
ACGGGGACTAAGGTTTTGTGTGCGCCTGAGTTCAAGCACTGCTGTCGCAT
TACCCTGCAGATACAGTCCACACCCTTATGGATGACATTTCTATCATAAT
GTTCCCCTCCAGGCGTCTTTCGGGCAAATCTCGTCTCACCCGTACTCACG
CACGGGTCTTGCGCCGATGCATCTGGGAGGAACGAAAGCATCAGCTTAGT
GGAGCATAGGAATCAGCAGCAGCATGCTGACACCAGAGCGTGAAGACACA
CCGTCTCCTCCCCTCGCCCAGAGGGTTCGAGCAAGGACACGAAGTTGGCT
TGCTAGACAAGCGCCGGGCGGGGGGGGCATCATGGACGAGGAGCAAGCGC
GGAGACACCGGTCAAGAGTGTTTCAGATGGGCTTGTTCATGTGCTTTCTG
CTTTTATTCGCCGATCATCGCAATGGCAATGCAGGCTCTCCTGCATACGT
GGGGGACGCAGACAGCAACGGAGAGGCAGAGGACTACCGACAGCAAGGGG
TAGGCATGGGTGATTTCGGAAACGGGGGGGGGCGGGGGGCAGGGAGGAGG
CCACGTGGGAGGGCGTGGTCCTTCCAGCCAGGGCGACGCAGCGATTGAAA
GAGTTCGTCCGGCTTCAAGGAAAAGGATGTTTCTACGCTGCAAACACCAC
CGGCTACTACCGCGGGGCCTGGACAAAGCAGGTGGAACCGCCTGTGGCTT
TAGAGGCCAATCCCGGGCGCCGCCTCCGCCTCATGCAGGCCGGGGGGAGT
GACGGGCTGCCGGGGGTGGCGGGCAGGTTCGGCGGCTCTGCGGAGGAGAC
TCGCCGCAGGCCAGCCACCAAGACGGGGGCTCAGGTGCCAGGGGGCATGC
GGCTGCACCATACAGAGGGGCGCGTGGACGTGCAGCTTTTCATGAATCCC
GTGGCAGGCCTGACCGACCTGAGTCTGGTGCATGGCTACTTCAAGCTCCT
GGACGGGCCCTTCTCCTCCGAGCGCGACGTGTTCGCAGTCCTCAAGGGCG
TGTACCTGCGCCGTGATGGCCGTCTCCTGCTCCGAACCGTCTCGCAGAAG
CAGGCAGGCACCCTGGGCTTCGCCTACACCCTCCCGGCCTCCTCGGCCAA
GACCTTCCGGGCCCAAGGCAGCGATAGCGACAAACCTGCAGGGCGCGCGA
CCCGGACCCTAGGAGAGCCGAGCCAGCGTCTAGGGGGCGGAGAGGGGGTA
GAGGGCAATCCCGGCGACGCGAGTGATCAGGCCTCTCCCTCGCACATGGC
GGCAAACGCCGATACCGGCCTTGAGAGACGGATAGCAGGTGTCTGGGGAG
ATGTAGCAAGCTACCCGGATGTGGAGATGCGCCTGGATGCCGTCTTGAGG
GAGGTTGCAGCGAGCGCAGGTACTGACCTGGAGGATCGGGCGGCAGGGCG
AGAGGCAGAGGAAGCGGACGTGTTTTTCGGAATGCAGTTACAGGCCGACA
AGAAGCTGGATATGGATGGAGCTGATGAGAGTGAAGGGGCGGAAGTGGTG
GGGCTGACGGTGCTGAAAGGTGGGGCGCTGTTGGCGGGGATGGAGGAGAA
GGCGGCTCCGGACGGCGGCTTGCTGGAGACAGTCCTGATCCCAGACAGGA
CCAAAGAGAGATACTTCCGGCACCAGACGAGCAACGGGCGGCGTTGCGTG
TTCACCCTGGACGCGCGCTCCTCCCCGCGCCTGAACGCCAGCCAGGTCAT
GGGCCAGACGGGGGCCCAGGGCGACGCCTCCTCCTCCTCCTCCACTGCCG
CGGCGGAGAGCCAGGCGCGGCTTGAGTTGGCGGATGGCTTCGAAGGGACG
CTGACCAGTCCCGAGTGCGACGTGGCTCTGAGTGTGTCCTCACAGGCGAT
CCGCCTCGACTGGACTCAGGCCTATCGCAAGGCCGTCAACTACTCCATCA
TCGTCACCCTTGTCTGCGTCCTGCAAATCGCTCTCCTCTTCCGCCAGCTC
TATTTCTCGCGCACGCAAGCAGCGGCCTCTCGGGTCTCCCTCTTGTGTAT
CGGCCAGCAAGCCATCCTAGACGCCCTCCTCTGCATCGCCCACCTCCTTC
TGTGCGCTGTGCTTCAGCCCCTCTTCGCCGCCTTCGCCTCCATCGCCTTC
TTCAAGCTTGTCATCTTCTCCATCTTCGAGATCCGCTACATGTTCATCAT
CCACCAGTCACGCGATTCTCAGTCCGCCGCTGCCACCTCCTTCAACGGCC
TTCGCCGGCAGCTAGCCGCCCTCCACGCCCGTTTCTACGCGGTCCTTTTC
CTCCTCCTCTTCCTCGTTTACTTCTTGGCGCAGTACTTGGAGGTCCTCGT
CTTCGTCCTTTACTCCTTCTGGGTTCCGCAGATCGTCATGAACGCCAGCA
AAGGCCTCCGGCGTCCTCTCAATCGGACCTACGTGCTTGGCATGAGTCTG
GCGCGCCTCGCCATCCCCCTCTACGTGTACGGCTGTCCGGAGAACTTTAT
TCACCTCATTTTTTCGGGCTACAGGCCCGATTACCGGCTCTGCTTCGCCC
TGGTCGTCTGGGTGGGGGCGCAAGTCGCTGTCCTCCTCTCGCAAGATTAC
CTTGGCCCGCAGTATATGATCCCAGCGCGCTTCCTACCGCCCAAGTACAA
CTACTATCGCCCAGTGCCCCAGGGAAGGGGGGGGAGAGCGCAAGGTCCTC
AACCCACAGTGCGAGCAGGAGGGTTGGTGCACACGCAAAGCAGTGGGAGC
AGTGGTGGCTGCGAGGAGATTGAGTTGATGGACCTGGAAGAGGGACCGGG
ACACGGGGGGGAAGCGGATGGGGAGGAGGGCGGGGCCCTGGAGTGCGCCA
TTTGCTTCAACGACGTGGATGTGACGCGCTTGGGGAGCTACATGGTAGCG
CCGTGCAATCACGTCTTCGACAGGGAGTGTCTGGAGCGCTGGATGGACAT
CAAGTTGGAGTGTCCTGTCTGCCGGTGCTCCCTTCCTCATCGGTGAAATG
GCGCGGGGAGGGGGTCGGCTGTACATAGTCAATCAAAGATGGGCCGGAAA
AGGGGGGGGCTGGCCTCTGTGTCGATGCGAAGACTTGCGAGAGAGCAAAT
AGTGTTCTTGGCAAAGAAATGAACGGATACTTGTGCTTGCAG

protein sequence of rna3462

>rna3462-protein ID=rna3462-protein|Name=rna3462|organism=Nannochloropsis gaditana|type=polypeptide|length=262bp
MSRWGRKARPPPGFDYLEPTLAALEAELRESTYINLLCNRRHAHVIIFLM
LFDRYRPQSEVNEGHEGKRKNESLWPVHQINWQRSRYIFDMFYRYEKISR
EVYEYCVQMKLVDAALAAKWKKPGYEKLCCTYAINTKNFKFGTTSICRVP
KQVLNEGTVVEDANCGCRGCSSGDQGERNIFGNKYGQYLAGIQVRRERKQ
AKAAAAVAGVWAEGGGEEDEEEEDDEAEEEEEEEEEGHGKRSVHDERTEG
GPEMHIHKKVKA

mRNA from alignment at CM002461.1:470089..471577-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3462 ID=rna3462|Name=rna3462|organism=Nannochloropsis gaditana|type=mRNA|length=1489bp|location=Sequence derived from alignment at CM002461.1:470089..471577- (Nannochloropsis gaditana)
AAGAACGACGCAACGTAGTCTATGCCTGTGAAGTCTATCGTAAATGCGAG
TGGCTGTCAGAAGATGTCTTTACTACTCCACGTCAGATACGTGGTACGCG
CCTCTATGCCCGCAAGATACGACCCCGCAGCGCCGGAAAGGAGCGAATAA
GAAGCTCCGTGCTTGACATCGCGTTTTACGCTTTATTATGGCTTGACCCT
TGCCACGCATCACCACCATGTCTTTTTGTTCAACCGCAGTAACTATATTT
TACTAGGATGCCCACGTATGTTCACATCTAATGAGCAGGTTTTATATCCA
TTCGCGGTTATTACACTTTAGCTCCATCTCCAGAAGCAGCCCCCAGGATT
TCTTCGTGAGGTTCTGCCCTCCCTACAAGAAACAATATGTCGCGATGGGG
AAGAAAGGCCCGCCCGCCGCCTGGGTTTGACTACTTAGAGCCTACATTGG
CAGCCTTGGAGGCCGAGCTACGAGAAAGTACGTACATAAACCTTCTTTGC
AATCGACGGCATGCACATGTCATAATCTTTCTGATGCTTTTCGATCGTTA
TCGACCACAATCAGAGGTCAATGAGGGCCACGAAGGGAAGCGTAAAAATG
AGTCTTTGTGGCCTGTTCATCAAATTAATTGGCAGCGGAGTCGATATATT
TTCGACATGTTTTATCGCTATGAGAAGATCAGCCGTGAGGTGTATGAGTA
TTGCGTGCAGATGGTACGTAGGAATTTTATTTTTCATGCCATAGACGTGT
ATTATGCAAGGAAATTTTGTCAAACTTGTTCTTCTTTGGTTGGTTTGCGA
ATTGTTCCTCTTGCACTGCCTTCTCCAGCTCGCGGAGTGTCTCACTCTTT
TTCCCTCGGTTTCCCCTCAAATTTCCTTCCACTCCTCCCTGTTTGCCGTA
GAAACTCGTCGATGCAGCTTTAGCAGCAAAATGGAAAAAACCAGGCTACG
AAAAGCTCTGCTGCACTTATGCGATCAATACTAAAAATTTTAAGTTTGGG
ACGACGAGTATTTGTCGCGTACCGAAGCAGGTCTTGAACGAGGGCACCGT
GGTGGAGGACGCGAACTGCGGCTGCCGAGGGTGCTCCTCAGGGGACCAGG
GAGAGAGAAATATCTTTGGAAATAAGTATGGGCAATACCTCGCGGGCATC
CAGGTGCGGCGGGAAAGGAAACAAGCCAAGGCAGCCGCCGCAGTTGCAGG
GGTGTGGGCTGAGGGCGGAGGGGAGGAGGACGAGGAAGAGGAGGACGATG
AAGCAGAGGAGGAGGAGGAAGAGGAGGAGGAGGGGCACGGAAAGCGAAGC
GTACATGATGAAAGAACAGAGGGTGGGCCAGAGATGCACATTCATAAGAA
AGTCAAAGCATAGAGTAAATAGCGACGATTGGCACTGGCGGACCGTGCAC
TGTAGGCAAGCTGACGAAAAGCAACCTTTTGGTCCTGAATGCATGGCCCT
GCAAGCACAAGTATCCGTTCATTTCTTTGCCAAGAACAC

Coding sequence (CDS) from alignment at CM002461.1:470089..471577-

>rna3462 ID=rna3462|Name=rna3462|organism=Nannochloropsis gaditana|type=CDS|length=1578bp|location=Sequence derived from alignment at CM002461.1:470089..471577- (Nannochloropsis gaditana)
AAACTCGTCGATGCAGCTTTAGCAGCAAAATGGAAAAAACCAGGCTACGA
AAAGCTCTGCTGCACTTATGCGATCAATACTAAAAATTTTAAGTTTGGGA
CGACGAGTATTTGTCGCGTACCGAAGCAGGTCTTGAACGAGGGCACCGTG
GTGGAGGACGCGAACTGCGGCTGCCGAGGGTGCTCCTCAGGGGACCAGGG
AGAGAGAAATATCTTTGGAAATAAGTATGGGCAATACCTCGCGGGCATCC
AGGTGCGGCGGGAAAGGAAACAAGCCAAGGCAGCCGCCGCAGTTGCAGGG
GTGTGGGCTGAGGGCGGAGGGGAGGAGGACGAGGAAGAGGAGGACGATGA
AGCAGAGGAGGAGGAGGAAGAGGAGGAGGAGGGGCACGGAAAGCGAAGCG
TACATGATGAAAGAACAGAGGGTGGGCCAGAGATGCACATTCATAAGAAA
GTCAAAGCATAGATGTCGCGATGGGGAAGAAAGGCCCGCCCGCCGCCTGG
GTTTGACTACTTAGAGCCTACATTGGCAGCCTTGGAGGCCGAGCTACGAG
AAAGTACGTACATAAACCTTCTTTGCAATCGACGGCATGCACATGTCATA
ATCTTTCTGATGCTTTTCGATCGTTATCGACCACAATCAGAGGTCAATGA
GGGCCACGAAGGGAAGCGTAAAAATGAGTCTTTGTGGCCTGTTCATCAAA
TTAATTGGCAGCGGAGTCGATATATTTTCGACATGTTTTATCGCTATGAG
AAGATCAGCCGTGAGGTGTATGAGTATTGCGTGCAGATGAAACTCGTCGA
TGCAGCTTTAGCAGCAAAATGGAAAAAACCAGGCTACGAAAAGCTCTGCT
GCACTTATGCGATCAATACTAAAAATTTTAAGTTTGGGACGACGAGTATT
TGTCGCGTACCGAAGCAGGTCTTGAACGAGGGCACCGTGGTGGAGGACGC
GAACTGCGGCTGCCGAGGGTGCTCCTCAGGGGACCAGGGAGAGAGAAATA
TCTTTGGAAATAAGTATGGGCAATACCTCGCGGGCATCCAGGTGCGGCGG
GAAAGGAAACAAGCCAAGGCAGCCGCCGCAGTTGCAGGGGTGTGGGCTGA
GGGCGGAGGGGAGGAGGACGAGGAAGAGGAGGACGATGAAGCAGAGGAGG
AGGAGGAAGAGGAGGAGGAGGGGCACGGAAAGCGAAGCGTACATGATGAA
AGAACAGAGGGTGGGCCAGAGATGCACATTCATAAGAAAGTCAAAGCATA
GATGTCGCGATGGGGAAGAAAGGCCCGCCCGCCGCCTGGGTTTGACTACT
TAGAGCCTACATTGGCAGCCTTGGAGGCCGAGCTACGAGAAAGTACGTAC
ATAAACCTTCTTTGCAATCGACGGCATGCACATGTCATAATCTTTCTGAT
GCTTTTCGATCGTTATCGACCACAATCAGAGGTCAATGAGGGCCACGAAG
GGAAGCGTAAAAATGAGTCTTTGTGGCCTGTTCATCAAATTAATTGGCAG
CGGAGTCGATATATTTTCGACATGTTTTATCGCTATGAGAAGATCAGCCG
TGAGGTGTATGAGTATTGCGTGCAGATG

Synonyms

Publications